mRNA_H-akashiwo_Contig8.31.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig8.31.1
Unique NamemRNA_H-akashiwo_Contig8.31.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig8.31.1 vs. uniprot
Match: A0A7S3Y8E0_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8E0_HETAK)

HSP 1 Score: 273 bits (698), Expect = 2.270e-88
Identity = 141/143 (98.60%), Postives = 142/143 (99.30%), Query Frame = 1 
Query:   64 EQKVPAKKKKDAGPKSSGKKRQWKPRITPLPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSAHQGAWPAAVGHDQKEMAEAEHTSQEQPECKGAGHQRPRTPPTELVMAEPADHDEEPEVPPGRTAAPPE 492
            +QKVPAKKKKDAGPKSSGKKRQWKPRITPLPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSAHQGA PAAVGHDQKEMAEAEHTSQEQPECKGAGHQRPRTPPTELVMAEPADHDEEPEVPPGRTAAPPE
Sbjct:  186 QQKVPAKKKKDAGPKSSGKKRQWKPRITPLPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSAHQGAGPAAVGHDQKEMAEAEHTSQEQPECKGAGHQRPRTPPTELVMAEPADHDEEPEVPPGRTAAPPE 328
[Close]
BLAST of mRNA_H-akashiwo_Contig8.31.1 vs. uniprot
Match: A0A7S3Y8K0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y8K0_HETAK)

HSP 1 Score: 166 bits (420), Expect = 5.250e-48
Identity = 93/110 (84.55%), Postives = 95/110 (86.36%), Query Frame = 1 
Query:   64 EQKVPAKKKKDAGPKSSGKKRQWKPRITPLPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSA---HQGAWPAA---VGHDQKEMAEAEHTSQEQPEC 375
            +QKVPAKKKKDAGPKSSG KRQWKPRI PLPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSA   HQG  PAA   V H+QK MAEAE TSQE  EC
Sbjct:  186 QQKVPAKKKKDAGPKSSGTKRQWKPRIAPLPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSAQSAHQGVGPAAAETVDHNQKGMAEAERTSQEHLEC 295
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig8.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3Y8E0_HETAK2.270e-8898.60Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y8K0_HETAK5.250e-4884.55Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig8contigH-akashiwo_Contig8:1598953..1599445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size495
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-06_000780.1
Cds size492
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387982.0266562-CDS-H-akashiwo_Contig8:1598952..15994441681387982.0266562-CDS-H-akashiwo_Contig8:1598952..1599444Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig8 1598953..1599444 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig8.31.1prot_H-akashiwo_Contig8.31.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig8 1598953..1599444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig8.31.1

>prot_H-akashiwo_Contig8.31.1 ID=prot_H-akashiwo_Contig8.31.1|Name=mRNA_H-akashiwo_Contig8.31.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=164bp
SGSFVVGDGQRIDVDQCCYQYEQKVPAKKKKDAGPKSSGKKRQWKPRITP
LPEHAAMGGNTAKERPLGTGPTPTQGGECGGNSGEQAGATGNKQSAHQGA
WPAAVGHDQKEMAEAEHTSQEQPECKGAGHQRPRTPPTELVMAEPADHDE
EPEVPPGRTAAPPE
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mRNA from alignment at H-akashiwo_Contig8:1598953..1599445+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig8.31.1 ID=mRNA_H-akashiwo_Contig8.31.1|Name=mRNA_H-akashiwo_Contig8.31.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=493bp|location=Sequence derived from alignment at H-akashiwo_Contig8:1598953..1599445+ (Heterosigma akashiwo CCMP452)
TCAGGGAGCTTCGTCGTCGGCGACGGTCAAAGGATCGACGTCGACCAATG
CTGCTACCAATATGAGCAGAAAGTGCCCGCCAAGAAGAAGAAGGATGCCG
GTCCAAAGTCATCTGGCAAGAAGCGACAATGGAAGCCGCGCATTACACCA
CTGCCTGAGCACGCAGCCATGGGGGGCAACACAGCCAAGGAGCGTCCACT
GGGGACAGGGCCCACGCCTACTCAGGGGGGTGAGTGTGGTGGTAATAGTG
GTGAGCAGGCGGGTGCCACTGGGAATAAGCAGAGCGCACACCAGGGGGCG
TGGCCGGCGGCGGTCGGCCACGACCAGAAAGAAATGGCGGAGGCGGAGCA
CACCAGCCAGGAACAGCCAGAGTGTAAGGGGGCCGGGCACCAGCGTCCTC
GGACGCCGCCTACAGAGCTGGTGATGGCCGAGCCTGCCGACCATGATGAG
GAGCCGGAGGTGCCGCCCGGAAGGACGGCCGCACCACCGGAGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig8:1598953..1599445+

>mRNA_H-akashiwo_Contig8.31.1 ID=mRNA_H-akashiwo_Contig8.31.1|Name=mRNA_H-akashiwo_Contig8.31.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=492bp|location=Sequence derived from alignment at H-akashiwo_Contig8:1598953..1599445+ (Heterosigma akashiwo CCMP452)
TCAGGGAGCTTCGTCGTCGGCGACGGTCAAAGGATCGACGTCGACCAATG
CTGCTACCAATATGAGCAGAAAGTGCCCGCCAAGAAGAAGAAGGATGCCG
GTCCAAAGTCATCTGGCAAGAAGCGACAATGGAAGCCGCGCATTACACCA
CTGCCTGAGCACGCAGCCATGGGGGGCAACACAGCCAAGGAGCGTCCACT
GGGGACAGGGCCCACGCCTACTCAGGGGGGTGAGTGTGGTGGTAATAGTG
GTGAGCAGGCGGGTGCCACTGGGAATAAGCAGAGCGCACACCAGGGGGCG
TGGCCGGCGGCGGTCGGCCACGACCAGAAAGAAATGGCGGAGGCGGAGCA
CACCAGCCAGGAACAGCCAGAGTGTAAGGGGGCCGGGCACCAGCGTCCTC
GGACGCCGCCTACAGAGCTGGTGATGGCCGAGCCTGCCGACCATGATGAG
GAGCCGGAGGTGCCGCCCGGAAGGACGGCCGCACCACCGGAG
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