mRNA_H-akashiwo_Contig80.39.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-akashiwo_Contig80.39.1
Unique Name	mRNA_H-akashiwo_Contig80.39.1
Type	mRNA
Organism	Heterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-akashiwo_Contig80.39.1 vs. uniprot

BLAST of mRNA_H-akashiwo_Contig80.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-akashiwo_Contig80	contig	H-akashiwo_Contig80:1780634..1788545 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Heterosigma akashiwo CCMP452 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Model size	433
Hectar predicted targeting category	other localisation
Exons	4
Cds size	432

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681387987.5592523-CDS-H-akashiwo_Contig80:1780633..1780769	1681387987.5592523-CDS-H-akashiwo_Contig80:1780633..1780769	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig80 1780634..1780769 +
1681387987.5694718-CDS-H-akashiwo_Contig80:1785082..1785166	1681387987.5694718-CDS-H-akashiwo_Contig80:1785082..1785166	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig80 1785083..1785166 +
1681387987.5822892-CDS-H-akashiwo_Contig80:1785446..1785556	1681387987.5822892-CDS-H-akashiwo_Contig80:1785446..1785556	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig80 1785447..1785556 +
1681387987.598231-CDS-H-akashiwo_Contig80:1788443..1788545	1681387987.598231-CDS-H-akashiwo_Contig80:1788443..1788545	Heterosigma akashiwo CCMP452	CDS	H-akashiwo_Contig80 1788444..1788545 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-akashiwo_Contig80.39.1	prot_H-akashiwo_Contig80.39.1	Heterosigma akashiwo CCMP452	polypeptide	H-akashiwo_Contig80 1780634..1788545 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-akashiwo_Contig80:1780634..1788545+
coding sequence from alignment at H-akashiwo_Contig80:1780634..1788545+

protein sequence of mRNA_H-akashiwo_Contig80.39.1

>prot_H-akashiwo_Contig80.39.1 ID=prot_H-akashiwo_Contig80.39.1|Name=mRNA_H-akashiwo_Contig80.39.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=144bp
VLDGGDGHGGQQPAAGGAAVAAAPAHRGVHHRGHGPGCGERPPGRGPLAA
REPLRGLHHRRHGRRGPQRPPASGHVAAQAPRRGLHHGRHRPRGAQRPPA
GGGVAPRQPQRGAHRGGHRRGGRQRALRRVGVAERQLRALRLRE

