mRNA_H-akashiwo_Contig1214.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1214.3.1
Unique NamemRNA_H-akashiwo_Contig1214.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1214.3.1 vs. uniprot
Match: A0A6V1Q3E0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1Q3E0_HETAK)

HSP 1 Score: 156 bits (395), Expect = 1.230e-47
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:    3 GGGAGVRLGAEAPLWVQAVSEVASVATKISVPDPPVRPKAAIELVPNVRRARGDPQWRLRLHWTQPRCNGAPITHY 230
            GGGAGVRLGAEAPLWVQAVSEVASVATKISVPDPPVRPKAAIELVPNVRRARGDPQWRLRLHWTQPRCNGAPITHY
Sbjct:   36 GGGAGVRLGAEAPLWVQAVSEVASVATKISVPDPPVRPKAAIELVPNVRRARGDPQWRLRLHWTQPRCNGAPITHY 111
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1214.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6V1Q3E0_HETAK1.230e-47100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1214contigH-akashiwo_Contig1214:122885..127098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size232
Hectar predicted targeting categoryother localisation
Exons3
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387123.209806-CDS-H-akashiwo_Contig1214:122884..1229491681387123.209806-CDS-H-akashiwo_Contig1214:122884..122949Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1214 122885..122949 +
1681387123.219218-CDS-H-akashiwo_Contig1214:125368..1254371681387123.219218-CDS-H-akashiwo_Contig1214:125368..125437Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1214 125369..125437 +
1681387123.2283528-CDS-H-akashiwo_Contig1214:127001..1270981681387123.2283528-CDS-H-akashiwo_Contig1214:127001..127098Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1214 127002..127098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1214.3.1prot_H-akashiwo_Contig1214.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1214 122885..127098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1214.3.1

>prot_H-akashiwo_Contig1214.3.1 ID=prot_H-akashiwo_Contig1214.3.1|Name=mRNA_H-akashiwo_Contig1214.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=77bp
MAGGRVCGWARRRRSGFKPCLRLHLLPQKFRCQTHRCGQRLLLSWSRTCG
GPEGTPSGACACTGPSPAATAPPSPTT
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mRNA from alignment at H-akashiwo_Contig1214:122885..127098+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1214.3.1 ID=mRNA_H-akashiwo_Contig1214.3.1|Name=mRNA_H-akashiwo_Contig1214.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4214bp|location=Sequence derived from alignment at H-akashiwo_Contig1214:122885..127098+ (Heterosigma akashiwo CCMP452)
