mRNA_H-akashiwo_Contig802.19.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig802.19.1
Unique NamemRNA_H-akashiwo_Contig802.19.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI00094E99E4 (uncharacterized protein LOC109521869 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E99E4)

HSP 1 Score: 149 bits (376), Expect = 5.840e-39
Identity = 90/295 (30.51%), Postives = 146/295 (49.49%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAIGRVSALEYRKFTTNVY---SVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +PGV GCLEH   +   +++A+E    + V +LDL  AY S+ H LV  AL  +H P  +  L+ +YY     RV + E  SD     +G+  GCT SV +F +   +L+     KA     R       + + P  AF DD+ + +      +  +   + ++ W   M  K +K RS  + +    +  +F+  V+   SV +  +K  G+V  C   D ++       LEGWL  VD   LPG +K W+  + +  R++W L++Y+VP TVV G+  +     ++WLG+ RS
Sbjct:   25 IPGVPGCLEHTGVVTQVIREAREGRGDLAVLWLDLTHAYGSIPHKLVGVALERHHVPQKVKHLILDYYSKFSLRVSSGEMTSDWHQLEVGIITGCTISVSLFALAMNMLV-----KAAEPECRGPLSKSGVRQPPIRAFMDDLTVTTTAVPGARWILQGLERVMAWA-RMSFKPAKSRSLVLKKGKVTDRFRFSLGVHQIPSVTEKPVKSLGKVFNCSLKDADSIKATSADLEGWLRTVDKSGLPGRFKAWVYQHGILPRILWPLLIYEVPMTVVEGFEQKVSSYLRRWLGLPRS 313          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI0019559B9E (uncharacterized protein LOC120471856 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019559B9E)

HSP 1 Score: 154 bits (390), Expect = 1.100e-38
Identity = 99/295 (33.56%), Postives = 149/295 (50.51%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAI--GRVS-ALEYRKFTTNVYSVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +P V GCLEH   +   +++A+EN   + V +LDL  AY S+ H LV+ ALR ++ PD    L+ +YY     RV      SD      G+  GCT SV++F +   +L+     KA  +  R       + + P  AF DD+ + +      +  +   +EI  W   M  K +K RS  +  G+VS    +   TT V S+ +  +K  G+V  C   D  A     L LEGWLA VD   LPG +K WI  + +  R++W L++Y+VP + V G+  +  R  +KWLG+ RS
Sbjct:  273 IPKVPGCLEHTGVVTQLIREARENKGDLVVLWLDLTNAYGSIPHKLVEEALRRHYIPDRFRDLILDYYNNFSLRVSAGCTTSDWHRLEKGIITGCTISVILFALAMNMLV-----KAAEVQCRGPLTKSGVRQPPIRAFMDDLTVTTPHVPGARWILKGLEEITTWA-RMCFKPTKSRSLVLKKGKVSNKFRFTLGTTQVPSITEKPVKSLGKVFDCSLKDTAAICATNLELEGWLAAVDKSGLPGKFKAWIYQHGILPRILWPLLIYEVPISTVEGFERRVSRFLRKWLGLPRS 561          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI0007B914E4 (uncharacterized protein LOC107731099 n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007B914E4)

HSP 1 Score: 150 bits (380), Expect = 1.850e-37
Identity = 96/297 (32.32%), Postives = 148/297 (49.83%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTI--TMLLKASKCRSWAIGRVSALEYRKFTTNVY---SVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +PGV GCLEH   +   +++A+E    + V +LDL  AY S+ H LV+ AL  +H P  +  L+ +YY     RV T +  SD     +G+  GCT SV +F +   +L+     KA     R       + + P  AF DD+  V+ATA      I   Q ++ W     M  K +K RS  + +    +  +F    Y   SV +  +K  G+V  C   D+++       LEGWL  VD   LPG +K W+  + +  R++W L++Y+VP TVV G+  +     ++WLG+ RS
Sbjct:  369 IPGVPGCLEHTGVVTQLIREAREGRGDLAVLWLDLTNAYGSIPHMLVKVALEKHHVPQKVKDLILDYYSKFSLRVTTGQLTSDWHQLEVGIITGCTISVTLFALAMNMLV-----KAAETECRGPLSKSGVRQPPIRAFMDDLT-VTATAVPGARWI--LQGLMTWMTWARMSFKPAKSRSLVLKKTDRSDRFRFRLGEYQIPSVTESPVKSLGKVFNCRLSDRDSIKAAGADLEGWLRTVDKSGLPGRFKAWVYQHGILPRILWPLLIYEVPMTVVEGFEQKVSSYLRRWLGLPRS 657          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI00094E060A (uncharacterized protein LOC109512320 n=1 Tax=Hippocampus comes TaxID=109280 RepID=UPI00094E060A)