mRNA from alignment at H-akashiwo_Contig80:1780634..1788545+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-akashiwo_Contig80.39.1 ID=mRNA_H-akashiwo_Contig80.39.1|Name=mRNA_H-akashiwo_Contig80.39.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7912bp|location=Sequence derived from alignment at H-akashiwo_Contig80:1780634..1788545+ (Heterosigma akashiwo CCMP452)
GTGCTCGACGGCGGCGATGGACACGGCGGCCAGCAACCGGCGGCTGGCGG
TGCTGCGGTGGCTGCAGCGCCGGCGCACCGAGGGGTGCACCACCGCGGCC
ATGGACCTGGCTGCGGAGAACGGCCACCTGGACGTGGTGCGAGGGGCGGG
CGGGGGGAGGAGGGGCGCACTGTATACGTGCTGTTGGGTTCCTCCTGGAA
GCTGCTGGATGGGCAAGAGGGCGGGGTTCGGCCCGCAACTGGGCGTGGGA
CAGACCTTGCGATGACTCTTCTGGCGAAACCCTCGGAGATCGGCTTGGTT
GGCCGCGGCACGCTCACCACGGCACCTTTTTCAAAAGGTGCTATAGAGCA
CTAGAACGAACTTCCAAAGTTAGTCAGTAATCAGACTTGATCCAAAGAAG
TGCATCAGATGCCAAGGCAACTTACAAATGAGCGGTGGTTGTGTGGCTCA
GGAAGTGAAGGCGCACTGTAAGTAGAAACGTGAAAAAAAAAAAAAAAAAA
AAAAAAAACCGCGGGCATATGGGACGATGTTAAGCGGCCCACTCTCCAGC
AGCAGCAAATAGATTTACAAGCAAACACCTTCCTCTTGGAGAAGAATGCA
CACACAGGGCGATGATTGGTAGAGGTACAGTAGCAACAGTTACAGCAAGC
AAATATATGCATGCTGCGCTTATAAAGTTGAAATTAAGTTATAGTTTTAA
AACTGTTTGTGGTATAGTTTTAAAACTGGGCCCAGTTTAAAGCACAACGA
ATTTTGTGGCAATTTTGAAATTGTGTATAGCGAATATTTTCCGCATGGTT
TCAAAATTGACACCGCCAAAATTTGAAAAAATGGATTCATCAATAAAATC
CCGTTAATTCCAGGACTTTCAAAATCATAATATGTGATAAGTGCCCATCA
CTAGCAGCAAGAGCAGCAGCAGCCACATGTCATTACATTCCCTTTCTCTT
TCTTAGTTGCTTGACCGTCGATTCAACCAGCCTTGCCTTGCCTTCGAAGA
ACATGTCTTTCAACAAAGCCCCCACTGCAGGCTTATATTCCTGCGCCCAA
GTTGACCTGATTGATTCCCAGTCCAATGCAGATGGGTCCTTCAAGTTTGT
GCCTTCTTGTATCAAGATCATGCCACATCAAGTTTGCACACTTCCGTGCG
TTGACGGATAAAAGAGTGCGGCCTCAGTTGCCAAAGAACTCCTTGCCATA
TCCCATATCCAAGGAACACCCCTTCTACATACTCCATTCTGACAATGGAA
GAGAATTTGTGAATGAATTAATACAGAATCCTTCTGACAATGGTTTCATC
CGCTGCGTTTGCAAGAAGGGGTGTGGTAAGCGATGCAAATGCAAAAGAAG
TGGCGTAGTGTACAACAGCCGCTGCCATCGTTCTAGGAATTGTGACAGCA
GAGCTGAGCTGAGGCGATAGCCCCTTGTCCAAACTGATTAAAAAACATTG
AAACTCCTTGGTTTACTGCCACAAACACTCTATATATCAGCTGTGTACCA
AAGTCTTAATAATTAACTAAAAGTAGAGTCCCCCCCCCTCCCCGGGCATT
AAGGACTGTGCGCATGAGAGATGGCAGCGGAACCCAGGAGGCCGACGGGC
GACAGCGGTGGTGGCAGTGTATAGGGGGTTGCTAGCAGCTGGGCCCCGGG
CGGCTGGCGGCGGGGGTGGTAGGGCAGGGGAGAGCTGTCAGCTGGGTTGT
TGGGCGGCGCGGGAGGCGGGGGAGGGGAAGCTACAGCAGGGACCGGGGCC
AGAGGCGGAGCGCAGGGAGAAGGGGGCTGTTAGTAGGTTGAAGTAGAGCA
GAAAGCTATCTTTATTTCAACTTTGACATTCATTTTCAACATTGGTGGTG
AAAAGAAGAGAGCAGTTTTGAAACTAATAATACGGTCAGTTTTAAAACTA
ACCACTTATATATTTCAAAATTTATTGTGTGTAGCAACAGTGATCATTTT
TAAAACTACTACGGATTATTTTTAAAACTCGTCACATTTCAACTTTGAAT
