mRNA_H-akashiwo_Contig1210.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1210.8.1
Unique NamemRNA_H-akashiwo_Contig1210.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1210.8.1 vs. uniprot
Match: A0A7S4DK95_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DK95_HETAK)

HSP 1 Score: 123 bits (308), Expect = 1.360e-34
Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    4 QDHNASYEASGLRAVVDAIIPDFKAKVKQDGQALGREQYLFLKETSLNIIRFKKYKDSTMK 186
            +DHNASYEASGLRAVVDAIIPDFKAKVKQDGQALGREQYLFLKETSLNIIRFKKYKDSTMK
Sbjct:   74 EDHNASYEASGLRAVVDAIIPDFKAKVKQDGQALGREQYLFLKETSLNIIRFKKYKDSTMK 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1210.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DK95_HETAK1.360e-3498.36Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1210contigH-akashiwo_Contig1210:235426..236210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FH07
Preferred nameHEATR3
PFAMsArm,HEAT_EZ
Model size221
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0017038,GO:0022613,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0042254,GO:0042273,GO:0042886,GO:0044085,GO:0045184,GO:0046907,GO:0051082,GO:0051169,GO:0051170,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594
Exons2
Evalue7.67e-09
EggNOG OGs28Q2J@1|root,2QWR9@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-26_003020.1
Descriptionprotein import into nucleus
Cds size189
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387122.3416958-CDS-H-akashiwo_Contig1210:235425..2355061681387122.3416958-CDS-H-akashiwo_Contig1210:235425..235506Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1210 235426..235506 +
1681387122.3544014-CDS-H-akashiwo_Contig1210:236070..2361781681387122.3544014-CDS-H-akashiwo_Contig1210:236070..236178Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1210 236071..236178 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387122.3649504-UTR-H-akashiwo_Contig1210:236178..2362101681387122.3649504-UTR-H-akashiwo_Contig1210:236178..236210Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1210 236179..236210 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1210.8.1prot_H-akashiwo_Contig1210.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1210 235426..236178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1210.8.1

>prot_H-akashiwo_Contig1210.8.1 ID=prot_H-akashiwo_Contig1210.8.1|Name=mRNA_H-akashiwo_Contig1210.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=63bp
MQDHNASYEASGLRAVVDAIIPDFKAKVKQDGQALGREQYLFLKETSLNI
IRFKKYKDSTMK*
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mRNA from alignment at H-akashiwo_Contig1210:235426..236210+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1210.8.1 ID=mRNA_H-akashiwo_Contig1210.8.1|Name=mRNA_H-akashiwo_Contig1210.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=785bp|location=Sequence derived from alignment at H-akashiwo_Contig1210:235426..236210+ (Heterosigma akashiwo CCMP452)
ATGCAGGATCATAATGCCTCTTATGAGGCATCTGGACTTCGAGCAGTGGT
AGATGCAATTATTCCTGACTTCAAGGCAAAGGTGAGTGGAGGAGTGGTGG
TAGCAAGGAAACATCTTTTTCTCTAGCCTTTAAGTCCTTGATGGTGGTCC
TAGAAGCATTAGACTGGGATGATATGTTTTTTTGCCCAAAGCCCTACTAC
TGGTGGTCTTATAAATGATTCTTTTTAGCCTTCATTGTTGTTTGTTGGGA
AAACCAATATACACGTATACCATCATTGTGAGGACACCAAATTAGCATAT
ATGAGTTATTCTTTTTCCTTCTTTCCTCTACAAACAAATATATATAATGT
AAAAACAAAGTCAACATCAAGGGAACATCATCATGCCGTTTCAAAGTGTT
CTATGTTGTCCTAACTGCTGCTGTTGACAACAAATGAGCAAAAATAACAA
AAGTTTTTTTTTTTTAGATATGTAATAGAAGCTATGGGACACTACTGACG
ATGGCCCGAAACAGCTGCCTGCTCTCCGCTTCATAAGTAATCAAAAATTA
AAAAGCAAAAAACATATGCTTCAAGAACTTCCAGAAACAACCATCTTCAT
ATTTCATGTCTCTAAAAATATATGATGAACAATAACCACAACTAGGTGAA
GCAAGATGGGCAGGCTCTTGGCCGTGAGCAATACCTATTTTTGAAGGAAA
CAAGCTTAAACATAATCAGGTTCAAGAAATACAAGGATTCGACGATGAAG
TAGATGGGAAACCCTACCATCTAAGTGCTTTTCTT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1210:235426..236210+

>mRNA_H-akashiwo_Contig1210.8.1 ID=mRNA_H-akashiwo_Contig1210.8.1|Name=mRNA_H-akashiwo_Contig1210.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=189bp|location=Sequence derived from alignment at H-akashiwo_Contig1210:235426..236210+ (Heterosigma akashiwo CCMP452)
ATGCAGGATCATAATGCCTCTTATGAGGCATCTGGACTTCGAGCAGTGGT
AGATGCAATTATTCCTGACTTCAAGGCAAAGGTGAAGCAAGATGGGCAGG
CTCTTGGCCGTGAGCAATACCTATTTTTGAAGGAAACAAGCTTAAACATA
ATCAGGTTCAAGAAATACAAGGATTCGACGATGAAGTAG
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