mRNA_H-akashiwo_Contig81.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig81.6.1
Unique NamemRNA_H-akashiwo_Contig81.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: A0A7S3YAF2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAF2_HETAK)

HSP 1 Score: 487 bits (1254), Expect = 5.990e-174
Identity = 243/246 (98.78%), Postives = 244/246 (99.19%), Query Frame = 1
Query:    1 MSPPPNVQHRVLLTVASVNDNTASDAPILMRSTSDPRLGTVILDVGETLLSLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAISTMSEEQAERQEEEAHRMEQAGTIAYTIMGNAGARVRNGPDLNSPVVGDLATGTVVEVTRVPPPEQADHPLVRSGRRVRVLEPLVGWVSRTAGNGTPILHTHSWDA 738
            MSPPPNVQHRVLLTVASVNDNTASDAPILMRSTSDPRLGTVILDVGETLLSLTASCTWKDQGWGNRKGQMLLRLCDEL QVKREFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGH LSVRNFKLAISTMSEEQAERQEEEAHRMEQAGTIAYTIMGNAGARVRNGPDLNSPVVG+LATGTVVEVTRVPPPEQADHPLVRSGRRVRVLEPLVGWVSRTAGNGTPILHTHSWDA
Sbjct:    1 MSPPPNVQHRVLLTVASVNDNTASDAPILMRSTSDPRLGTVILDVGETLLSLTASCTWKDQGWGNRKGQMLLRLCDELRQVKREFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHSLSVRNFKLAISTMSEEQAERQEEEAHRMEQAGTIAYTIMGNAGARVRNGPDLNSPVVGELATGTVVEVTRVPPPEQADHPLVRSGRRVRVLEPLVGWVSRTAGNGTPILHTHSWDA 246          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: A0A7S3Y264_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y264_HETAK)

HSP 1 Score: 297 bits (761), Expect = 3.640e-98
Identity = 156/242 (64.46%), Postives = 176/242 (72.73%), Query Frame = 1
Query:   34 LLTVASVNDNTASDAPILMRSTSDPRLGTVILDVGETLLSLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAISTMSEEQAERQ---EEEAHRMEQAGTIAYTIMGNAGARVRNGPDLNSPVVGDLATGTVVEVTRVPPPEQADHPLVRSGRRVRVLEPLVGWVSRTAGNGTPILHTHSWDAVAHE 750
            LLTVASVND+   D P LM  T    LG      GE L SLTASCTW DQGWGNRKGQMLLR+CD  G+ +REFD+FGIAPH+ES A+FELTSP DL  +QPGDT  VYYRVGGGGGH LSVRNF L +ST+ +E    +   EEEAHR     T AY ++G+ GARVR GP L++P VG+LA GTVVEV   PPPE A HPLVRSGRRVRVL P+ GW SRT G+GTPIL  HS  AV HE
Sbjct:    1 LLTVASVNDHRQEDEPRLMARTPGAVLGD-----GEALRSLTASCTWHDQGWGNRKGQMLLRVCDRRGRARREFDLFGIAPHSESHAVFELTSPADLGAIQPGDTAAVYYRVGGGGGHSLSVRNFMLTVSTIGKEVPRARMPREEEAHRNV---TAAYVVVGSGGARVRIGPGLDAPAVGELAAGTVVEVATPPPPEHAGHPLVRSGRRVRVLAPVAGWASRTTGDGTPILRAHSRAAVLHE 234          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: A0A7S2US05_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US05_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.620e-16
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  139 ETLLSLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFGIAPHNESPAMFELTSPED---LAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAI 420
            E L+ + A CTW DQGWGNRKGQ+ L    +LG   ++ D+FGIAPH  +      T  +D      ++ GD V +   VGGGGGH+L+V+N  +A+
Sbjct:   62 EHLVKVEAKCTWNDQGWGNRKGQIWL----QLGTSGQKLDLFGIAPHKRAVVSCVKTERDDPGFFNAIRAGDEVTLMVVVGGGGGHKLTVKNLSVAL 154          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: A0A1X7U8X6_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7U8X6_AMPQE)