GGGTAGTTCTGGTGATCAGTTTTAAAACTATCTCAAGTCAAAACTGAAAT
GTGTGGTTATACATATATAGTAGTTTTAAAACTGGGCCCAATTTGAAGCT
ACCACACACAGTTTTAAAACTAACCACAGTTTTGAGAGAGTTAAATTTAA
CCGAAATAATTTACGCTTTGCATCTGTGCAGATGCCCCTGTGGTAATGTA
CTAAGCCTAAACATGAAACCCCAAACCTGAATCTATAGAACATATACTCC
AAACAAAGATACCGCACACCTCACTATCTCTGGAAGAGAACGGCATCCTC
GAACCCGGAGCTCCTCCACTTCTTCCTGGAGTCCCTGGTCCGCAGATCCA
CTGCTTTGATGAGCGCGAACTACACGCGGACGCACCCAGTTGGTGACTGT
TGAGAGAGGCTTCTGCCACTTTGCCGAGAGCCGAGCAGCAATGCGCCTGA
GGAAAGCCTGCTTGGACTGGTGGGCAATACCATTCACGGTGACTATCAAG
GGGCAGAAAGTAGCACGGCGCTCTTCCGCAGCAGCCTTGTACAAGTTCTT
CACCTTTTCAGGGGCAGAGGTATTGAGGGCATTCTGGTAGGAGATGTGTT
GGTTGGCACGTCCAGGGCTGCCAGCTACACTATAATGTGGGTATATATAT
CAAAAACACAGTCCCTATCAGGTTCCCACACACCCCTCAGCCTCACCACA
AAATCCGCCCTCAAGCCATCGCTACCTCCATCCCTGGCCCGTTGCGACGC
CTCCCTCACCACCGGCTCCCAAGTGCAGTTGTTCCAGGCCTTCCTGCTGA
ACTCCCCCATGACATCCCAGATGAGAGCATGATCGTCTGAAAAACCAACA
CCACACCACGACGTCTCCATCCCCAGACCGAAAAAAACTCATCTGATGAA
AAATACTACATACTGTAGCAAAGAAAGGGAGCCAAATGGGGTTCAAATAT
CTGCCTTTCTGAATATTGCAAGTGTTGGTCACCATAGCAAACATGGCCTC
CTTACTTCAACCTCTTGCCCCCCCCAGTGGGCCTCTCTGCACAGCACCTC
AGCATTGTAAAGTCAAACCGATTTGAAAAGCCAGAATCCAAGCAATGGGC
AGGCAGCCAGTGTCACTCTTTCCCTTTCTGTCAACAAAGTATTGGCTGCC
TCCACCAACGGACCATCTTCCTTCACCCTAGTGGCTATGCTATAGCGATC
TTTTGGTCTGACCAACATAGCTAACCTCACACTGGTTTGGTTACAAGAGA
TTTTGTAAACCCCGTTTTTCTGCTGCATCCTGTCCGTGGCCGGTCTTCTT
GGAGCCAAATAATTGCAAGTTGACCGTTGTCTTGTATAGAGCAGCCTCAA
ATTGTCCACCTGTCTCTCATCATCTCAGATGCTTAAACTGCAGCCCTCCA
CGAAGCATTCTCTTCTGTGATGAAGCTTTTGCATTCTGCTTTTGTCTCTT
CCGAAACTCGCAGGGTCAGAACAACAAACCTGCATCATCAGAACAATTGG
TATATCAGAGACTTGCTGCTCAGTTTTTGTTCCGAAGGCCCAGTTGATCA
AATTCTTTTTGTATGTATATACTGCTTTCCTCTTCATTTGCTGCAAATTA
TTTGTGCTGATCGATGGTGGTCTTATTAAGTATTTGTTCTTCACTTTTCT
TTTTGTGTGTTCTGTTGCTTTCTTTGTTCCTTTAGTCTGACTCTGTTGTA
GTTTGACTTGCACGAGGACAGCACCACCACAACTATATATACCACGGCAA
CAATATTTGGGGCTGCAGTCTGCTGCTGTACACGTCTTACCATGCCCCAC
ACTGCTATTAACTTCCAACCACCACTCTAAAAAACACCCCCAAATGAAAC
AATAAACTTCAACAAGAATCTGCAAAGGCTCTGCACCTCGTAGTAGCAAA
GTACACTCATCCAACTTGACTCTGTGATCACCAGCTAGTAGAGCCTAACA
TAGCATAACAACAAGAAAAGTTGGGAGCGACGGCTGACCCTCCAACAGCC
AGATACCACCTTGTTTTGCAGTGCCAAAGGGTAGATAATTGGCATTATTA
GCAATTGAGCATGATGGTTATACATGTATATGGGTTTGCATGTTCATACA
TGTCATGAGGAGCTGAGTTTCCTACCAGCTTACGGTTCCAATGGTATAGT
GGGCATGGCCAATGTAGGGATGCTACGAATAAACCTCGAATCGTAAGGAA
