prot_H-akashiwo_Contig806.6.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig806.6.1
Unique Nameprot_H-akashiwo_Contig806.6.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length145
Homology
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: D8LM46_ECTSI (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM46_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 3.500e-56
Identity = 83/142 (58.45%), Postives = 118/142 (83.10%), Query Frame = 0
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRT-DDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            MSG+LFEDIF+V +LNP+GKKF++VNR+ CKG+TY+MDL+LD N +IY +KEGE+++ V+A TL+L G  DDGTY+   DE +L D YEY MHG VY++D +++ +V V+ASFGGLLMRL G+QRH+A+I++D R++ L+R+
Sbjct:    1 MSGVLFEDIFEVGKLNPDGKKFDRVNRLECKGVTYDMDLLLDTNCDIYPVKEGERLTFVIASTLDLSGKPDDGTYKPLGDEVSLADKYEYVMHGRVYRFDQQKDTKVQVFASFGGLLMRLTGDQRHVANIEVDSRVFCLLRR 142          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A836CD84_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD84_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.360e-54
Identity = 88/141 (62.41%), Postives = 110/141 (78.01%), Query Frame = 0
Query:    2 SGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRT-DDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            +GILFED+F V QLNP GKKF++VNR+ CK +T+EMDL+LD NSEIY++++ +K+S+VL+ TL LDG+ DDGTYR  + E TL   YEY MHG V+KY+     QV V ASFGGLLMRL G QRHL  I IDQRIY+LIR+
Sbjct:    4 TGILFEDLFQVTQLNPTGKKFDRVNRLACKAVTFEMDLLLDINSEIYTVRQNDKLSLVLSSTLALDGAPDDGTYRPIEHEETLASRYEYVMHGRVFKYEQLTGTQVQVSASFGGLLMRLTGEQRHLVHISIDQRIYLLIRQ 144          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: K3X3H5_GLOUD (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=29 Tax=Oomycota TaxID=4762 RepID=K3X3H5_GLOUD)

HSP 1 Score: 174 bits (441), Expect = 1.800e-53
Identity = 83/141 (58.87%), Postives = 107/141 (75.89%), Query Frame = 0
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            M+  LFEDIF+VRQ+NP+GKKF+KV R+ CKG++YE++L LD NSE+Y L++ EK +  L  TL+L+G  DDGTY    +PTLLD Y+Y M+G V++YDHE  + VA+YASFGGLLM L G QRHL  I  D RIY L+RK
Sbjct:    1 MASELFEDIFEVRQVNPDGKKFDKVTRVVCKGVSYELELTLDINSEVYRLRQNEKFTFALVSTLDLEGKPDDGTYNQSGKPTLLDRYDYGMYGKVFQYDHEGGNVVAIYASFGGLLMCLRGEQRHLHMIHNDTRIYCLLRK 141          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S1BC37_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BC37_9STRA)

HSP 1 Score: 165 bits (418), Expect = 6.030e-50
Identity = 79/137 (57.66%), Postives = 105/137 (76.64%), Query Frame = 0
Query:    5 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            LFEDIF V+QLNP+GKKF ++NRI   G T++ DL+LD NSEIY + E EKI++VL+ TL+LDG  DDG Y    EPT+ DNYEY MHG V+   ++ +  +AV+ SFGGLLMRL G+QRHL +++ D+R+YILI+K
Sbjct:    7 LFEDIFVVKQLNPDGKKFSRINRIQATGTTFQCDLLLDTNSEIYPIAEEEKITIVLSSTLSLDGRPDDGEYDQSGEPTMADNYEYVMHGRVFDIKYKGDGVIAVHVSFGGLLMRLTGDQRHLENVRADERLYILIKK 143          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A024G723_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024G723_9STRA)