HSP 1 Score: 149 bits (377), Expect = 5.090e-37
Identity = 90/295 (30.51%), Postives = 146/295 (49.49%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAIGRVSALEYRKFTTNVY---SVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +PGV GCLEH   +   +++A+E    + V +LDL  AY S+ H LV  AL  +H P  +  L+ +YY     RV + E  SD     +G+  GCT SV +F +   +L+     KA     R       + + P  AF DD+ + +      +  +   + ++ W   M  K +K RS  + +    +  +F+  V+   SV +  +K  G+V  C   D ++       LEGWL  VD   LPG +K W+  + +  R++W L++Y+VP TVV G+  +     ++WLG+ RS
Sbjct:  129 IPGVPGCLEHTGVVTQLIREAREGRGDLAVLWLDLTNAYGSIPHKLVGVALERHHVPQKVKHLILDYYSKFSLRVSSGEMTSDWHQLEVGIITGCTISVSLFALAMNMLV-----KAAEPECRGPLSKSGVRQPPIRAFMDDLTVTTTAVPGARWILQGLERVMAWA-RMSFKPAKSRSLVLKKGKVTDRFRFSLGVHQIPSVTEKPVKSLGKVFNCSLKDADSIKATSADLEGWLRTVDKSGLPGRFKAWVYQHGILPRILWPLLIYEVPMTVVEGFEQKVSSYLRRWLGLPRS 417          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI000BBDC071 (LOW QUALITY PROTEIN: uncharacterized protein LOC103022744 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=UPI000BBDC071)

HSP 1 Score: 149 bits (377), Expect = 6.230e-37
Identity = 89/295 (30.17%), Postives = 150/295 (50.85%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAIGRVSALEYRKFTTN---VYSVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +PG+ GCLEH   +   + +A+EN   + V +LDLA AY S+ H LV  AL  YH P+ +++L+++YY     R  +    S       G+  GCT SVV+F +   +L+     KA  +  R       + + P  AF DD+ + + T    +  +   + I+ W   M+ K  K RS  + +   +E  +F  +   + SV +  +K  G++      DK A    +  L+ WL+ V+   LPG +K WI  + +  R++W L++Y+VP T+V GW     +  ++WLG+ +S
Sbjct:  393 VPGMPGCLEHTGVVTQLIGEARENRGDIAVIWLDLANAYGSIPHKLVSTALTTYHVPEKINELIWDYYSNFSLRFTSGSVTSAWHRLEKGIITGCTISVVLFALAMNMLV-----KAAEVECRGPLSRSGIRQPPIRAFMDDLTVTATTVTGCRWLLRGLERIITWA-RMMFKPGKSRSLVLRKGRVVEKYRFNLDGVLIPSVSEKPVKSLGKIFDSTLKDKAAVQSTQAELKSWLSAVEKSGLPGKFKAWIYQHGILPRILWPLLIYEVPITIVEGWERNISQYLRRWLGLPKS 681          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI001054B77D (LOW QUALITY PROTEIN: uncharacterized protein LOC114470705 n=6 Tax=Gouania willdenowi TaxID=441366 RepID=UPI001054B77D)

HSP 1 Score: 147 bits (371), Expect = 3.900e-36
Identity = 92/295 (31.19%), Postives = 151/295 (51.19%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAI--GRVSA-LEYRKFTTNVYSVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +P V+GCLEH   +   +++A+EN   + V +LDLA AY S+ H LV+ AL  +H P  +  L+ +YY     RV +    SD      G+  GCT SV++F +   +L+     K+  +  R       + + P  AF DD+ + + +    +  +   +E++ W   M  K +K RS  +  G+V+    +   TT + S+ +  +K  G+V  C   D  ++      LE WLA VD   LPG +K WI  + +  R++W L+VYD P + V G+  +  R  ++WLG+ RS
Sbjct:  382 IPKVSGCLEHTGVVTQLIREARENKGDLAVLWLDLANAYGSIPHKLVEEALNRHHVPKKVKDLILDYYSNFSLRVSSGSTTSDWHKLGKGIITGCTISVILFALSMNMLV-----KSAEVQCRGPFSKSGVRQPPIRAFMDDLTVTTTSVPGCRWILSGLEELISWA-RMSFKPAKSRSLVLKKGKVTGKFSFSLDTTKIPSLTEKPVKSLGKVFNCSLRDAASTQSTNQELETWLAAVDKSGLPGKFKAWIYQHGILPRILWPLLVYDFPISTVEGFEMRVSRFLRRWLGLPRS 670          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI001C905935 (uncharacterized protein LOC122394452 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C905935)