HSP 1 Score: 78.6 bits (192), Expect = 6.380e-15
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  154 LTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAI 420
            L  S  WKDQGWGNRKG + L+L      V  ++   G+APH E  A  EL +   +   + GD  +     GGGGGH+L+V+N+++ +
Sbjct:   28 LVISLKWKDQGWGNRKGDIFLKLMRGEEAVAVKYHPLGVAPHKEEEARTELMNEPIVTEARAGDYYEFSRNPGGGGGHKLTVKNYRVVV 116          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: UPI00106CB057 (uncharacterized protein LOC114531355 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CB057)

HSP 1 Score: 70.5 bits (171), Expect = 2.220e-11
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 1
Query:  154 LTASCTWKDQGWGNRKGQMLLRLCD-ELGQVK---REFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAI 420
            + AS  WKDQGWGNRKG+++++L   + GQ K      +MFGIA H       ++     + + +PGD        GGGGGH L+V+ F + +
Sbjct:   74 MRASVQWKDQGWGNRKGRLMVKLMRRDSGQNKVIAENNNMFGIAEHKMKSDTCKIVDHPVIKLSEPGDFYSFERNAGGGGGHTLTVKEFSVLL 166          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: A0A6S7HQP9_PARCT (LRR-GTPase of the ROCO family n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HQP9_PARCT)

HSP 1 Score: 69.3 bits (168), Expect = 6.290e-11
Identity = 35/95 (36.84%), Postives = 54/95 (56.84%), Query Frame = 1
Query:  160 ASCTWKDQGWGNRKGQMLLRLCD-ELGQ---VKREFDMFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAISTMS 432
            AS  WKDQGWGNRKGQ++++L   + GQ   +  + ++FGIA H+ + +     +   + + +PGD        GGGGGH L  R F + +  +S
Sbjct:   76 ASVEWKDQGWGNRKGQLIVKLMRRDSGQNMVIAEKTNIFGIAGHDWANSTCVFVTHPVVKLAEPGDFYRFERNAGGGGGHSLFARKFTVLLEFLS 170          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: X6LYQ5_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6LYQ5_RETFI)

HSP 1 Score: 71.6 bits (174), Expect = 1.270e-10
Identity = 36/101 (35.64%), Postives = 57/101 (56.44%), Query Frame = 1
Query:  142 TLLSLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFGIAPHN-ESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRL-------SVRNFKLAI 420
            T+ S+  SC WKDQGWGN+K ++ LR+ D  G+ K++ D+FGIA H+ ++       + E +  +  GD++     VG GGGH +       S  N+ L +
Sbjct:  402 TVESIVISCQWKDQGWGNQKSRIYLRIIDPSGRPKQDVDIFGIASHHWQNVTKTYDGNTEIIKAIAKGDSLQFARYVGSGGGHEVLFFFYVSSFYNYVLCV 502          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: UPI00077AE364 (uncharacterized protein LOC107339115 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AE364)

HSP 1 Score: 68.6 bits (166), Expect = 1.350e-10
Identity = 38/99 (38.38%), Postives = 51/99 (51.52%), Query Frame = 1
Query:  133 VGETLLSLTASCTWKDQGWGNRKGQMLLRL----CDELGQVKREF-DMFGIAPHNESPAMFELTSPEDLA-VVQPGDTVDVYYRVGGGGGHRLSVRNFK 411
            +  T++ L+ S TW DQGWGNRKG++ L L     D L +   E+  +FGIA H E      +     +    +PGD        GGGGGHRL V  F+
Sbjct:   71 LSSTVMKLSMSVTWLDQGWGNRKGELFLVLMRPNADGLAEKVAEYRGLFGIAEHKEETRETVINKQHPVVNEAKPGDFYRFMRNAGGGGGHRLIVTEFR 169          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: A0A2D5RS70_9GAMM (PEP-CTERM domain-containing protein n=1 Tax=Rheinheimera sp. TaxID=1869214 RepID=A0A2D5RS70_9GAMM)

