mRNA_H-akashiwo_Contig8.123.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.123.1
Unique NamemRNA_H-akashiwo_Contig8.123.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.123.1 vs. uniprot
Match: A0A7S3XN03_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN03_HETAK)

HSP 1 Score: 212 bits (540), Expect = 1.480e-68
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = -1 
Query:   37 APRQARRVPPSSSATERAGTVPNGALLPGEDAPNRKPRVRAPPSSAEKSADRHXXXXXXXXXXXAGLGAGSAAAGLWGTERNVPGNFQERSGPFLQVGRQRRPVLSTCSARSVRPCLSSR 396
            APRQARRVPPSSSATERAGTVPNGALLPGEDAPNRKPRVRAPPSSAEKSADRHXXXXXXXXXXXAGLGAGSAAAGLWGTERNVPGNFQERSGPFLQVGRQRRPVLSTCSARSVRPCLSSR
Sbjct:   38 APRQARRVPPSSSATERAGTVPNGALLPGEDAPNRKPRVRAPPSSAEKSADRHXXXXXXXXXXXAGLGAGSAAAGLWGTERNVPGNFQERSGPFLQVGRQRRPVLSTCSARSVRPCLSSR 157
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BLAST of mRNA_H-akashiwo_Contig8.123.1 vs. uniprot
Match: A0A7S3UTS3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTS3_HETAK)

HSP 1 Score: 110 bits (274), Expect = 1.240e-28
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = -3 
Query:    2 GNGKERSWKFPGTLRTVPPGWPSEAAGLEHLQRAVGAPLPQQQVGQGLERARVRR 166
            GN +ERSWKFPGTLRTVPPGWPSEAAGLEHLQRAVGAPLPQQQVGQGLERARVRR
Sbjct:   24 GNQEERSWKFPGTLRTVPPGWPSEAAGLEHLQRAVGAPLPQQQVGQGLERARVRR 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XN03_HETAK1.480e-68100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UTS3_HETAK1.240e-2896.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:5660136..5660531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size397
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.2727845-CDS-H-akashiwo_Contig8:5660135..56605311681387982.2727845-CDS-H-akashiwo_Contig8:5660135..5660531Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 5660136..5660531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.123.1prot_H-akashiwo_Contig8.123.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 5660136..5660531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.123.1

>prot_H-akashiwo_Contig8.123.1 ID=prot_H-akashiwo_Contig8.123.1|Name=mRNA_H-akashiwo_Contig8.123.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=132bp
AGAPGRAPGPGLPAAEARAHRPRAAGAQDRPPLTANLEERSGAFLEISRN
VPFRSPKARRCGPGAQPRRGRGGEKAPSAVSVRALLGGGRRGPDAGFSVW
GVLPGEQGSVWDGPRPLSCRRGRGNPAGLTGR
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mRNA from alignment at H-akashiwo_Contig8:5660136..5660531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.123.1 ID=mRNA_H-akashiwo_Contig8.123.1|Name=mRNA_H-akashiwo_Contig8.123.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig8:5660136..5660531+ (Heterosigma akashiwo CCMP452)
GCCGGCGCACCCGGGCGCGCTCCAGGCCCTGGCCTACCTGCTGCTGAGGC
AAGGGCGCACCGACCGCGCGCTGCAGGTGCTCAAGACCGGCCGCCTCTGA
CGGCCAACCTGGAGGAACGGTCCGGAGCGTTCCTGGAAATTTCCAGGAAC
GTTCCTTTCCGTTCCCCAAAGGCCCGCCGCTGCGGACCCGGCGCCCAGCC
CCGCCGCGGCCGCGGGGGGGAAAAAGCGCCGTCGGCGGTGTCGGTCCGCG
CTCTTCTCGGCGGAGGACGGCGGGGCCCGGACGCGGGGTTTTCTGTTTGG
GGCGTCCTCCCCGGGGAGCAGGGCTCCGTTTGGGACGGTCCCCGCCCGCT
CAGTTGCCGACGAGGACGGGGGAACCCGGCGGGCCTGACGGGGCGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:5660136..5660531+

>mRNA_H-akashiwo_Contig8.123.1 ID=mRNA_H-akashiwo_Contig8.123.1|Name=mRNA_H-akashiwo_Contig8.123.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=396bp|location=Sequence derived from alignment at H-akashiwo_Contig8:5660136..5660531+ (Heterosigma akashiwo CCMP452)
GCCGGCGCACCCGGGCGCGCTCCAGGCCCTGGCCTACCTGCTGCTGAGGC
AAGGGCGCACCGACCGCGCGCTGCAGGTGCTCAAGACCGGCCGCCTCTGA
CGGCCAACCTGGAGGAACGGTCCGGAGCGTTCCTGGAAATTTCCAGGAAC
GTTCCTTTCCGTTCCCCAAAGGCCCGCCGCTGCGGACCCGGCGCCCAGCC
CCGCCGCGGCCGCGGGGGGGAAAAAGCGCCGTCGGCGGTGTCGGTCCGCG
CTCTTCTCGGCGGAGGACGGCGGGGCCCGGACGCGGGGTTTTCTGTTTGG
GGCGTCCTCCCCGGGGAGCAGGGCTCCGTTTGGGACGGTCCCCGCCCGCT
CAGTTGCCGACGAGGACGGGGGAACCCGGCGGGCCTGACGGGGCGC
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