ATGGCGGGGGGGCGGGTGTGCGGCTGGGCGCGGAGGCGCCGCTCTGGGTT
CAAGCCGTGTCTGAGGTGTGTGTGGAGAGAGAGAGAGAGACCTCTCTTCA
TAAAATGATGCTGCTATGGTATTATGAGCCAACATCACTATATATGTATA
CGTATTATAAGCCAACACGACATGTACACATGTGTGCGCAGTGTTTCTGT
CTTCTGTTTGTTTACTGTGTGCGTAGCATCATTCTTGCACGTCATTGGTT
GTTAAAGGTGATGATGATGAGATGCGAAGAAGAATGGCGCTTCTCATTAT
GGGATTGCGCAGAAGGTGTTTCTGTTGCCAACTGTACCCTTGAAGAGGTT
TCATCTGTTTTATTGAAATTCTAGGAAAAAGAGGAAAGGAGTAATGGTTA
TGGATGTAAAGGAAATCACGAAGATACACTCATTTATTTTGCCCCCCCCC
CCCATTTTGTACATTATGGAAGGGTGACTGTATACATTCTGCTAAATGGA
CCTTGCTATTGGTGACTTCCTCATGCATGTGCCATTCATGTTGGCTCTAG
TCTTTGTCTTGTGCAGCTCAAACAAATGAAGTAATAAAACATCCTTTGTT
GGGCCCCATATATATAGGACTTCTTTACTTCATTCATGTTAATATTTTAG
TTGCCAAAACCAAACCCCCAAAATTGACTTATACGTGTATCATACTTGAA
CGTGTTGTGTTTATCGGCTTTCATAAAATCCCGACTTTTGCCAGTTTAAT
AATTAGCCCGATTTTGACAATGCGCCAAAAAAAAAAAGCATATTTTTTGG
TGCAAAATCAGATCCCTCCTAACCCCCCACCCTCCCTCCCAAACATGATA
CAATGCTCTCAGCTTCACCATTGTACAATATATATATAGAAAAGGAAGAG
AGTAGATATAGCACAATTGCTTTCTCTCATCTGCTGTCGAACCCAACACC
TCCTGAATTGAAGACATGCCAAATGCTGGCACGGCGGAAGCTGGACACAG
ACCTCCATCAGTTGTACCTGTTTGGCAAGGAGTGGCTGCTAGAGTTTGAG
CCAAAGAAGTCCCAGGGGCTGGTCGTCTCCAACACCAAGAAGCGGAAGAA
GACGGAGAAGCTTCACCCCCCCCctACGCATGGGAAGAATAGCAGTCAAG
GAGAAGAAGGAGATGGAAATTCTTGGTCTGACTATAGATGCTAGGGGGAA
CTGGTCTCGACACATACAAGCGATAGCCTCAGATGCCCGCAAGCGCTTGG
GAGCAATCAGAAGGATGAGCCACATGCTTGATGACAAGAGCATCATGAGG
GCTTACAAAGCTTTTGTGCGCTCAAAGATTGAGTATGGCAGCCTGGCCTA
CTGGGGAGCTGCAGAAAGCCATTTGAAGAAGCTTGATAGAATTCAAGAGA
GTGCTGTGGCCCTACTCCGCAACCCTGACCCTTCTCTACTACCCCTTCAC
TGGAAAGTAGAAGAGAACAAGCTGCCATTGGATTCACCTGCAAGCTGCTG
GGACGGGCGTGGGCGTGGTATGGCTCGCACCTTGACACCAGAGTTTGATG
ACCCCTCTGCTCCAAAACCTCGGAGATCAGCTCGGCTGGCTGCAACACGC
CCACAGCACCTTCACCAACTGAGACCAGTTCATCTTCCGCCCAACTCTCT
GGCAACTTTCAAAAGATGCTATAGAGCTAGAATTCGGGCATATGGAACGA
TCTAAGACACCCCGCTCTCCAACAGCAGCATGTACAAGAATACCTTCCTC
TTAAAAGACAACTGCACACACATGGACGATAATGGGTAGCGATAGCAACA
GTTACAACAAGCACTTTTTGTCACTTAAATGCTAAAACGTAGAAAAAAAA
AAAAAATGCCAAACTCAGCACCTTTGTCTGATGCATAAGGAGTCTTCATT
AGCCACAACTGCTGCCTGTATGCCTATTATTGTTGTTGTTCTGCCTACGC
GAGCACTTCCTCAATCAATATATCATTGTGCTGCAGACCTATTGATCTAG
ACCTATACTTTGTAGGGCACATCATGAGTCCATAACCATCTTGTGTAAGA
ATTATCACAATGATGTAGTAACAATCAGCTGTCGTCATGGTCACATAGTG
GCACGCTGGCTGGCACCATACTAGAACATAAGGCTGCACAAACCCTCAGC
CCAACATGCAGAAATATGTGGCAAAGGGTGCAAGCCACAAAGACTACTAG
AGAAGAGCCCACCACTTCATAAGCTATAGCTGACCAAACCAGCAAATGCA
TAGGCCCACCAGAGTGGGCAACTGCCAAAAAAGGCCCACGCAATAATAAA
CATATGTTTGAAAATATTCACAATATATACATAATAAATAAAAATAAATA
ATGAATATTATTATATTCCATGTATACATGTATTTTTTAAATCCTATATT