HSP 1 Score: 165 bits (417), Expect = 2.470e-49
Identity = 79/141 (56.03%), Postives = 105/141 (74.47%), Query Frame = 0
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            M+  LFEDIF+VRQLNPEGKKF+KV R+  KG++YE++L LD NSE++ LK+ +K +  L  TL+L+G  DDG Y    + TLLD Y+Y M+G +++Y+HE  + VA+YASFGGLLMRL G QRHL  +  D RIY L+RK
Sbjct:   37 MATELFEDIFEVRQLNPEGKKFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVSTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFQYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRIYCLLRK 177          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A024TMY4_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=9 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TMY4_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.580e-47
Identity = 73/137 (53.28%), Postives = 104/137 (75.91%), Query Frame = 0
Query:    5 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            +FEDIF+++QLNPEGKKFE+V R+ CKG++YE++L+LD NSE++ +K  E+ +  L  TL+L+G  DDG +    +PTLLD Y+Y M+G V++YDHE  + VA+YASFGGLLM L G+Q HL +I    R+Y L+R+
Sbjct:    6 MFEDIFEIKQLNPEGKKFERVTRLMCKGVSYELELMLDINSEVFPMKVHEQFTFALVSTLDLEGKPDDGIFDQTGKPTLLDRYDYGMYGKVFQYDHEGGNMVAIYASFGGLLMCLRGDQAHLRNIHNGSRVYCLMRR 142          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S0CGW6_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CGW6_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.970e-47
Identity = 80/138 (57.97%), Postives = 108/138 (78.26%), Query Frame = 0
Query:    5 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDG-TYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            LFEDIF+V  LNPE K FE+VNR+   G T+E DL+LD N EIYS++E ++I+VVLA TLNLDG+ DD  +Y    EP+L DNYEY MHG V++  ++++  ++++ASFGGLLMRL G+QRHL++IQ D R+YILI+K
Sbjct:   12 LFEDIFEVTALNPEKKIFERVNRLAATGTTFECDLLLDINCEIYSIQESDRITVVLAGTLNLDGTPDDHFSYTGQSEPSLADNYEYVMHGRVFEILYQKDGMISIHASFGGLLMRLTGDQRHLSAIQPDMRLYILIKK 149          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: A0A7S2GK34_9STRA (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GK34_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.390e-47
Identity = 76/140 (54.29%), Postives = 103/140 (73.57%), Query Frame = 0
Query:    2 SGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            +GI+F D F VRQ+NPE K F++++RI  +G T+EM L++D N E++S+   +KI+  LA TL+LDGS DDGTY   D P+LLD YEYAMHG VY ++H+    + V  SFGGLLMR+ G+QRHL +IQ+DQ IY L+ K
Sbjct:    3 TGIVFNDTFQVRQINPEKKTFDRIDRILAQGETFEMGLLMDINCELWSVNPYDKIAFALANTLSLDGSPDDGTYNQQDGPSLLDRYEYAMHGKVYNFNHKSGQFIEVDISFGGLLMRISGDQRHLMNIQLDQNIYCLMSK 142          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: F0W6P2_9STRA (DNAdirected RNA polymerase I putative n=3 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6P2_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.340e-46
Identity = 76/141 (53.90%), Postives = 103/141 (73.05%), Query Frame = 0
Query:    1 MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            M+  LFEDIF+VR+LNPEGK F+KV R+  KG++YE++L LD NSE++ LK+ +K +  L  TL+L+G  DDG Y    + TLLD Y+Y M+G ++ Y+HE  + VA+YASFGGLLMRL G QRHL  +  D R+Y L+RK
Sbjct:   84 MATELFEDIFEVRELNPEGKNFDKVTRVVGKGVSYELELTLDINSEVWRLKKNDKFTFALVCTLDLEGKPDDGIYNQSGKATLLDRYDYGMYGKIFHYEHEGGNNVAIYASFGGLLMRLRGEQRHLHLVHNDSRVYCLLRK 224          
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Match: K0RE90_THAOC (DNA-directed RNA polymerases I, II, and III subunit RPABC3 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RE90_THAOC)

HSP 1 Score: 156 bits (395), Expect = 2.350e-46
Identity = 80/142 (56.34%), Postives = 105/142 (73.94%), Query Frame = 0
Query:    5 LFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSLKEGEKISVVLAKTLNLDGSLDDGTYRTD-----DEPTLLDNYEYAMHGVVYKYDHEENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRK 141
            LFEDIF++  LNPEGKKFE+VNR+  KG T++ DL+LD+N +IYSL E EK+++VLA TLNLDGS DD T         +EPTL DNYEY MHG V+   ++++  V +  SFGGLL RL G+QRHL++I  D R++ILI+K
Sbjct:    9 LFEDIFEINALNPEGKKFERVNRLSAKGTTFDCDLLLDYNCQIYSLHEEEKMTLVLASTLNLDGSPDDHTSYNPAASFKNEPTLADNYEYVMHGRVFDVSYKKDGVVVIAISFGGLLCRLTGDQRHLSNILPDMRLFILIKK 150          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig806.6.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM46_ECTSI3.500e-5658.45DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A836CD84_9STRA5.360e-5462.41DNA-directed RNA polymerases I, II, and III subuni... [more]
K3X3H5_GLOUD1.800e-5358.87DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S1BC37_9STRA6.030e-5057.66DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A024G723_9STRA2.470e-4956.03Uncharacterized protein n=2 Tax=Albugo candida Tax... [more]
A0A024TMY4_9STRA1.580e-4753.28DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0CGW6_9STRA1.970e-4757.97DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S2GK34_9STRA2.390e-4754.29DNA-directed RNA polymerases I, II, and III subuni... [more]
F0W6P2_9STRA1.340e-4653.90DNAdirected RNA polymerase I putative n=3 Tax=Albu... [more]
K0RE90_THAOC2.350e-4656.34DNA-directed RNA polymerases I, II, and III subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005570RNA polymerase, Rpb8SMARTSM00658rpol8neucoord: 2..141
e-value: 2.4E-53
score: 193.2
IPR005570RNA polymerase, Rpb8PIRSFPIRSF000779RPB8coord: 1..143
e-value: 5.6E-47
score: 157.4
IPR005570RNA polymerase, Rpb8PFAMPF03870RNA_pol_Rpb8coord: 7..141
e-value: 1.1E-48
score: 165.0
IPR005570RNA polymerase, Rpb8PANTHERPTHR10917DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..141
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 6..143
e-value: 1.3E-51
score: 176.4
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..141
NoneNo IPR availablePANTHERPTHR10917:SF0DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3coord: 1..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig806contigH-akashiwo_Contig806:345161..345595 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig806.6.1mRNA_H-akashiwo_Contig806.6.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig806 345161..345595 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig806.6.1 ID=prot_H-akashiwo_Contig806.6.1|Name=mRNA_H-akashiwo_Contig806.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=145bp
MSGILFEDIFDVRQLNPEGKKFEKVNRIYCKGMTYEMDLILDHNSEIYSL
KEGEKISVVLAKTLNLDGSLDDGTYRTDDEPTLLDNYEYAMHGVVYKYDH
EENHQVAVYASFGGLLMRLIGNQRHLASIQIDQRIYILIRKTTA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005570RNA_pol_Rpb8
IPR012340NA-bd_OB-fold