mRNA_H-akashiwo_Contig82.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig82.36.1
Unique NamemRNA_H-akashiwo_Contig82.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A7S1NZL4_9ALVE (Hypothetical protein n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1NZL4_9ALVE)

HSP 1 Score: 136 bits (342), Expect = 2.120e-32
Identity = 76/154 (49.35%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRAS---MAAGRP 453
            H +AA K   K+S P   PSLQ G+FGA TRL  + +++K LFD A+AGPA G   S+  ++ GLA T+  T EA+A++PV+P ALFH S L G+++ F++  +L     +P+ VHP  V+G  G I +ALNFMPIGRLDGGRA+   +AAG P
Sbjct:  511 HWLAAKKSNTKISLPFFIPSLQTGAFGAVTRLRDYPRSKKDLFDLAIAGPALGLATSLIFFVVGLALTSQGTNEAIASWPVLPAALFHNSFLLGLITDFLDKGLLAEKITTPMPVHPLVVSGFLGSIINALNFMPIGRLDGGRAATSALAAGAP 664          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A0G4GLI0_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLI0_VITBC)

HSP 1 Score: 136 bits (342), Expect = 2.610e-32
Identity = 76/154 (49.35%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRAS---MAAGRP 453
            H +AA K   K+S P   PSLQ G+FGA TRL  + +++K LFD A+AGPA G   S+  ++ GLA T+  T EA+A++PV+P ALFH S L G+++ F++  +L     +P+ VHP  V+G  G I +ALNFMPIGRLDGGRA+   +AAG P
Sbjct:  934 HWLAAKKSNTKISLPFFIPSLQTGAFGAVTRLRDYPRSKKDLFDLAIAGPALGLATSLIFFVVGLALTSQGTNEAIASWPVLPAALFHNSFLLGLITDFLDKGLLAEKITTPMPVHPLVVSGFLGSIINALNFMPIGRLDGGRAATSALAAGAP 1087          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: B8C9S6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9S6_THAPS)

HSP 1 Score: 131 bits (330), Expect = 1.980e-31
Identity = 69/148 (46.62%), Postives = 103/148 (69.59%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMAA 444
            H VAA K+ +K+ + +P PSLQ+G+FG+ T + SF  +R ALFD A++GP    L S+ L + GL+ T TA  +A A+ P++P A+  +S L G +++ V P +++ P + P+ +HP  + GLAGL+ SA+N +PIGRLDGGRASMAA
Sbjct:  267 HHVAAKKYNVKLGSSVPLPSLQVGTFGSITPIRSFLSSRTALFDIAISGPGISMLVSLVLVVVGLSMTITA--KAFASLPMIPAAVVKSSFLIGSIASVVAPKIMMVPLSQPIPIHPLFMIGLAGLVMSAVNLLPIGRLDGGRASMAA 412          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A7S1Z8L5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z8L5_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.870e-31
Identity = 68/147 (46.26%), Postives = 97/147 (65.99%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMA 441
            H++ A    +++  P+P PSLQIG+FG+ T L SF ++R AL D A+AGPA   + S+AL + G+  T  A+ EAL+  PVVP  L  +S   G + + + P +++ P + PV VHP  + GL GL++SALN +PIGRLDGGRA MA
Sbjct:   30 HIIVARLRKIRIGLPVPLPSLQIGTFGSITPLRSFPESRSALLDVALAGPAVTIILSLALMMAGIILTKNASAEALSYMPVVPAVLMRSSFAVGSMVSLMAPKIMMLPLSQPVPVHPAFMVGLTGLVSSALNLLPIGRLDGGRACMA 176          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: K0T8T0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T8T0_THAOC)