HSP 1 Score: 145 bits (365), Expect = 2.430e-35
Identity = 76/213 (35.68%), Postives = 124/213 (58.22%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDY---HAFKAFALVYRFKQDPELLLRDPAFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAIGRVSALEYRKFTTNVYSVYDPKLKVKGEVI 630
            LPG++GC+EH   ++ A++DAK   + + V +LDLA AY SV+H+L+QFA  WYH PD L K++ +YY+ L  ++ T EW +D  ++  G+FQGC  SVV+FL+VFQ+ LD    H+ + + +      +        A+ADD+ L++      ++ +   +  L W+ TM  K +KCRS +  ++         T+  +  DP+L + GE I
Sbjct:  272 LPGISGCVEHTQALMEALQDAKRRKKEITVCWLDLANAYGSVSHNLIQFAAEWYHVPDILRKIIHSYYDDLAVKISTHEWTTDKISYEQGLFQGCPLSVVLFLMVFQICLDQLSKHSNRGYNVGTGSPHNQR------AYADDLTLIAKNKTSAEMMLATVEHFLRWSATMRAKPAKCRSLSFVKIPG-------TSTMAPTDPELFIHGEAI 471          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: A0A3B1JAJ2_ASTMX (Reverse transcriptase domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1JAJ2_ASTMX)

HSP 1 Score: 145 bits (365), Expect = 2.440e-35
Identity = 88/298 (29.53%), Postives = 151/298 (50.67%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELL--LRDP---AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAIGRVSALEYRKFT---TNVYSVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +PGV GCLEH   +   +++A+EN   + V +LDLA AY S+ H LVQ  L  +H P  +++L+ NYY+    RV T    S+     +G+  GCT SV++F++   +L+     +         + P+ +  +R P   AF DD+ + + +   ++  +   +E+  W   M  K  K RS  + R   ++  +F+    ++ +V +  +K  G+       D  +       LE WL  VD   LPG +K WI  + +  R++W L+VY+VP ++V G   +     ++WLG+ RS
Sbjct:  372 IPGVPGCLEHTGVVTQLIREARENKGDLAVLWLDLANAYGSIPHKLVQTTLERHHVPGQVAELIMNYYDQFSMRVSTGSITSEWHRVEVGIITGCTISVILFVLAMNMLVKSAETQC--------RGPKTMTGVRQPPVRAFMDDLTITTESVPGSRWILQGLEELCGWA-RMRFKPEKSRSLVLKRGKVVDKFRFSIGGASIPTVSEKPVKSLGKEFNSSLKDSVSVQGTCQELESWLRAVDRSGLPGKFKAWIYQHGILPRVLWPLLVYEVPISIVEGLERKVSSFLRRWLGLPRS 660          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: UPI0010550A85 (LOW QUALITY PROTEIN: uncharacterized protein LOC114466921 n=1 Tax=Gouania willdenowi TaxID=441366 RepID=UPI0010550A85)

HSP 1 Score: 144 bits (364), Expect = 2.810e-35
Identity = 91/297 (30.64%), Postives = 152/297 (51.18%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAI----GRVSA-LEYRKFTTNVYSVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +P V+GCLEH   +   +++A+EN   + V +LD+A AY S+ H LV+ AL  +H P  +  L+ +YY     RV +    SD      G+  GCT SV++F +   +L+     K+  +  R       + + P  AF DD+ + + +    +  +   +E++ W   M  K +K  SW++    G+V+    +   TT + S+ +  +K  G+V  C   D  ++      LE WLA VD   LPG +K WI  + +  R++W L+VYD P + V G+  +  R  ++WLG+ RS
Sbjct:  123 IPKVSGCLEHTGVVTQLIREARENKGDLAVLWLDVANAYGSIPHKLVEEALNRHHVPKKVKDLILDYYSNFSLRVSSGSPTSDWHKLGKGIITGCTISVILFALSMNMLV-----KSAEVQCRGPLSKSGVRQPPIRAFMDDLTVTTTSVPGCRWILSGLEELISWA-RMSFKPAK--SWSLVLKKGKVTGKFSFSLGTTKIPSLTEKPVKSLGKVFNCSVKDAASTQSTNQELETWLAAVDKSGLPGKFKAWIYQHGILPRILWPLLVYDFPISTVEGFEMRVSRFLRRWLGLPRS 411          
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Match: A0A498LG40_LABRO (Reverse transcriptase n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498LG40_LABRO)

