mRNA_H-akashiwo_Contig796.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig796.3.1
Unique NamemRNA_H-akashiwo_Contig796.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig796.3.1 vs. uniprot
Match: A0A7S3XPY6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPY6_HETAK)

HSP 1 Score: 110 bits (276), Expect = 5.130e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 2 
Query:    2 REMRRADLQHVLTQPQFAHIRKQLRKHAVKLRFQTVGAQVIRKLASSRNLNATAALTAAAAAE 190
            REMRRADLQHVLTQPQFAHIRKQLRKHAVKLRFQTVGAQVIRKLASSRNLNATAALTAAAAAE
Sbjct:  334 REMRRADLQHVLTQPQFAHIRKQLRKHAVKLRFQTVGAQVIRKLASSRNLNATAALTAAAAAE 396
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig796.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XPY6_HETAK5.130e-27100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig796contigH-akashiwo_Contig796:105515..106649 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons2
Cds size192
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387979.051438-CDS-H-akashiwo_Contig796:105514..1055841681387979.051438-CDS-H-akashiwo_Contig796:105514..105584Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig796 105515..105584 +
1681387979.0653267-CDS-H-akashiwo_Contig796:106525..1066471681387979.0653267-CDS-H-akashiwo_Contig796:106525..106647Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig796 106526..106647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig796.3.1prot_H-akashiwo_Contig796.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig796 105515..106647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig796.3.1

>prot_H-akashiwo_Contig796.3.1 ID=prot_H-akashiwo_Contig796.3.1|Name=mRNA_H-akashiwo_Contig796.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=64bp
ARDAPGGPSARAYAAPVRPHPEAAAEARGQAPVPDRGRAGHQEAGQLAEP
ERDGRPHRRRRRRG
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mRNA from alignment at H-akashiwo_Contig796:105515..106649+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig796.3.1 ID=mRNA_H-akashiwo_Contig796.3.1|Name=mRNA_H-akashiwo_Contig796.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-akashiwo_Contig796:105515..106649+ (Heterosigma akashiwo CCMP452)
GCGCGAGATgCGcCGGGCGGACCTTCAGcaCGTGCTTACGCAGCCCCAGT
TCGCCCACATCCGGAAGCAGGTGGCGCCGCCCGCCCCGCCGGGCCCTCCC
TGCTGCCGGGCGCCCCCCccccctCCCCCCCTTCTGATCGACGGGGCTCC
TCGGACGGACGTCGGGTGCACTAACAAGGTTCCTGGGTGGTGGTCCGACC
AGCAGTCTGTATGACCTCCCGTCCGTGCTTCATAACGCAGCCGGCTAGCA
CCAGTCATCATGGTGGAAGCAACGAGAGTAGTGGTAGGAAGCAATAGTCT
GGGCTCAATCCAAAACCGTTATTCCGCCTATCTGTGCGCCTACCTTGCCA
AGATCCCACCCCCTGCAACAAGCCCTTGGTCGGCAAAATCAAAATCCCAT
TTCTATTATTCCGCCTATCTGTGCGCCTACCTTGCCAAGATCCCACCCCC
TGCAACAAGCCCTTGGTCGGCAAAATCAAAATCCCATTTCTGCAAAGGTA
GTCTTCACGTGCACCAATCTCGATGAAACTGGTACCATTTAAACCCTCTT
TTCAAAAAAATAAAAGTGCCGCCAAAGTCTCGCTTGGCATCCAATGTTTA
TTCTTTGAGTTTCATTCCAATCCATTGTGAACCACTGATTTGAGGTTTCT
GAACTTTTATCATCAATTTACCAATTGAAAGTCAACCCTTTTGCCACAAA
TAGAAATCCCCCCTGTTGTAGAAGTGGCTCAACTGGTAGTCAACAACTGT
ATATCGGGGAATGTTATGTTTTATAGTTCAACACTGAATCTCAACATGCT
GCTTTAAGACAGATTGCACCCAGAAAAAATACACACCACTCCCCAAAAAA
CCTCCAGTTGAGTTCAAGAGCAAATATCAGGCATGTGCCAACGTGCCCTC
CTCGTTACCCCCTTCCGACCACCTCCCTCCCCACCCTTCCCCACCCCCAC
CCCCAGCACACACACACCTCCACCCGGATCCCCCCATTGCCCCGGCCCGG
CCCCGCGGCAGCTGCGGAAGCACGCGGTCAAGCTCCGGTTCCAGACCGTG
GGCGCGCAGGTCATCAGGAAGCTGGCCAGCTCGCGGAACCTGAACGCGAC
GGCCGCCCTCACCGCCGCCGCCGCCGCCGAGGAGG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig796:105515..106649+

>mRNA_H-akashiwo_Contig796.3.1 ID=mRNA_H-akashiwo_Contig796.3.1|Name=mRNA_H-akashiwo_Contig796.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=192bp|location=Sequence derived from alignment at H-akashiwo_Contig796:105515..106649+ (Heterosigma akashiwo CCMP452)
GCGCGAGATgCGcCGGGCGGACCTTCAGcaCGTGCTTACGCAGCCCCAGT
TCGCCCACATCCGGAAGCAGCTGCGGAAGCACGCGGTCAAGCTCCGGTTC
CAGACCGTGGGCGCGCAGGTCATCAGGAAGCTGGCCAGCTCGCGGAACCT
GAACGCGACGGCCGCCCTCACCGCCGCCGCCGCCGCCGAGGA
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