HSP 1 Score: 127 bits (318), Expect = 2.910e-29
Identity = 68/147 (46.26%), Postives = 97/147 (65.99%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMA 441
            H++AA    ++M  P+P PSL+ G+FG+ T L SF  +RKA+FD A++GP    L S  L + GL  T TA+ + L  FPV+  AL  +S L G  ++F++P ++L P A P  VHP  + G +GL++ ALN +PIGRLDGGRA+MA
Sbjct:  450 HILAARVHKVEMGCPVPLPSLETGTFGSITPLRSFPSDRKAMFDIAISGPLVATLVSFLLIVSGLDLTVTASAQELERFPVISAALVKSSYLVGAAASFISPKLMLLPNAQPFPVHPLFLVGWSGLVSQALNILPIGRLDGGRAAMA 596          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A835ZIQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIQ3_9STRA)

HSP 1 Score: 124 bits (310), Expect = 3.060e-29
Identity = 69/145 (47.59%), Postives = 96/145 (66.21%), Query Frame = 1
Query:    7 VAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMA 441
            +A+GK  L +  P+  PSLQ+G+FG  T   +F ++RK  FD +VAGPA GA+ S+   + GL  T  AT +ALA FPVVP ALFH+S + G +++   P  +L   ++PV +HP AV G  G+I +ALN MP+GRLDGGR + A
Sbjct:  160 LASGKKNL-LGPPVFIPSLQVGTFGTITPFTTFPRDRKQAFDVSVAGPALGAVVSLGALIGGLLLTGGATTDALAAFPVVPAALFHSSAIIGTITSIALPQAMLQALSTPVPLHPLAVIGFTGVIVNALNLMPVGRLDGGRLAAA 303          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A7S4JVC5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVC5_9STRA)

HSP 1 Score: 122 bits (306), Expect = 7.610e-28
Identity = 69/144 (47.92%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRA 432
            H   A    + +  P+P PSLQIG+FG+ T + SF + R  L D A+AGP A A  S+A+ + G+  T  ++ EALA  PVVP AL  +S L G L + + P V   P + PV +HP  V GL GLI+SALN +PIGRLDGGRA
Sbjct:  331 HAAVARAKNVTLGLPVPLPSLQIGTFGSITPIRSFPETRTDLMDVALAGPGATAALSLAMMIVGIGATVGSSEEALAAMPVVPAALLRSSFLVGSLVSVLAPKVAALPLSQPVPIHPLFVVGLTGLISSALNLLPIGRLDGGRA 474          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A7S1ZJI8_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJI8_TRICV)

HSP 1 Score: 115 bits (289), Expect = 4.300e-26
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRA-SMAAGR 450
            H++AA    +++  P+P PSLQIG+FG  T L +F K+R+ + D A++GP    + S+     GL+ T  A+ E+L + P+VP  L  +S L G L++ + P ++L P + PV VHP    GL GL++SALN +P+GRLDGGRA S A GR
Sbjct:  203 HVIAARLRDVEIGLPVPLPSLQIGTFGCITPLRTFPKSRRDMLDLALSGPLVTMVISLVAVGAGLSLTVGASAESLQSMPMVPAGLMKSSFLMGSLTSVLAPKIMLVPLSQPVPVHPLFTMGLTGLVSSALNLLPVGRLDGGRAFSSAFGR 353          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: B5Y5C7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5C7_PHATC)

HSP 1 Score: 115 bits (288), Expect = 3.020e-25
Identity = 67/155 (43.23%), Postives = 94/155 (60.65%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMAA--GRPGA 459
            H   A +  +K+  P   PS Q+G+FG  T L SF   R+AL DF+++GP A  L S+ +   G++ T  A+   ++TFP VP  +  +SLL GIL + + P V++ P   P+ +HP   AG  GLI+SALN +PI R+DGGRA  AA  GR GA
Sbjct:  454 HYFVAKQRDIKIGLPTTVPSTQLGTFGCVTPLKSFPTTREALLDFSLSGPVAAILMSIIMMSLGISATLNASAATISTFPTVPLTMLKSSLLTGILLSVLAPKVMMMPLPQPIPLHPIFFAGFVGLISSALNLLPIVRIDGGRACTAALGGRVGA 608          
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Match: A0A1Z5J7G1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7G1_FISSO)