HSP 1 Score: 143 bits (360), Expect = 1.130e-34
Identity = 86/295 (29.15%), Postives = 145/295 (49.15%), Query Frame = 1
Query:    1 LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFALRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVVIFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDP--AFADDVALVSATAAENQLSIDIFQEILDWTITMLLKASKCRSWAI--GRVS-ALEYRKFTTNVYSVYDPKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNYVVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS 870
            +PGV GCLEH   +   +++A+E    + V +LDL  AY S+ H LV+ AL  +H P  +   + +YY     RV + +  +D     +G+  GCT SV +F +   +++     KA     R       + + P  AF DD+ + + T    +  +   + ++ W   M  K  K RS     G+V+    +R     + SV +  +K  G+   C  +D+++       +EGWL  VD   LPG +K W+  + +  RL+W L++Y+VP TVV G+  +     ++WLG+  S
Sbjct:  495 IPGVPGCLEHTGVVTQLIREAREGRGDLAVLWLDLTNAYGSIPHKLVEVALEKHHVPQKVKGFILDYYSKFSLRVSSGQLTTDWHQLEVGIITGCTISVTLFALAMNMMV-----KAAETECRGPLSKSGVRQPPIRAFMDDITVTTTTVPGARWILQGLERLMVWA-RMSFKPGKSRSLVRKKGKVTDEFRFRLGQHQIPSVTEKPVKSLGKAFSCSLNDRDSIRESSTDMEGWLRAVDRSGLPGRFKAWVYQHGILPRLLWPLLIYEVPMTVVEGFEQKVSSYLRRWLGLPHS 783          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig802.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00094E99E45.840e-3930.51uncharacterized protein LOC109521869 n=1 Tax=Hippo... [more]
UPI0019559B9E1.100e-3833.56uncharacterized protein LOC120471856 n=1 Tax=Pimep... [more]
UPI0007B914E41.850e-3732.32uncharacterized protein LOC107731099 n=1 Tax=Sinoc... [more]
UPI00094E060A5.090e-3730.51uncharacterized protein LOC109512320 n=1 Tax=Hippo... [more]
UPI000BBDC0716.230e-3730.17LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]
UPI001054B77D3.900e-3631.19LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
UPI001C9059352.430e-3535.68uncharacterized protein LOC122394452 n=1 Tax=Amphi... [more]
A0A3B1JAJ2_ASTMX2.440e-3529.53Reverse transcriptase domain-containing protein n=... [more]
UPI0010550A852.810e-3530.64LOW QUALITY PROTEIN: uncharacterized protein LOC11... [more]
A0A498LG40_LABRO1.130e-3429.15Reverse transcriptase n=2 Tax=Labeo rohita TaxID=8... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig802contigH-akashiwo_Contig802:394652..395581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog27923.ML005011a-PA
PFAMsRVT_1
Model size870
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.8e-51
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39MT6@33154|Opisthokonta,3BKSP@33208|Metazoa
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size870
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387990.3994746-CDS-H-akashiwo_Contig802:394651..3953221681387990.3994746-CDS-H-akashiwo_Contig802:394651..395322Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig802 394652..395322 +
1681387990.4115963-CDS-H-akashiwo_Contig802:395382..3955811681387990.4115963-CDS-H-akashiwo_Contig802:395382..395581Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig802 395383..395581 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig802.19.1prot_H-akashiwo_Contig802.19.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig802 394652..395581 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig802.19.1