ATTACTAGAACACACATTCCCGTTATTGTCGCCTTGTAATATACATATTT
TTTCAAAACAATATACATTTAATGCACATCACAGGTTGCATCTGTTGCCA
CAAAAATTTCGGTGCCAGACCCACCGGTGCGGCCAAAGGCTGCTATTGAG
CTGGTAAGATTCATTACCAAACCCTTCTACAGCGTGGTGCATTCTGTAGT
ATAATAAAGAGAATGGCGACCATTGCACACTTCAGTCTAAATATTTTATT
TGTTAAGAAGTACAGAAGGGCCCATCAATGATGGTCAATCAAATATACAG
CATAAAGAGGTAGCTAGTGCAAAGCATCTAGTCCCAAATGTAAGTGTTGA
CTAGCCCAGGAGGAGTACCAGATTGGGAGGAGAAGGACTTAGCCAATACC
AACTTCTGATTGAGCAGAAGGCTGTTCATCTTCTGGCAGACGCAAGAGAG
AGACCTCCACCAACGCTGGAGAATCAATGCCTTCTGCCGCCGGTCCACTT
TACCATCCCATGTTAGGGCACAGGAGGTAGCCTTGTCTCTGATGTACCAC
AAGGCCTTACTGCTCCATCTGCCAAAAGTCTCCACTGCGAGCGGAGAGAA
TGAGTTGTTCATCATGAACTATATTATTTGAAAGTCCAGAGATGCTTTAG
GGGATCAGCAGCAAAAAATCAGAGCCAGATGTGGACTACTAGTATTGGTA
TATTGTTCAATATTTTTATTTTCAATACTTAATCCATTCTTCATTCTTCA
TTCATTTTATTATCTTTAAATTAAATGTTATGAGATCATCTGGTGCTATC
ATATTCAAATTTAAATGATTTTGGACCATTCAGATTTCGAAAAACGCTGT
CTCACTTTTATGCCTTTTCGTTTTCCACGGTATGTGGTTCTTTCATTAGG
TTGAAAAAGAGCTTCCAAAGTGGTCCAACGAAGCCCCTGAGCAAGCTCTT
TAGAGCCATAGAATGTATAGCGCAGAAGTGTGGCAAGAAACGTGCCAAAA
TTGCATTAAAGATTTTTGTTTTTCTGTATGCAGCGGCATCTGCCATTAAA
AATCTTGGTAAAATTGGGAAATTTCAGAGCATGTTGCTAAAACCGTTCTT
TTTTCTGTACGCCGGAAATTGCTGTTCATTCTAGATAACACCCTATACTT
ATGTTTTAATAATGGTTTTGGATGGAGTGATGTTATTAATCAGGAGTGGA
CCTCAGGTTGAAGTGGCCCATTGGTGCAGCCCTTCGGGAGTATGCTTGGG
CTTACAGGTTCAATTCCTGCACCTTCCTTCGGGAAGCCCACTGCCCGATA
AGATAACTATGGTAAAAAAGGTTGGTCCGTAGCATTTCGGTACTTCCCTT
ATGTGGATGGTGCCGCGGCGCCACACTGGGCCAGACCTGGGCTCGCTGCT
GGGTAATAGAAAGTGGACCTCAGGTTGAAGTGGCACAGTGATACAGCCCT
CCAGGAGCATGCTTTGGGTCGCAGGTTCAATTCCTGCATCTTCCTTGGGG
AGGTTTGCTGCCAGGTAAACATTTGACATCCGATCTCCGACCAGACAGAA
CAATAGAAGCAATTTAAATGTCACTTCAACAAGTTATATTTTTATACTCA
ATAGAAAGTAATCACACACTTCAACAAGTTGTTGTTGGGGGGCGGCGCCA
ACCCTTGTATACCACTGTCACCCTGCGAACCCAGCCCGCCCGGTTTTCCC
CGCCCCTCCTCCTATAGGTCCCGAACGTGCGGCGGGCCCGAGGGGACCCC
CAGTGGCGCCTGCGCCTGCACTGGACCCAGCCCCGCTGCAACGGCGCCCC
CATCACCCACTACG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1214:122885..127098+

>mRNA_H-akashiwo_Contig1214.3.1 ID=mRNA_H-akashiwo_Contig1214.3.1|Name=mRNA_H-akashiwo_Contig1214.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=231bp|location=Sequence derived from alignment at H-akashiwo_Contig1214:122885..127098+ (Heterosigma akashiwo CCMP452)
ATGGCGGGGGGGCGGGTGTGCGGCTGGGCGCGGAGGCGCCGCTCTGGGTT
CAAGCCGTGTCTGAGGTTGCATCTGTTGCCACAAAAATTTCGGTGCCAGA
CCCACCGGTGCGGCCAAAGGCTGCTATTGAGCTGGTCCCGAACGTGCGGC
GGGCCCGAGGGGACCCCCAGTGGCGCCTGCGCCTGCACTGGACCCAGCCC
CGCTGCAACGGCGCCCCCATCACCCACTACG
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