HSP 1 Score: 113 bits (282), Expect = 1.780e-24
Identity = 63/149 (42.28%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 HLVAAGKWGLKMSTPLPYPS--LQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALYLFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAASPVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMA 441
            HL+ A + G++   P+P PS  L  G FG  T L SF +NR +LFD+A++GP  G + S+ L +FGL  T  A+  AL+ FPV+  A    S L G L++ + P V++ P + P+ +HP  + G  G+++SALN +P+ RLDGGRA  A
Sbjct:  414 HLLVARRNGIRTGKPVPIPSPYLHAGLFGCITPLRSFPRNRCSLFDWALSGPLTGIIVSLVLMIFGLHHTVNASHTALSRFPVISIAELKCSFLVGSLTSLIAPKVMMLPNSQPIPMHPLFMVGFTGILSSALNMLPVFRLDGGRACTA 562          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig82.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1NZL4_9ALVE2.120e-3249.35Hypothetical protein n=1 Tax=Vitrella brassicaform... [more]
A0A0G4GLI0_VITBC2.610e-3249.35Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
B8C9S6_THAPS1.980e-3146.62Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1Z8L5_9STRA4.870e-3146.26Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
K0T8T0_THAOC2.910e-2946.26Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A835ZIQ3_9STRA3.060e-2947.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4JVC5_9STRA7.610e-2847.92Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S1ZJI8_TRICV4.300e-2643.71Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
B5Y5C7_PHATC3.020e-2543.23Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5J7G1_FISSO1.780e-2442.28Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig82contigH-akashiwo_Contig82:1561305..1562165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LMD3
Preferred nameEGY1
PFAMsPeptidase_M50
Model size861
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006508,GO:0006807,GO:0006950,GO:0006970,GO:0006996,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009651,GO:0009657,GO:0009658,GO:0009668,GO:0009719,GO:0009723,GO:0009725,GO:0009959,GO:0009987,GO:0010027,GO:0010033,GO:0010207,GO:0015979,GO:0016043,GO:0016787,GO:0019538,GO:0019684,GO:0022607,GO:0034622,GO:0042221,GO:0043157,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048564,GO:0050896,GO:0060359,GO:0061024,GO:0065003,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901698
Exons1
Evalue2.15e-33
EggNOG OGsCOG0750@1|root,2QUAP@2759|Eukaryota
Descriptionresponse to cation stress
Cds size516
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387998.3281245-UTR-H-akashiwo_Contig82:1561304..15613371681387998.3281245-UTR-H-akashiwo_Contig82:1561304..1561337Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig82 1561305..1561337 +
1681387998.362151-UTR-H-akashiwo_Contig82:1561853..15621651681387998.362151-UTR-H-akashiwo_Contig82:1561853..1562165Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig82 1561854..1562165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387998.3490763-CDS-H-akashiwo_Contig82:1561337..15618531681387998.3490763-CDS-H-akashiwo_Contig82:1561337..1561853Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig82 1561338..1561853 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig82.36.1prot_H-akashiwo_Contig82.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig82 1561338..1561853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig82.36.1