TGTTTGATTGGTTTACGGTATACGTTTGGGTGGCTTGGCTCCTGTTTTGA
AAGGCGCTGTGTGTGCGGCATCCCCGCCTCTGCCTGCATGTATAGAATGT
TTCAAATCCCAAGCCAATTTCCCGGTAATTTTGTGCAGCATACAAGATTC
ATCCATAATTGATTTGATCTACTTTGAACTGTGTATCGTGCTGTGCCAAC
GCCACCCACACCTCATCGTGCGCCCCCCCTCCCGTGCCGCCCCGCCCAGG
TCCGCTGGCTGCACGAGAACCGCTTCGAGGGCTGCACCACCGCCGCCATG
GACGGCGCGGCCCGCAACGGCCACCTGCCAGTGGTGGGGACAGACGGGGC
TCTCGCCGGGGAGTGGACCAAGGATTGGTCAGGCTTGCGCTCGCGTGGTC
GGGGGGTCGCGCCCGGATCTTCGTGGGTGTGCGACCTTTTACCTTGTACG
TAAAGACTGGCCCTGTGCGAGTCTTCAGCCTCATGGGTGGCGACCTGCCC
CTTTTAGGTCAAGGTACCAAACGCCCGCGCCCAAAGGAGACACGCCTCCC
TTGCGCCCCCCCGCTCCCCGCCTCCTCCCGCCCGCCTTCCCGCCCCGCCG
CCGCCGCCGCCAGGTCACGTGGCTGCACAAGCACCGCGCCGAGGGCTGCA
CCACGGGCGCCATCGACCGCGCGGCGCGCAACGGCCACCTGCGGGTGGTG
GAGTGGCTCCACGCCAACCGCAGGTTGGGGAGGGACACGTTCTCGTGCCT
CGTCGCATCCTGAGGAAGGTCCTCCACTCCGGCCGACCGTCATGTTGAGC
CATCTCTGAGCTTGTCGATGCGAACCTTGTAGTGTTGGCGCTCGTATCAT
CGCGCCTCCTTCCAATGCTCGCGAACATCTCCTTGATGCACCTCGGGCCA
CCATCCTTCGTTGACGACCTCCTTCTGTTATCGCTCTGTCAGGTCGTTGT
ACCCTTCCGTAAGTCGCCCACTCGTGGAGTTTCGACTCAACTCCACCCAC
GCCATTCCTCCACATCAGCATCGTATCCAATCCTTGCCCTCTTCCGACTA
CCGAGATCCGATGACTGGTCCATGCTCTGAAGTGTATCCAGGCATTGACT
GCACGCGCACTGTAGGGCTCGAACTCGCGGCCCACAGTTCATCGCAACGG
CAGTTTCCTCCTCTAACGATTGAAAAGCAAGTCCTTTGATTTGGTGAACC
CCTACTTGCCAGGAGAAAATCACAGAAGGATAAACAGTAGCGGGGTAAAA
CACTTTGTTTGTGAAATAGTATTTGATATCGTCGGATACGTTTTGTTACA
AGTTGAATGCCACGTACACTATGGTGCAATGTGGTAAGGGTGGTGTTTGA
AGATTTAACTCAAATTGTCCGTCGCAAATCGAAAAAACTGGTGACACTTT
GCACTAGGTCATTTTTAAAGTAGATTCCAAAAAAAAATATCCATTGGATG
TGGTTTTTGTTTTTTCCCTAGCTTTTGACCCCCGGACCCCTCGCCCGGGG
TGGCTGAAAATCACCCCTCAAGAAAAATCACGGTCAATGGACTATTTTTC
TGGATTCTACGCAAAAAATGATGGCGGTGGCGACGGGAACATAGCATGGG
CGACGGCGCCAGCGGCGACGCCCACCGTGGCTGCGACGGGAACAGTGGCG
ATGGCGCCAGCGGCGACGccCACGGCGGCCCCCACGGCGGCGGCGACAAC
GGCGAAAACTCTGACTACGGGACCCGACTACTAAGAGGGCGGCGGCAGCG
AGACCTCTTTCTTCCTCCAGGAGGAGGAGGTCATCGACTACGACTCACCA
ATCTGGGACTAGTTAGCTTTCAACTAGGACCCATTCCACCGCTTATGCTT
ATTGAATCTGACCAACTTAGTTGGGCACTCGTTGTACCACTTAACTATTA
AAATATTATTCACAAAAATGATCTATAGTGCAAAGTGTCATCAGTTTTTT
GATTTGCGACGGACCATTTGAGTTAAAATTCAAAGAAGTTTCACCCATTT
TGGGGGTGGTTGTGGTGGCTTGGCCGGTTTTTGAATTTCCGTTTCAATTT
TAAAACACGACAACACCCTATTTCTTCTTCTGCTACATAAAACAGTACAA
CAAGTGGGAGAATTTGGGCGAATAGCACCACAACAAGAATTTCACAACAT
GGCTGCAGGGAGGAATACGGCACCACCACCACCAACAACAACAACAGATT
TCCAGCATCGCCGCCAAACAAGAATGGCAAGACTTAGATTTACCACCTGG
