mRNA_H-akashiwo_Contig12.36.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig12.36.1
Unique NamemRNA_H-akashiwo_Contig12.36.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig12.36.1 vs. uniprot
Match: A0A7S3XZ75_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ75_HETAK)

HSP 1 Score: 67.8 bits (164), Expect = 3.290e-11
Identity = 29/80 (36.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:   49 WIQALSSASYSVALDEFHPIARIGAGQWGSVFVASRQL---EDSREIVAVKEVQVHDHTNLNHVIQERCILAALPKHPFI 279
            W  A  +A++S+ + +F P+A++G G+WG+VFVA ++    +   ++ AVKE+++   +N+ H+I ER +L A+  HPF+
Sbjct:  198 WCAAARAAAFSLTVGDFTPLAKVGEGEWGNVFVAGKRAALRQADPKLYAVKEIEMSRSSNVKHIIHERNVLGAVSLHPFV 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S3XZ75_HETAK3.290e-1136.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:1361859..1362255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G915
PFAMsPkinase
Model size281
Max annot lvl2759|Eukaryota
KEGG koko:K13303
KEGG Pathwayko04068,ko04151,map04068,map04151
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.22e-10
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size279
COG categoryH
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387116.7792006-CDS-H-akashiwo_Contig12:1361860..13620151681387116.7792006-CDS-H-akashiwo_Contig12:1361860..1362015Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1361861..1362015 -
1681387116.7912652-CDS-H-akashiwo_Contig12:1362131..13622551681387116.7912652-CDS-H-akashiwo_Contig12:1362131..1362255Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig12 1362132..1362255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.36.1prot_H-akashiwo_Contig12.36.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig12 1361861..1362255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig12.36.1

>prot_H-akashiwo_Contig12.36.1 ID=prot_H-akashiwo_Contig12.36.1|Name=mRNA_H-akashiwo_Contig12.36.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=93bp
VATVFLAAPTKSSTLSWIQALSSASYSVALDEFHPIARIGAGQWGSVFVA
SRQLEDSREIVAVKEVQVHDHTNLNHVIQERCILAALPKHPFI
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mRNA from alignment at H-akashiwo_Contig12:1361859..1362255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig12.36.1 ID=mRNA_H-akashiwo_Contig12.36.1|Name=mRNA_H-akashiwo_Contig12.36.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=397bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1361859..1362255- (Heterosigma akashiwo CCMP452)
GTAGCCACGGTTTTCTTGGCGGCTCCCACCAAAAGCTCAACACTTTCTTG
GATTCAGGCTCTCAGTTCTGCATCCTACTCCGTGGCTCTTGATGAATTTC
ACCCAATTGCCAGAATCGGTGCAGGTTTGTTCCCCCCCCCAGCCTGCAAA
ACTGTAAAACAATACAGAATGATGTGTTTTTTCAATGTTGAAACCTATCT
CCAATAAGACTGATATTTGGATTAACTTCGGATATATCAGGTCAGTGGGG
AAGTGTTTTTGTGGCATCAAGGCAGCTGGAAGACAGTAGAGAGATCGTAG
CTGTCAAAGAAGTTCAGGTCCATGATCACACCAACCTCAATCACGTGATT
CAAGAGCGGTGCATTCTAGCTGCACTGCCCAAGCACCCCTTCATTGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig12:1361859..1362255-

>mRNA_H-akashiwo_Contig12.36.1 ID=mRNA_H-akashiwo_Contig12.36.1|Name=mRNA_H-akashiwo_Contig12.36.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=279bp|location=Sequence derived from alignment at H-akashiwo_Contig12:1361859..1362255- (Heterosigma akashiwo CCMP452)
GTAGCCACGGTTTTCTTGGCGGCTCCCACCAAAAGCTCAACACTTTCTTG
GATTCAGGCTCTCAGTTCTGCATCCTACTCCGTGGCTCTTGATGAATTTC
ACCCAATTGCCAGAATCGGTGCAGGTCAGTGGGGAAGTGTTTTTGTGGCA
TCAAGGCAGCTGGAAGACAGTAGAGAGATCGTAGCTGTCAAAGAAGTTCA
GGTCCATGATCACACCAACCTCAATCACGTGATTCAAGAGCGGTGCATTC
TAGCTGCACTGCCCAAGCACCCCTTCATT
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