mRNA_H-akashiwo_Contig803.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig803.8.1
Unique NamemRNA_H-akashiwo_Contig803.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig803.8.1 vs. uniprot
Match: A0A7S3XKJ5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKJ5_HETAK)

HSP 1 Score: 138 bits (347), Expect = 1.790e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:   76 MEESVGLLAGQKGDDLSQKGAKRVVWDPELPPDSYYERLILWTPKDFSFLSPSILRQRCWLLCLV 270
            MEESVGLLAGQKGDDLSQKGAKRVVWDPELPPDSYYERLILWTPKDFSFLSPSILRQRCWLLCLV
Sbjct:    1 MEESVGLLAGQKGDDLSQKGAKRVVWDPELPPDSYYERLILWTPKDFSFLSPSILRQRCWLLCLV 65
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig803.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XKJ5_HETAK1.790e-40100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig803contigH-akashiwo_Contig803:259876..260290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size272
Hectar predicted targeting categoryother localisation
Exons2
Cds size195
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387990.5612884-UTR-H-akashiwo_Contig803:259875..2599501681387990.5612884-UTR-H-akashiwo_Contig803:259875..259950Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig803 259876..259950 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387990.5719905-CDS-H-akashiwo_Contig803:259950..2599751681387990.5719905-CDS-H-akashiwo_Contig803:259950..259975Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig803 259951..259975 +
1681387990.5816195-CDS-H-akashiwo_Contig803:260120..2602901681387990.5816195-CDS-H-akashiwo_Contig803:260120..260290Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig803 260121..260290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig803.8.1prot_H-akashiwo_Contig803.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig803 259951..260290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig803.8.1

>prot_H-akashiwo_Contig803.8.1 ID=prot_H-akashiwo_Contig803.8.1|Name=mRNA_H-akashiwo_Contig803.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=65bp
MEESVGLLAGQKGDDLSQKGAKRVVWDPELPPDSYYERLILWTPKDFSFL
SPSILRQRCWLLCLV
back to top

mRNA from alignment at H-akashiwo_Contig803:259876..260290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig803.8.1 ID=mRNA_H-akashiwo_Contig803.8.1|Name=mRNA_H-akashiwo_Contig803.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=415bp|location=Sequence derived from alignment at H-akashiwo_Contig803:259876..260290+ (Heterosigma akashiwo CCMP452)
TACATCACGGTATGAATCCGATGATGGGAAAAATCCTTGAGGAGGAGGCT
GCTGCCTGCTGAGTAGGAAAACAACATGGAAGAAAGTGTAGGCCTTTTGG
GTACGCCATGTGATGAAATTTGATTTCCCCCTTTTTTCTTGGTCTTTGTT
TGCAGAGCCCCCTTTCAAAAGCGGTTCAACTATCAGTCAAACACCAATTA
TCATCCCTTTCTCCATTAAAATTCATTGCGGAATGTGGCTTTCAGCGGGT
CAAAAGGGCGATGATTTGAGCCAAAAAGGTGCTAAGCGCGTTGTTTGGGA
TCCAGAGCTGCCTCCAGACTCTTACTATGAACGACTGATTCTCTGGACAC
CCAAGGACTTTTCCTTTTTGAGCCCCTCAATTTTAAGACAAAGGTGCTGG
CTGCTGTGCTTGGTA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig803:259876..260290+

>mRNA_H-akashiwo_Contig803.8.1 ID=mRNA_H-akashiwo_Contig803.8.1|Name=mRNA_H-akashiwo_Contig803.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=195bp|location=Sequence derived from alignment at H-akashiwo_Contig803:259876..260290+ (Heterosigma akashiwo CCMP452)
ATGGAAGAAAGTGTAGGCCTTTTGGCGGGTCAAAAGGGCGATGATTTGAG
CCAAAAAGGTGCTAAGCGCGTTGTTTGGGATCCAGAGCTGCCTCCAGACT
CTTACTATGAACGACTGATTCTCTGGACACCCAAGGACTTTTCCTTTTTG
AGCCCCTCAATTTTAAGACAAAGGTGCTGGCTGCTGTGCTTGGTA
back to top