HSP 1 Score: 65.1 bits (157), Expect = 1.920e-9
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 1
Query:   49 SVNDNTASDAPILMRSTSDPRLGTVILDVGETLLSLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFD--MFGIAPHNESPAMFELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAISTMSE 435
            ++ND T SD  IL           ++ +    +++     TW+DQGWGNRKG++  ++ D        FD     +A HN +   F +   +D+     G  + +YY VGGGGGHRL + +  ++I+++ E
Sbjct:   31 NINDATPSDGLILWN---------MLDEFQGRMVAFELMMTWRDQGWGNRKGRVFYQIND--------FDPVYLDLAEHNLTSETFSI---QDITA-PAGSVLRLYYTVGGGGGHRLLISDASISITSVPE 140          
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Match: UPI000A1707A8 (PEP-CTERM sorting domain-containing protein n=1 Tax=Cognaticolwellia mytili TaxID=1888913 RepID=UPI000A1707A8)

HSP 1 Score: 65.5 bits (158), Expect = 2.090e-9
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 1
Query:  127 LDVGETLLSLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFG---IAPHNESPAMFELTSPEDLAV----VQPGD--TVDVYYRVGGGGGHRLSVRNFKLAISTMS 432
            ++V +   SLT S  W DQGWGNRKGQ+  RL          FD      +A H        +T  E +AV    + P    T+++ Y VGGGGGHRL +R+  L ++ +S
Sbjct:   50 VNVTDDFYSLTLSLDWYDQGWGNRKGQINFRL--------NNFDWLSSGLLANHRLLSESVTITRAELIAVNTLSLAPSSPTTLEIGYVVGGGGGHRLHIRDASLTVTNVS 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig81.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3YAF2_HETAK5.990e-17498.78Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3Y264_HETAK3.640e-9864.46Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2US05_9STRA1.620e-1643.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A1X7U8X6_AMPQE6.380e-1539.33Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI00106CB0572.220e-1137.63uncharacterized protein LOC114531355 n=1 Tax=Dendr... [more]
A0A6S7HQP9_PARCT6.290e-1136.84LRR-GTPase of the ROCO family n=2 Tax=Paramuricea ... [more]
X6LYQ5_RETFI1.270e-1035.64Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
UPI00077AE3641.350e-1038.38uncharacterized protein LOC107339115 n=2 Tax=Acrop... [more]
A0A2D5RS70_9GAMM1.920e-930.53PEP-CTERM domain-containing protein n=1 Tax=Rheinh... [more]
UPI000A1707A82.090e-936.94PEP-CTERM sorting domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig81contigH-akashiwo_Contig81:348967..349716 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LK68
PFAMsLRRNT_2,LRR_6,LRR_8,Roc
Model size751
Max annot lvl2759|Eukaryota
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800,ko:K16666
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000167
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
EC6.3.1.20
Descriptionregulation of response to stimulus
Cds size750
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387993.3769236-CDS-H-akashiwo_Contig81:348966..3497161681387993.3769236-CDS-H-akashiwo_Contig81:348966..349716Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig81 348967..349716 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig81.6.1prot_H-akashiwo_Contig81.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig81 348967..349716 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig81.6.1