AACCATTTTTCACAGTATGTTGGGTTCATTTCACCTGTTATACGTGGTGT
CTTCCACATGTATCGTCGGGTGCAATGGTTTTGGTTCATTTTTTGATGTG
CCTCTCCTTGGTGCCCTCCTTCCATATTTTAATATAACATAAGCAAAAAT
CAGCGACGAGTCGGCAATGGCATCATGCCATTACTTTTCACGGACAAAGA
AGGACCAATGCTGGTTAAATGTGGTCAATATAAACAAAATATAATCGAAA
CATGTAACTATAATAGAAGTCATATATATGTGCGCTGGTAAGTTGCATTG
CCATGTGAAGACATCTCTTTTTGTGCGGATTGATGCATTATGAACTCCTT
CAAAAGGGGCAATTCCCTAGTGTGGGCATCGAAATCGCCAATCCGCCTCC
AGGAACGTCCTAGCATGTTTCTGTATGTCATAAGGTGCCAAGAACTCGCA
TTTTTCTTTTTATACAAGCTTTCTTTGCCGAGATACTGGGGGGTACCTTG
AAACATCAGTCCTAACACTTTGCATCATACATAAAATTTCGCCAGATTTG
TTCTATTTGTTCGCTAAAGCTTTTTGCTGTTGCTCGAGATTTCAAGGGCT
ATGCGTAAACCTTTTTCAAATGGTGTTGTGTGTGGAAAGCTCAGACTCGC
ACTTATTATACTCTCTTATAACCACTTGATTTTTTCCCTGCCTTCTGAAT
AAATAAACACAAACAATGTGGCGATTGAAAATAGGTCTTGGGATCTTCCT
TGTTTGTGGTATATGTAACAACGCCTACTTGTACTGCTTGTACTTACCAG
CCAATTTAGGCTCTATCAGTCCAGTCCATGTATGTTCTCCGAATCGTACG
TATACATAAAACGTGGGATATATACTATAGGCAATGAGTTGGTAACTCTG
GCAGTCTCAAACGGGTTGGAGAAAATTGGATCCTGTGTGTTGGGTATGAA
GATGGTGCAGGTCTGGTTGTCGCCGCAGGAGGGGACACCCTCCTAGTGTG
AGTGAATTGCCGAGACCTTTATAAACTAAGTTTAATATCATCATCATCAT
GATATGCTATAGTATATACATAGTATGTATTACAAAGTACAAAAGTATCG
AGATGTTTGTTCCAGAATAGGATTCAACAGCACAATAATGATCGTGCGGA
AGATTATTTATGTATGATTGATCCACAACACACCAGAAGCATTTTTTCTG
AAATTGATGAGAGATTGATTTGATGATAGAACACTTTCATAATCCAGTGC
GATTTAAATGTTGTTGGCCCTGACTGTTGCAGCAGTGTGTGGTGGCCAAG
CAGGCCTCTTCTCTTTGTCCCTCCCTCCGGTCATTCCTCCTCCCAGCCCC
CCTTTCCCAGCGAGGGGCACACCGAGGAGGCCATCGACGGGGCGGCCGAC
AACGGGCACTTCGACGTGTGGGAGTGGCTGAACGACAACTGCGCGCCCTG
AGGCTGAGGGAG

Coding sequence (CDS) from alignment at H-akashiwo_Contig80:1780634..1788545+

>mRNA_H-akashiwo_Contig80.39.1 ID=mRNA_H-akashiwo_Contig80.39.1|Name=mRNA_H-akashiwo_Contig80.39.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=432bp|location=Sequence derived from alignment at H-akashiwo_Contig80:1780634..1788545+ (Heterosigma akashiwo CCMP452)
GTGCTCGACGGCGGCGATGGACACGGCGGCCAGCAACCGGCGGCTGGCGG
TGCTGCGGTGGCTGCAGCGCCGGCGCACCGAGGGGTGCACCACCGCGGCC
ATGGACCTGGCTGCGGAGAACGGCCACCTGGACGTGGTCCGCTGGCTGCA
CGAGAACCGCTTCGAGGGCTGCACCACCGCCGCCATGGACGGCGCGGCCC
GCAACGGCCACCTGCCAGTGGTCACGTGGCTGCACAAGCACCGCGCCGAG
GGCTGCACCACGGGCGCCATCGACCGCGCGGCGCGCAACGGCCACCTGCG
GGTGGTGGAGTGGCTCCACGCCAACCGCAGCGAGGGGCACACCGAGGAGG
CCATCGACGGGGCGGCCGACAACGGGCACTTCGACGTGTGGGAGTGGCTG
AACGACAACTGCGCGCCCTGAGGCTGAGGGAG