>prot_H-akashiwo_Contig82.36.1 ID=prot_H-akashiwo_Contig82.36.1|Name=mRNA_H-akashiwo_Contig82.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=172bp
MSTPLPYPSLQIGSFGAETRLLSFAKNRKALFDFAVAGPAAGALASVALY
LFGLAQTATATPEALATFPVVPGALFHTSLLAGILSAFVNPAVLLTPAAS
PVAVHPFAVAGLAGLIASALNFMPIGRLDGGRASMAAGRPGARRGESCVH
DCRAGPAGGSRSRTASSSTGG*
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mRNA from alignment at H-akashiwo_Contig82:1561305..1562165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig82.36.1 ID=mRNA_H-akashiwo_Contig82.36.1|Name=mRNA_H-akashiwo_Contig82.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=861bp|location=Sequence derived from alignment at H-akashiwo_Contig82:1561305..1562165+ (Heterosigma akashiwo CCMP452)
CACCTGGTGGCTGCCGGCAAGTGGGGCCTCAAGATGTCCACCCCCTTGCC GTACCCCAGCCTGCAGATCGGCAGCTTTGGCGCCGAGACCCGGCTGCTCA GCTTCGCCAAGAACCGCAAGGCGCTCTTCGACTTCGCGGTGGCGGGCCCC GCCGCGGGCGCGCTGGCCTCGGTCGCGCTCTACCTGTTcGGGCTGGCCCA GACGGCCACGGCCACCCcggAGGCGCTGGCCACCTTCCCCGTGGTGCCCG GCGCGCTCTTCCACACCTCACTGCTGGCCGGCATCCTCTCGGCCTTCGTC AACCCGGCCGTGCTGCTCACGCCGGCGGCCTCGCCCGTGGCCGTGCACCC TTTCGCGGTCGCGGGGCTGGCAGGCCTCATCGCCTCCGCGCTGAACTTCA TGCCCATCGGCCGGCTGGACGGCGGGCGCGCGTCCATGGCGGCCGGCCGC CCAGGCGCGCGCCGCGGCGAAAGCTGCGTTCATGATTGTCGTGCAGGCCC TGCTGGGGGTTCACGCAGCCGTACAGCATCCAGTTCTACTGGGGGCTGAT TGTGGTCTTCTTCCAGCGGCAGCTCGAAAACCCCTCCCTCGATGAGGTCT CCCAGATCGACGGGACCAGGAAGGCCGTCTTATTCTTGGCGTACCTGCTC ACCATGTTCACGCTCGTCCCTTTCCCTGACATTGGAGTGTGAGCTGCCAC CAGTGATCTCAGCTCTTCCACCACACGCTTGTTCTTGATGATGAACTTTT TGCTGCTGGTGCAGTTTAGCTGGCCTGGAGAACTTTGGGGTGAGAGCAAG TCGATATTGTTGTTAAATAATAGCCTGTGATATTATACTTCTTCGTAAAG TAGTTATGGTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig82:1561305..1562165+

>mRNA_H-akashiwo_Contig82.36.1 ID=mRNA_H-akashiwo_Contig82.36.1|Name=mRNA_H-akashiwo_Contig82.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=516bp|location=Sequence derived from alignment at H-akashiwo_Contig82:1561305..1562165+ (Heterosigma akashiwo CCMP452)
ATGTCCACCCCCTTGCCGTACCCCAGCCTGCAGATCGGCAGCTTTGGCGC
CGAGACCCGGCTGCTCAGCTTCGCCAAGAACCGCAAGGCGCTCTTCGACT
TCGCGGTGGCGGGCCCCGCCGCGGGCGCGCTGGCCTCGGTCGCGCTCTAC
CTGTTcGGGCTGGCCCAGACGGCCACGGCCACCCcggAGGCGCTGGCCAC
CTTCCCCGTGGTGCCCGGCGCGCTCTTCCACACCTCACTGCTGGCCGGCA
TCCTCTCGGCCTTCGTCAACCCGGCCGTGCTGCTCACGCCGGCGGCCTCG
CCCGTGGCCGTGCACCCTTTCGCGGTCGCGGGGCTGGCAGGCCTCATCGC
CTCCGCGCTGAACTTCATGCCCATCGGCCGGCTGGACGGCGGGCGCGCGT
CCATGGCGGCCGGCCGCCCAGGCGCGCGCCGCGGCGAAAGCTGCGTTCAT
GATTGTCGTGCAGGCCCTGCTGGGGGTTCACGCAGCCGTACAGCATCCAG
TTCTACTGGGGGCTGA
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