mRNA_H-akashiwo_Contig81.40.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.40.1
Unique NamemRNA_H-akashiwo_Contig81.40.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.40.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:1485092..1485814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog40148.OGLUM01G33930.1
PFAMsTom7
Model size570
Max annot lvl35493|Streptophyta
KEGG koko:K17771
KEGG TC3.A.8.1
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
Exons2
Evalue0.000665
EggNOG OGs2E18G@1|root,2S8KG@2759|Eukaryota,37X44@33090|Viridiplantae,3GKZ4@35493|Streptophyta,3M1IC@4447|Liliopsida,3IJX3@38820|Poales
Ec32 ortholog descriptionMitochondrial import receptor subunit TOM7
Ec32 orthologEc-22_001240.1
DescriptionTOM7 family
Cds size165
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.324845-UTR-H-akashiwo_Contig81:1485091..14850981681387994.324845-UTR-H-akashiwo_Contig81:1485091..1485098Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 1485092..1485098 +
1681387994.3557458-UTR-H-akashiwo_Contig81:1485416..14858141681387994.3557458-UTR-H-akashiwo_Contig81:1485416..1485814Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig81 1485417..1485814 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387994.3382888-CDS-H-akashiwo_Contig81:1485098..14852351681387994.3382888-CDS-H-akashiwo_Contig81:1485098..1485235Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1485099..1485235 +
1681387994.347014-CDS-H-akashiwo_Contig81:1485388..14854161681387994.347014-CDS-H-akashiwo_Contig81:1485388..1485416Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 1485389..1485416 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.40.1prot_H-akashiwo_Contig81.40.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 1485099..1485416 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.40.1

>prot_H-akashiwo_Contig81.40.1 ID=prot_H-akashiwo_Contig81.40.1|Name=mRNA_H-akashiwo_Contig81.40.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=55bp
MAKKKGTTKKLAKQVKRIVNFVYPIIKYGTVPAVILIGMRTEPRPRLIDV
LSPN*
back to top

mRNA from alignment at H-akashiwo_Contig81:1485092..1485814+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.40.1 ID=mRNA_H-akashiwo_Contig81.40.1|Name=mRNA_H-akashiwo_Contig81.40.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=723bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1485092..1485814+ (Heterosigma akashiwo CCMP452)
GAAGAACATGGCTAAAAAGAAAGGCACAACCAAAAAGCTTGCAAAGCAGG
TGAAACGGATTGTGAATTTTGTGTATCCTATAATTAAATATGGAACGGTG
CCAGCGGTCATACTCATTGGAATGAGAACAGAGCCAAGGCCTAGGTTCGT
TTTTCATTCTTATTTTTTATGGATGCAGTGGATGGTTGTAAAAAATCTGC
TCTTCCTTTCGCGTAAATAAAATGTGATCCTATGAAGCAGTATGATCAAA
ACTCAGAAATTTCTGAATCCTTGCCCTTCCTATTGATGTGCTTTCAGGTT
GATAGATGTTCTTTCCCCTAATTGAGTTCTAGCGTCAATACATAGCAACT
GAACTAAAAGATGTAAAAGATGGAGAGGAGATAGGATGAAAGTGCCTTTG
AAGGAGGTATTGTTTCTGCGCCTTCCTCCGAGGCAGTCATATATGCTCGG
TAGTTGCATGTTACGTTTTCCTCCAAAGCAGTGCGTTTTTTTTGTTTGCC
TTGTTGAGAAGTGACACCAGCCATTATCTGCAGTAGTGTTCTCCATGCGG
AGTTATAGCAAACATTAACGGTAGTTTACAGTTGAGATCAGCCACCATTC
ATACCAGCATCACCATGACTGGGCAGGAGCTTGTTTAGAGGTTTGTCTTT
TGCTGAAGGACCAATTAACTTTACCATACCATCAAACACTTTTTTTTCTT
CTCCCTCCCCCCTTCATTTATTT
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig81:1485092..1485814+

>mRNA_H-akashiwo_Contig81.40.1 ID=mRNA_H-akashiwo_Contig81.40.1|Name=mRNA_H-akashiwo_Contig81.40.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=165bp|location=Sequence derived from alignment at H-akashiwo_Contig81:1485092..1485814+ (Heterosigma akashiwo CCMP452)
ATGGCTAAAAAGAAAGGCACAACCAAAAAGCTTGCAAAGCAGGTGAAACG
GATTGTGAATTTTGTGTATCCTATAATTAAATATGGAACGGTGCCAGCGG
TCATACTCATTGGAATGAGAACAGAGCCAAGGCCTAGGTTGATAGATGTT
CTTTCCCCTAATTGA
back to top