>prot_H-akashiwo_Contig81.6.1 ID=prot_H-akashiwo_Contig81.6.1|Name=mRNA_H-akashiwo_Contig81.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=250bp
MSPPPNVQHRVLLTVASVNDNTASDAPILMRSTSDPRLGTVILDVGETLL
SLTASCTWKDQGWGNRKGQMLLRLCDELGQVKREFDMFGIAPHNESPAMF
ELTSPEDLAVVQPGDTVDVYYRVGGGGGHRLSVRNFKLAISTMSEEQAER
QEEEAHRMEQAGTIAYTIMGNAGARVRNGPDLNSPVVGDLATGTVVEVTR
VPPPEQADHPLVRSGRRVRVLEPLVGWVSRTAGNGTPILHTHSWDAVAHE
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mRNA from alignment at H-akashiwo_Contig81:348967..349716+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig81.6.1 ID=mRNA_H-akashiwo_Contig81.6.1|Name=mRNA_H-akashiwo_Contig81.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=750bp|location=Sequence derived from alignment at H-akashiwo_Contig81:348967..349716+ (Heterosigma akashiwo CCMP452)
ATGTCTCCACCACCAAATGTGCAGCATCGCGTGCTCCTGACAGTGGCATC CGTTAACGACAACACGGCAAGCGATGCTCCGATATTGATGAGGAGCACGA GTGACCCCAGACTGGGCACTGTTATTCTAGATGTCGGGGAAACCCTGCTG TCGCTGACAGCCTCCTGCACATGGAAGGACCAGGGCTGGGGGAACCGAAA GGGCCAAATGCTGCTTAGACTTTGTGACGAACTAGGACAAGTGAAACGGG AGTTTGACATGTTTGGCATCGCCCCACATAATGAGAGCCCCGCTATGTTC GAGCTGACCAGCCCAGAGGATCTGGCTGTGGTTCAGCCCGGCGACACTGT CGATGTGTACTACCGGGTGGGGGGTGGCGGTGGCCACCGTCTGAGCGTGA GAAACTTCAAGCTCGCTATTTCAACGATGTCCGAGGAGCAGGCAGAGCGC CAGGAAGAGGAGGCGCACAGGATGGAGCAGGCCGGAACTATTGCCTACAC TATCATGGGAAACGCTGGGGCCCGGGTGCGGAACGGCCCAGACCTCAATT CTCCAGTGGTGGGTGATCTTGCCACTGGCACAGTGGTGGAGGTGACACGC GTACCTCCGCCGGAGCAAGCCGACCACCCCTTGGTTCGGTCAGGGCGGCG TGTGCGGGTGCTGGAGCCGTTGGTGGGCTGGGTGTCTCGGACAGCAGGCA ATGGCACACCCATCCTGCACACGCACTCCTGGGATGCGGTCGCCCATGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig81:348967..349716+

>mRNA_H-akashiwo_Contig81.6.1 ID=mRNA_H-akashiwo_Contig81.6.1|Name=mRNA_H-akashiwo_Contig81.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=750bp|location=Sequence derived from alignment at H-akashiwo_Contig81:348967..349716+ (Heterosigma akashiwo CCMP452)
ATGTCTCCACCACCAAATGTGCAGCATCGCGTGCTCCTGACAGTGGCATC
CGTTAACGACAACACGGCAAGCGATGCTCCGATATTGATGAGGAGCACGA
GTGACCCCAGACTGGGCACTGTTATTCTAGATGTCGGGGAAACCCTGCTG
TCGCTGACAGCCTCCTGCACATGGAAGGACCAGGGCTGGGGGAACCGAAA
GGGCCAAATGCTGCTTAGACTTTGTGACGAACTAGGACAAGTGAAACGGG
AGTTTGACATGTTTGGCATCGCCCCACATAATGAGAGCCCCGCTATGTTC
GAGCTGACCAGCCCAGAGGATCTGGCTGTGGTTCAGCCCGGCGACACTGT
CGATGTGTACTACCGGGTGGGGGGTGGCGGTGGCCACCGTCTGAGCGTGA
GAAACTTCAAGCTCGCTATTTCAACGATGTCCGAGGAGCAGGCAGAGCGC
CAGGAAGAGGAGGCGCACAGGATGGAGCAGGCCGGAACTATTGCCTACAC
TATCATGGGAAACGCTGGGGCCCGGGTGCGGAACGGCCCAGACCTCAATT
CTCCAGTGGTGGGTGATCTTGCCACTGGCACAGTGGTGGAGGTGACACGC
GTACCTCCGCCGGAGCAAGCCGACCACCCCTTGGTTCGGTCAGGGCGGCG
TGTGCGGGTGCTGGAGCCGTTGGTGGGCTGGGTGTCTCGGACAGCAGGCA
ATGGCACACCCATCCTGCACACGCACTCCTGGGATGCGGTCGCCCATGAG
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