mRNA_H-akashiwo_Contig80.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig80.4.1
Unique NamemRNA_H-akashiwo_Contig80.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig80.4.1 vs. uniprot
Match: A0A7S3UVH7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVH7_HETAK)

HSP 1 Score: 161 bits (407), Expect = 8.990e-45
Identity = 82/96 (85.42%), Postives = 83/96 (86.46%), Query Frame = 3 
Query:  165 GLECALHVGSWRCCRGATGC*TP-LKRACSADVQAKCREVKHGESRVLACLHMNRQHISDSCGAELARVKLPKKVEKQFAQLEVTVGEGDWLELRG 449
            GLECALHV      +G      P LKRACSADVQAKCREVKHGESRVLACLHMNRQHISDSCGAELARVKLPKKVEKQFAQLEVTVGEGDWLELRG
Sbjct:  324 GLECALHVRELEVLQGRDWLLNPALKRACSADVQAKCREVKHGESRVLACLHMNRQHISDSCGAELARVKLPKKVEKQFAQLEVTVGEGDWLELRG 419
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig80.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3UVH7_HETAK8.990e-4585.42Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig80contigH-akashiwo_Contig80:399147..401150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size449
Hectar predicted targeting categoryother localisation
Exons4
Cds size276
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig80.4.1prot_H-akashiwo_Contig80.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig80 399858..401144 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387987.107381-UTR-H-akashiwo_Contig80:399146..3992561681387987.107381-UTR-H-akashiwo_Contig80:399146..399256Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig80 399147..399256 -
1681387987.1164525-UTR-H-akashiwo_Contig80:399800..3998571681387987.1164525-UTR-H-akashiwo_Contig80:399800..399857Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig80 399801..399857 -
1681387987.1558645-UTR-H-akashiwo_Contig80:401144..4011501681387987.1558645-UTR-H-akashiwo_Contig80:401144..401150Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig80 401145..401150 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387987.1256444-CDS-H-akashiwo_Contig80:399857..3998761681387987.1256444-CDS-H-akashiwo_Contig80:399857..399876Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 399858..399876 -
1681387987.1358426-CDS-H-akashiwo_Contig80:400139..4002491681387987.1358426-CDS-H-akashiwo_Contig80:400139..400249Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 400140..400249 -
1681387987.1459656-CDS-H-akashiwo_Contig80:400997..4011441681387987.1459656-CDS-H-akashiwo_Contig80:400997..401144Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig80 400998..401144 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig80.4.1

