mRNA_H-akashiwo_Contig1209.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1209.6.1
Unique NamemRNA_H-akashiwo_Contig1209.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: A0A6G0XGX1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGX1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 8.290e-6
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 3 
Query:    6 TEWAMDWAAEDGHLDVLEWLHANRSEGC 89
            T WAMDWAA +GH DVLE+LH +RSEGC
Sbjct:  132 TTWAMDWAAANGHFDVLEFLHLHRSEGC 159
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: A0A7S3XVV3_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XVV3_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 3.440e-5
Identity = 21/29 (72.41%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:    3 CTEWAMDWAAEDGHLDVLEWLHANRSEGC 89
            CT  AMD AA  GHL V+EWLHANR+EGC
Sbjct:   19 CTRDAMDKAARRGHLAVVEWLHANRTEGC 47
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: K3WP08_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP08_GLOUD)

HSP 1 Score: 48.5 bits (114), Expect = 4.030e-5
Identity = 16/24 (66.67%), Postives = 22/24 (91.67%), Query Frame = 3 
Query:   18 MDWAAEDGHLDVLEWLHANRSEGC 89
            MDWAA +GHLD+++WLH +R+EGC
Sbjct:    1 MDWAAREGHLDIVQWLHEHRTEGC 24
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: A0A146JDN6_9VIRU (Conserved ankyrin repeat-containing protein n=1 Tax=Tokyovirus A1 TaxID=1826170 RepID=A0A146JDN6_9VIRU)

HSP 1 Score: 50.4 bits (119), Expect = 5.130e-5
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 3 
Query:    3 CTEWAMDWAAEDGHLDVLEWLHANRSEGC 89
            C++ AMDWAA +GHL V+E+LH NRSEGC
Sbjct:   28 CSKKAMDWAAMEGHLPVVEFLHKNRSEGC 56
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: D0N874_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N874_PHYIT)

HSP 1 Score: 50.4 bits (119), Expect = 5.330e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:    3 CTEWAMDWAAEDGHLDVLEWLHANRSEGC 89
            C  + MD AAE GHL V++WLHANRSEGC
Sbjct:   89 CGRFLMDTAAEHGHLSVMQWLHANRSEGC 117
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: G4Z4B2_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z4B2_PHYSP)

HSP 1 Score: 47.8 bits (112), Expect = 6.220e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:    3 CTEWAMDWAAEDGHLDVLEWLHANRSEGC 89
            C   AMD AA +GHLDV++WLHA RSEGC
Sbjct:    1 CDTTAMDVAAANGHLDVVKWLHAARSEGC 29
[Close]
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Match: G4YUP7_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YUP7_PHYSP)

HSP 1 Score: 50.1 bits (118), Expect = 6.970e-5
Identity = 20/29 (68.97%), Postives = 23/29 (79.31%), Query Frame = 3 
Query:    3 CTEWAMDWAAEDGHLDVLEWLHANRSEGC 89
            C  + MD AAE GHL V++WLHANRSEGC
Sbjct:   89 CGRFLMDTAAEHGHLPVMQWLHANRSEGC 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1209.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6G0XGX1_9STRA8.290e-675.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S3XVV3_HETAK3.440e-572.41Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
K3WP08_GLOUD4.030e-566.67Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A146JDN6_9VIRU5.130e-568.97Conserved ankyrin repeat-containing protein n=1 Ta... [more]
D0N874_PHYIT5.330e-568.97Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
G4Z4B2_PHYSP6.220e-568.97Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
G4YUP7_PHYSP6.970e-568.97Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1209contigH-akashiwo_Contig1209:241923..242287 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog4787.PITG_06824T0
PFAMsAnk_4
Model size366
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.84e-07
EggNOG OGs2CRY7@1|root,2R9KB@2759|Eukaryota,3Q80D@4776|Peronosporales
DescriptionAnkyrin repeats (many copies)
Cds size348
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387120.990897-UTR-H-akashiwo_Contig1209:241922..2419391681387120.990897-UTR-H-akashiwo_Contig1209:241922..241939Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1209 241923..241939 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387121.0019636-CDS-H-akashiwo_Contig1209:241939..2422871681387121.0019636-CDS-H-akashiwo_Contig1209:241939..242287Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1209 241940..242287 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1209.6.1prot_H-akashiwo_Contig1209.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1209 241940..242287 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1209.6.1

>prot_H-akashiwo_Contig1209.6.1 ID=prot_H-akashiwo_Contig1209.6.1|Name=mRNA_H-akashiwo_Contig1209.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=116bp
MDWAAEDGHLDVLEWLHANRSEGCTREAMNLAAKNGHLSVVEWLHANRVA
HCDKEAMDLAATNGHLAVLEWLHANSTVGCTKEAMNRAAMNGHLCIMEWL
HVNRLEGCTKDAMDFA
back to top

mRNA from alignment at H-akashiwo_Contig1209:241923..242287+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1209.6.1 ID=mRNA_H-akashiwo_Contig1209.6.1|Name=mRNA_H-akashiwo_Contig1209.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=365bp|location=Sequence derived from alignment at H-akashiwo_Contig1209:241923..242287+ (Heterosigma akashiwo CCMP452)
GCTGTACCGAATGGGCCATGGACTGGGCAGCTGAGGACGGTCATCTCGAT
GTCTTGGAATGGCTGCATGCAAACCGTTCAGAGGGCTGCACCAGAGAGGC
AATGAATTTGGCAGCCAAGAATGGCCATCTCTCAGTGGTGGAATGGCTGC
ATGCAAACCGTGTGGCCCACTGCGACAAAGAGGCCATGGATTTGGCAGCA
ACGAATGGCCACCTGGCTGTGTTGGAGTGGCTGCATGCTAACAGCACTGT
GGGTTGCACCAAAGAGGCCATGAATAGGGCAGCTATGAATGGCCACCTCT
GTATCATGGAGTGGCTGCATGTGAACCGTTTAGAGGGCTGCACTAAAGAT
GCAATGGACTTTGCG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig1209:241923..242287+

>mRNA_H-akashiwo_Contig1209.6.1 ID=mRNA_H-akashiwo_Contig1209.6.1|Name=mRNA_H-akashiwo_Contig1209.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=348bp|location=Sequence derived from alignment at H-akashiwo_Contig1209:241923..242287+ (Heterosigma akashiwo CCMP452)
ATGGACTGGGCAGCTGAGGACGGTCATCTCGATGTCTTGGAATGGCTGCA
TGCAAACCGTTCAGAGGGCTGCACCAGAGAGGCAATGAATTTGGCAGCCA
AGAATGGCCATCTCTCAGTGGTGGAATGGCTGCATGCAAACCGTGTGGCC
CACTGCGACAAAGAGGCCATGGATTTGGCAGCAACGAATGGCCACCTGGC
TGTGTTGGAGTGGCTGCATGCTAACAGCACTGTGGGTTGCACCAAAGAGG
CCATGAATAGGGCAGCTATGAATGGCCACCTCTGTATCATGGAGTGGCTG
CATGTGAACCGTTTAGAGGGCTGCACTAAAGATGCAATGGACTTTGCG
back to top