mRNA_H-akashiwo_Contig816.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig816.3.1
Unique NamemRNA_H-akashiwo_Contig816.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig816.3.1 vs. uniprot
Match: A0A7S3Y3B0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3B0_HETAK)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-14
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 2 
Query:   38 VNDPPLAEDESAWLRLTEAHLEAALAGPGPEVYTLPAR 151
            VNDP  AEDESAWLRLTEAHLEAALAGPGPEVYTLPAR
Sbjct:   59 VNDP-RAEDESAWLRLTEAHLEAALAGPGPEVYTLPAR 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig816.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3Y3B0_HETAK1.790e-1494.74Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig816contigH-akashiwo_Contig816:52743..53883 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size154
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387996.3676322-CDS-H-akashiwo_Contig816:52742..527791681387996.3676322-CDS-H-akashiwo_Contig816:52742..52779Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig816 52743..52779 +
1681387996.3801055-CDS-H-akashiwo_Contig816:53766..538821681387996.3801055-CDS-H-akashiwo_Contig816:53766..53882Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig816 53767..53882 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig816.3.1prot_H-akashiwo_Contig816.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig816 52743..53882 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig816.3.1

>prot_H-akashiwo_Contig816.3.1 ID=prot_H-akashiwo_Contig816.3.1|Name=mRNA_H-akashiwo_Contig816.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=51bp
RRTRPRGPSSPPGERPSAGGGRERLAAPDRGAPGGGARGARPRGVHAARA
Q
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mRNA from alignment at H-akashiwo_Contig816:52743..53883+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig816.3.1 ID=mRNA_H-akashiwo_Contig816.3.1|Name=mRNA_H-akashiwo_Contig816.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1141bp|location=Sequence derived from alignment at H-akashiwo_Contig816:52743..53883+ (Heterosigma akashiwo CCMP452)
CGCCGGACGAGGCCACGGGGGCCGTCTTCACCGCCGGGTGTGGGTGGGGG
TTTTCGTTGGTTTGTCTTCTGGCTCACAACATCGTCTTGTACACATGTAT
ATATATTATGATGATGATTTCACTTCATTAAGTACCATGGCGAGAAGATC
TAGAGCGCCAGGCGAAAAGTACCTATGTAGTATTTCGCAACCAGAGGTGG
ATTGGCGATGTCTGTCGGAACCATCTCGACTCACAGGAGGAGAAAGATGC
ACCGGTCAGGGATGTGAATTATCGGAGGAAGCACCAGTGGAAGAGACAAT
TGAAGGCTGGACCTGGGCCAAAGGGCAGCACAGCATGCAGGGCTTTGCGC
AGCTGGAGCTTCGGCTGGTCAGCGATATACTGTCCGTTAAAGTGCTCAGA
TGCCATGGCACGTGCAAGAAGACATTGGTTGTGGCTCAGGATGTTGTGGC
TCAGGATGTGAGAGGAGCGACACACGTGGAACAAACATATAGAAAAAGGA
GGGGCAGCAGGCTCATTTGTATACACACTGCTATACATATTATTCTCAAA
TGGTAAGTATCCTTCGAGAATCGTCAACAACAAACGAAAAACCCTGCAAC
AGGTAAGAATCTTCCAACAGATCTAGCCAAGCCTTTCCTTATTCCCATCA
TCTCTGGCCTCCCCATGTTTTAGCATTTAAGTGACAAAAAATGCTTTCTG
TAACTGTTGCGACCTTTACCCATTATCGCCTATGTGTGCATAGTTGTCTT
CTAAGAGGAAGGTACATTCTTATGCGTGCGTGCTGCTGTTGGAGAGCGGC
TTCCCTGAGTGAAACGACTTGTTTTCGTTCCCACGAGTGTTGCAGCAGTA
GTGTCACCAATGCTGTTTATACACCCACCCCCTATGAGTTGATGGGGGTA
GTGAAGTGCAAAGGAGAGGGTATATGTGTCATAAACCCCGGCAATCGCCG
GGCGCCGCCGCCCGCCGCTGGGCGCGCCGCTACCGCCGCCCCTGCCGCCG
CCGCCCGGCGGCCGCCGCCCCCAGGTGAACGACCCTCCGCTGGCGGAGGA
CGAGAGCGCCTGGCTGCGCCTGACAGAGGCGCACCTGGAGGCGGCGCTCG
CGGGGCCCGGCCCCGAGGTGTACACGCTGCCCGCGCGCAAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig816:52743..53883+

>mRNA_H-akashiwo_Contig816.3.1 ID=mRNA_H-akashiwo_Contig816.3.1|Name=mRNA_H-akashiwo_Contig816.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=153bp|location=Sequence derived from alignment at H-akashiwo_Contig816:52743..53883+ (Heterosigma akashiwo CCMP452)
CGCCGGACGAGGCCACGGGGGCCGTCTTCACCGCCGGGTGAACGACCCTC
CGCTGGCGGAGGACGAGAGCGCCTGGCTGCGCCTGACAGAGGCGCACCTG
GAGGCGGCGCTCGCGGGGCCCGGCCCCGAGGTGTACACGCTGCCCGCGCG
CAA
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