mRNA_H-akashiwo_Contig82.39.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig82.39.1
Unique NamemRNA_H-akashiwo_Contig82.39.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A7S3YJ11_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YJ11_HETAK)

HSP 1 Score: 109 bits (273), Expect = 1.090e-27
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 NISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESKSV 153
            NISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESKSV
Sbjct:   87 NISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESKSV 137
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A6G0XR92_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR92_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.440e-10
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESKSV 153
            IS GSRH+L LT++G +YSWGWG  GQLG ++  +   PT + YF  +++
Sbjct:   57 ISCGSRHTLALTAQGDVYSWGWGQMGQLGHDNHKSLTLPTKIEYFADRNI 106
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A369SJW4_9METZ (HECT-type E3 ubiquitin transferase n=2 Tax=Trichoplax TaxID=10227 RepID=A0A369SJW4_9METZ)

HSP 1 Score: 62.0 bits (149), Expect = 6.550e-10
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESK 147
            +  G RHSLC+T EGK++SWG G  G+LG  D+++R +PTL+   ESK
Sbjct: 3004 VHPGGRHSLCITREGKVFSWGEGIDGKLGHGDVTSRLSPTLIEALESK 3051
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: K3W6X4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6X4_GLOUD)

HSP 1 Score: 61.6 bits (148), Expect = 8.830e-10
Identity = 22/48 (45.83%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESK 147
            +S GSRH++ LT++G++YSWGWG+ GQLG  DL +   P  + +F ++
Sbjct:   58 VSCGSRHTMVLTTQGEVYSWGWGSMGQLGHGDLKSSNFPRKIEFFATQ 105
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: M4BI81_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BI81_HYAAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-9
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFE 141
            +S GSRH++ LT+ G +YSWGWG+ GQLG  DL     P  + +FE
Sbjct:   54 VSCGSRHTMALTANGAVYSWGWGSMGQLGHGDLKCMNVPRKIVFFE 99
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A7R9UGE8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGE8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.730e-9
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESK 147
            +S GSRHS+ LTS GK+ SWGWG  GQLG  D S+   P  ++  E +
Sbjct:   94 LSCGSRHSMALTSSGKVLSWGWGKCGQLGHGDFSSLTAPREIAALEEE 141
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: UPI001CFACBAB (RCC1 domain-containing protein 1 isoform X1 n=3 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFACBAB)

HSP 1 Score: 60.5 bits (145), Expect = 2.240e-9
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESKSV 153
            +S GSRH+  +T +G +Y+WGWGA GQLG  D ++ + P +V YF   S+
Sbjct:  308 VSCGSRHTAAVTCDGDLYTWGWGAYGQLGHGDTTSCDEPRIVQYFSEHSL 357
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A2D4BF31_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BF31_PYTIN)

HSP 1 Score: 59.7 bits (143), Expect = 4.260e-9
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    7 SLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYF 138
            S GSRHS+ +TS G+++SWGWGA GQLG  D+ +   P  + +F
Sbjct:   66 SCGSRHSMVITSSGEVFSWGWGAMGQLGHGDVKSSSVPRRIEFF 109
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A8C4NI62_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4NI62_EPTBU)

HSP 1 Score: 58.2 bits (139), Expect = 7.690e-9
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    4 ISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESK 147
            I+ GSRHS+ +T  GK+Y+WGWGA GQLG  D  + + P  VS+ + +
Sbjct:  135 IACGSRHSVAITKCGKLYTWGWGAYGQLGLGDRRSHDEPHFVSFLQEQ 182
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BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Match: A0A8K1CC24_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC24_PYTOL)

HSP 1 Score: 58.9 bits (141), Expect = 7.910e-9
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    7 SLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFE 141
            S GSRHS+ LTS G+++SWGWGA GQLG   L +   P  + +F+
Sbjct:   64 SCGSRHSMVLTSRGEVFSWGWGAMGQLGHGTLKSSNAPHRIHFFQ 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig82.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YJ11_HETAK1.090e-27100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6G0XR92_9STRA6.440e-1048.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A369SJW4_9METZ6.550e-1052.08HECT-type E3 ubiquitin transferase n=2 Tax=Trichop... [more]
K3W6X4_GLOUD8.830e-1045.83Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
M4BI81_HYAAE1.080e-950.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7R9UGE8_9STRA1.730e-950.00Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
UPI001CFACBAB2.240e-946.00RCC1 domain-containing protein 1 isoform X1 n=3 Ta... [more]
A0A2D4BF31_PYTIN4.260e-950.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A8C4NI62_EPTBU7.690e-947.92Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
A0A8K1CC24_PYTOL7.910e-951.11Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig82contigH-akashiwo_Contig82:1826105..1826478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog4787.PITG_03311T0
PFAMsRCC1
Model size155
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.65e-11
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota,3Q9DB@4776|Peronosporales
DescriptionRegulator of chromosome condensation (RCC1) repeat
Cds size153
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387998.4250305-CDS-H-akashiwo_Contig82:1826104..18261981681387998.4250305-CDS-H-akashiwo_Contig82:1826104..1826198Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig82 1826105..1826198 -
1681387998.436375-CDS-H-akashiwo_Contig82:1826419..18264781681387998.436375-CDS-H-akashiwo_Contig82:1826419..1826478Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig82 1826420..1826478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig82.39.1prot_H-akashiwo_Contig82.39.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig82 1826105..1826478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig82.39.1

>prot_H-akashiwo_Contig82.39.1 ID=prot_H-akashiwo_Contig82.39.1|Name=mRNA_H-akashiwo_Contig82.39.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
NISLGSRHSLCLTSEGKIYSWGWGATGQLGQNDLSTRETPTLVSYFESKS
V
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mRNA from alignment at H-akashiwo_Contig82:1826105..1826478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig82.39.1 ID=mRNA_H-akashiwo_Contig82.39.1|Name=mRNA_H-akashiwo_Contig82.39.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=374bp|location=Sequence derived from alignment at H-akashiwo_Contig82:1826105..1826478- (Heterosigma akashiwo CCMP452)
AATATTTCTTTGGGTTCAAGGCATTCTTTGTGTTTGACGTCTGAAGGAAA
GATTTACAGGTTTGTCGTGTACAACTGAAAACTTTCGTCGCATTGCATGG
CTTTAGCTCTTTTTGCTGCCACCATCATTTTTAGGGCTTGAAACTTTTTA
TTCGGGTAGTAACTGCTGTGAGATAGATGCAGAAGACTTTTTTGCATTTT
TTTTTTTTCTCGTACATTTAAGTAATGAATACACACTCCTCAAATGCTAC
CCAACTGTCCGCTTTAATGGCATACTTCAGCTGGGGATGGGGGGCAACAG
GCCAACTTGGCCAAAATGACTTGTCAACTAGAGAGACACCAACATTGGTT
TCATACTTTGAGTCAAAGTCCGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig82:1826105..1826478-

>mRNA_H-akashiwo_Contig82.39.1 ID=mRNA_H-akashiwo_Contig82.39.1|Name=mRNA_H-akashiwo_Contig82.39.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig82:1826105..1826478- (Heterosigma akashiwo CCMP452)
AATATTTCTTTGGGTTCAAGGCATTCTTTGTGTTTGACGTCTGAAGGAAA
GATTTACAGCTGGGGATGGGGGGCAACAGGCCAACTTGGCCAAAATGACT
TGTCAACTAGAGAGACACCAACATTGGTTTCATACTTTGAGTCAAAGTCC
GTG
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