>prot_H-akashiwo_Contig802.19.1 ID=prot_H-akashiwo_Contig802.19.1|Name=mRNA_H-akashiwo_Contig802.19.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=290bp
LPGVAGCLEHAAKMLAAMKDAKENMRSMCVSFLDLAGAYPSVAHSLVQFA
LRWYHFPDWLSKLLFNYYECLCARVVTAEWESDLFTFLIGVFQGCTASVV
IFLVVFQVLLDYHAFKAFALVYRFKQDPELLLRDPAFADDVALVSATAAE
NQLSIDIFQEILDWTITMLLKASKCRSWAIGRVSALEYRKFTTNVYSVYD
PKLKVKGEVIMCIADDKEASLMFKLLLEGWLARVDGCSLPGAYKVWIVNY
VVYSRLVWHLVVYDVPDTVVRGWRHQCVRMFKKWLGVTRS
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mRNA from alignment at H-akashiwo_Contig802:394652..395581+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig802.19.1 ID=mRNA_H-akashiwo_Contig802.19.1|Name=mRNA_H-akashiwo_Contig802.19.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=930bp|location=Sequence derived from alignment at H-akashiwo_Contig802:394652..395581+ (Heterosigma akashiwo CCMP452)
CTGCCTGGGGTAGCAGGGTGCCTAGAACATGCTGCCAAGATGCTGGCTGC TATGAAGGATGCCAAGGAGAATATGAGGTCTATGTGTGTCAGCTTTCTGG ACTTGGCAGGTGCATACCCGTCTGTAGCCCATAGCTTGGTGCAATTTGCA CTGCGCTGGTATCACTTCCCAGACTGGCTTTCTAAGCTTCTGTTTAACTA CTATGAATGTTTGTGCGCGCGCGTGGTGACGGCCGAGTGGGAGTCTGACC TCTTTACGTTCCTTATAGGTGTGTTCCAGGGGTGCACTGCTTCTGTAGTT ATTTTCTTGGTTGTCTTTCAAGTGCTGTTGGATTACCATGCCTTTAAAGC CTTCGCCCTAGTCTACCGCTTTAAGCAGGACCCGGAGCTGCTGCTTCGGG ACCCAGCGTTTGCGGATGACGTGGCACTGGTGTCTGCGACTGCAGCTGAA AACCAGTTGTCCATTGACATATTTCAAGAGATTTTGGACTGGACAATAAC GATGCTGCTGAAGGCGTCCAAGTGCCGCTCATGGGCCATTGGCAGGGTGA GTGCCCTGGAATACCGCAAGTTTACTACTAATGTGTACTCTGTGTATGAC CCTAAGCTTAAGGTTAAGGGCGAGGTAATAATGTGTATTGCTGATGATAA GGAGGCCTCCCTTATGTTCAAGTTGTTAGGGGTCCTGGTGCAGTGGGATC TCCGGTCCGACCGCATCTTTGAGCGCCTGAGGTTGCTGCTGGAGGGCTGG CTGGCCCGGGTGGACGGGTGCTCGCTGCCGGGCGCCTATAAAGTGTGGAT TGTGAACTATGTGGTATATTCCAGGCTTGTGTGGCACCTGGTGGTCTACG ATGTCCCGGATACAGTAGTGCGCGGGTGGAGGCACCAGTGTGTCCGGATG TTCAAGAAGTGGCTGGGTGTCACCCGGTCT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig802:394652..395581+

>mRNA_H-akashiwo_Contig802.19.1 ID=mRNA_H-akashiwo_Contig802.19.1|Name=mRNA_H-akashiwo_Contig802.19.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=870bp|location=Sequence derived from alignment at H-akashiwo_Contig802:394652..395581+ (Heterosigma akashiwo CCMP452)
CTGCCTGGGGTAGCAGGGTGCCTAGAACATGCTGCCAAGATGCTGGCTGC
TATGAAGGATGCCAAGGAGAATATGAGGTCTATGTGTGTCAGCTTTCTGG
ACTTGGCAGGTGCATACCCGTCTGTAGCCCATAGCTTGGTGCAATTTGCA
CTGCGCTGGTATCACTTCCCAGACTGGCTTTCTAAGCTTCTGTTTAACTA
CTATGAATGTTTGTGCGCGCGCGTGGTGACGGCCGAGTGGGAGTCTGACC
TCTTTACGTTCCTTATAGGTGTGTTCCAGGGGTGCACTGCTTCTGTAGTT
ATTTTCTTGGTTGTCTTTCAAGTGCTGTTGGATTACCATGCCTTTAAAGC
CTTCGCCCTAGTCTACCGCTTTAAGCAGGACCCGGAGCTGCTGCTTCGGG
ACCCAGCGTTTGCGGATGACGTGGCACTGGTGTCTGCGACTGCAGCTGAA
AACCAGTTGTCCATTGACATATTTCAAGAGATTTTGGACTGGACAATAAC
GATGCTGCTGAAGGCGTCCAAGTGCCGCTCATGGGCCATTGGCAGGGTGA
GTGCCCTGGAATACCGCAAGTTTACTACTAATGTGTACTCTGTGTATGAC
CCTAAGCTTAAGGTTAAGGGCGAGGTAATAATGTGTATTGCTGATGATAA
GGAGGCCTCCCTTATGTTCAAGTTGCTGCTGGAGGGCTGGCTGGCCCGGG
TGGACGGGTGCTCGCTGCCGGGCGCCTATAAAGTGTGGATTGTGAACTAT
GTGGTATATTCCAGGCTTGTGTGGCACCTGGTGGTCTACGATGTCCCGGA
TACAGTAGTGCGCGGGTGGAGGCACCAGTGTGTCCGGATGTTCAAGAAGT
GGCTGGGTGTCACCCGGTCT
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