>prot_H-akashiwo_Contig80.4.1 ID=prot_H-akashiwo_Contig80.4.1|Name=mRNA_H-akashiwo_Contig80.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=92bp
MKTMVLDYKNKPGMREACEDDVRALCGEDGAEGGDYANTVDCLKDQKDKG
APGAWSARCMSGAGGVAGARLAAEPRSSAPAPPTCRQSAAR*
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mRNA from alignment at H-akashiwo_Contig80:399147..401150-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig80.4.1 ID=mRNA_H-akashiwo_Contig80.4.1|Name=mRNA_H-akashiwo_Contig80.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2004bp|location=Sequence derived from alignment at H-akashiwo_Contig80:399147..401150- (Heterosigma akashiwo CCMP452)
CAGACCATGAAGACCATGGTGCTGGACTACAAGAACAAGCCGGGGATGCG
CGAGGCCTGCGAGGACGACGTTCGCGCGTTGTGCGGGGAGGACGGCGCCG
AGGGGGGCGACTACGCCAACACCGTCGACTGCCTCAAAGACCAGAAGGAC
AAGGTCCGCCGCCGCCGCTTTCGCTGCCCCGGGGGGGCGGGGGCGGGGGG
CGGGGCCCGTGCCGCCGCTGCTTTGGAGGGGGTCGGACGGGCAAGAGGCA
TAGTATTTTGAAGGGGTTGGGGTCCAGGCAACCCGCACAAGAATGCTTAA
TGATTTTGATGAGTAGCGCTTTCAAATTTCAAAGGCTTAGATGGGTTGTT
TAAATTGAGCCAAGGTTGTTTGGGAACTGCTGCATACTAGTAATAGTGCA
CTGTACACTTCTGTTTTGATAGGTTTGGACAAGCTTTGTACCTGGTTTGG
AAAAGACTGTCCAGTCACTAGTGCTCTAACCCCTCCCCGATCGGTCCTAA
CAGAAGATATCTACGCAACCGTCGTCCTATACTGCTTTCCCCAACCAACC
ATCCCTCAGCCCTTTTCCTTCACGGCCCCTCACCCACCCAACCCAGAACT
GCCTGGTGGTGTGTAACTTAATCGTAACCCCCTCTCATGGAAGACAACTA
CTATACTTAAGCAGTTGAAGATTAGTATAGAAGTATCGCAACAGTCAACA
CAATGGTTAATTTATTTTCAACTATTCTGAATGCTGAATCGAAGAAAGGG
AGAACAAAACATACTCTATCACATGTGGCTTGTGATGATTGGAGGATGTG
AGAAGCAAAAGGCGATCGCCCCAGTCCCACGTCCCGCGGGCTGTTCGGTG
CTGTTTTCCCCGCACGGGCGGGGCGGGCGGGCGGGCGGGCGGGGGGGGCA
GGGGGCGCCAGGGGCCTGGAGTGCGCGCTGCATGTCGGGAGCTGGAGGTG
TTGCAGGGGCGCGACTGGCTGCTGAACCCCGCTCAAGCGCGCCTGCTCCG
CCGACGTGCAGGCGAGGCCTGGGCGGGGCCGGGGCGGGCGGCGGCAGTGT
AGGGTGGCGGCACCGTACTGGCGGAGCGCTGGGGGGTTGGGTTCGCCGTC
ACTGCGGCTTGTGGTGTTCAGGAAGCAGCGCTTTACAGCACAATAAATTT
AGTGCATGATGTATTGATTGATGTCACAAATCGCATTTACATGTATGATT
ATTGCCCTGGCAATGCACTAATTACTGTGGAATCAATGTGGGAGTCCTTT
TGTTAATGTATTTTTTCTTTACAGGCAAAGTGCCGCGAGGTGAAACACGG
TGAAAGCCGGGTGCTCGCATGCCTTCACATGAACAGGCAGCACATCTCTG
GTAAGGAAGGGTACACAGACAGTGCACACGCTAATGATTATACATCTCTA
TTCTATGATAGGGACATTGTTGCTGTGGAACACTCTGGGTGGTGTTCGGT
TGCGTAGCTCTCCCTTGCATCATGTAGGCCAGGTGAGTTTGTGTCTGCCA
TGATGTACTATGACAGGCAATAACATTCCCACCACTTACGTAGAATGGGC
CCTGCCGCAAGAATACAAATGGTATAATAATAGTATAGTTGAAATATGTG
GTATTTGGAGCAGTATTTGGGCGCCAAGCCCATGATGCAACAGTGAACAA
GACCCCGATCAGGGAGCTTGAGACCTCCACTGAAAGCCACAGCCTTTTGC
GATAAACTCACCCCTACAGCACCCAAAGCTATCATTTCTTCTTGAAAAGC
AGAACAGCAGCTATGTTGTCATGTTGCGTTGAAAAGGCTTTCAAATCAAA
AAAAGATTAACCCATGAAGCTCTAACCCGACTGGCTTTGCCCCCTCTCTC
CACCGCCCCCTGCCAACCCACCCACCCCGCCCCTCCTCCGCCAGACTCCT
GCGGGGCGGAGCTGGCCCGGGTGAAGCTGCCCAAGAAGGTGGAGAAGCAG
TTCGCCCAGCTGGAGGTCACCGTGGGGGAGGGGGACTGGCTCGAGCTGCG
CGGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig80:399147..401150-

>mRNA_H-akashiwo_Contig80.4.1 ID=mRNA_H-akashiwo_Contig80.4.1|Name=mRNA_H-akashiwo_Contig80.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=276bp|location=Sequence derived from alignment at H-akashiwo_Contig80:399147..401150- (Heterosigma akashiwo CCMP452)
ATGAAGACCATGGTGCTGGACTACAAGAACAAGCCGGGGATGCGCGAGGC
CTGCGAGGACGACGTTCGCGCGTTGTGCGGGGAGGACGGCGCCGAGGGGG
GCGACTACGCCAACACCGTCGACTGCCTCAAAGACCAGAAGGACAAGGGG
GCGCCAGGGGCCTGGAGTGCGCGCTGCATGTCGGGAGCTGGAGGTGTTGC
AGGGGCGCGACTGGCTGCTGAACCCCGCTCAAGCGCGCCTGCTCCGCCGA
CGTGCAGGCAAAGTGCCGCGAGGTGA
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