mRNA_H-akashiwo_Contig1.216.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1.216.1
Unique NamemRNA_H-akashiwo_Contig1.216.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A6S9JR17_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9JR17_HETAK)

HSP 1 Score: 494 bits (1271), Expect = 4.040e-165
Identity = 288/298 (96.64%), Postives = 290/298 (97.32%), Query Frame = 1 
Query:  193 ERKKLVKEEKAKLFYGYTNDENPWGDPNLTKQFVWRRKHAKEEPSGNASKTSLVEKRRKTMEEVXXXXXXXXXXXXXXXXXXXLKAEESRLREVQQFGDWQKKEEDFHRYQAKIRSKIRLIEDRAKPIDLLAKNLLLFSGEEXXXEELDGGRCKYKGGTNLSIDHLEVELREPYLIFQDLTVAELRTLQGDIQTYQELQGKEEGSLPARFWGALAAICADELKHATHRAGTEAKAAALGGGGGAAGRDNIKGGMHEAVRGEVEALFGGRSAVYLTKMAGSWKLAAEGHGAGAYGAGGA 1086
            ERKKLVKEEKAKLFYGYTNDENPWGDPNLTKQFVWRRKHAKEEPSGNASKTSLVEKRRKTMEEVXXXXXXXXXXXXXXXXXXXLKAEESRLREVQQFGDWQKKEEDFHRYQAKIRSKIRLIEDRAKPIDLLAKNLLLFSGEEXXXEELDGGRCKYKGGTNLSIDHLEVELREPYLIFQDLTVAELRTLQGDIQTYQELQGKEEGSLPARFWGALAAICADELKHATHRAGTEAKAAALGGGGGAAGRDNIKGGMHEAVRGEVEALFGGRSAVYLTKMAG  +LAA+   A A G GGA
Sbjct:   80 ERKKLVKEEKAKLFYGYTNDENPWGDPNLTKQFVWRRKHAKEEPSGNASKTSLVEKRRKTMEEVXXXXXXXXXXXXXXXXXXXLKAEESRLREVQQFGDWQKKEEDFHRYQAKIRSKIRLIEDRAKPIDLLAKNLLLFSGEEXXXEELDGGRCKYKGGTNLSIDHLEVELREPYLIFQDLTVAELRTLQGDIQTYQELQGKEEGSLPARFWGALAAICADELKHATHRAGTEAKAAALGGGGGAAGRDNIKGGMHEAVRGEVEALFGGRSAVYLTKMAG--QLAAKAEAARAGGDGGA 375
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A7S2FHW7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FHW7_9STRA)

HSP 1 Score: 265 bits (678), Expect = 3.740e-81
Identity = 119/163 (73.01%), Postives = 139/163 (85.28%), Query Frame = 3 
Query: 1308 DESAEAVAMERAEKAKGMDDLEEALGLQDEVKL-DSVYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            D SA AV MERAE AKGM+DLEE +GL DEV   D VYWW DKYRPRKPRYFNRVKTGY+WNKYNQ HYDH+NPPPKTVQGYKFN+FYPDLID++ TP++ LEPA+  +FC++RF+AGPPYED+AFKI+NR W + RKRGF C FERGIL L+ NF+RH YR+
Sbjct:  103 DGSAAAVDMERAEAAKGMEDLEEEMGLADEVGTKDQVYWWQDKYRPRKPRYFNRVKTGYEWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLIDRTNTPRYILEPADTKEFCILRFSAGPPYEDIAFKIINREWEFGRKRGFKCVFERGILHLYFNFKRHRYRK 265
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A7S2BDL4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BDL4_9STRA)

HSP 1 Score: 265 bits (678), Expect = 7.540e-78
Identity = 119/163 (73.01%), Postives = 139/163 (85.28%), Query Frame = 3 
Query: 1308 DESAEAVAMERAEKAKGMDDLEEALGLQDEVKL-DSVYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            D SA AV MERAE AKGM+DLEE +GL DEV   D VYWW DKYRPRKPRYFNRVKTGY+WNKYNQ HYDH+NPPPKTVQGYKFN+FYPDLID++ TP++ LEPA+  +FC++RF+AGPPYED+AFKI+NR W + RKRGF C FERGIL L+ NF+RH YR+
Sbjct:  361 DGSAAAVDMERAEAAKGMEDLEEEMGLADEVGTKDQVYWWQDKYRPRKPRYFNRVKTGYEWNKYNQTHYDHDNPPPKTVQGYKFNVFYPDLIDRTNTPRYILEPADTKEFCILRFSAGPPYEDIAFKIINREWEFGRKRGFKCVFERGILHLYFNFKRHRYRK 523
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A835YNE1_9STRA (Cactus-binding C-terminus of cactin protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNE1_9STRA)

HSP 1 Score: 258 bits (660), Expect = 3.400e-74
Identity = 115/163 (70.55%), Postives = 138/163 (84.66%), Query Frame = 3 
Query: 1308 DESAEAVAMERAEKAKGMDDLEEALGLQDEVKLD-SVYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            D S  A+A+E AE+ KG++DLE+A+GL DEV    + YWW+DKYRPRKPRYFNRVKTGYDWNKYNQ+HYDH+NPPPKTVQGYKFN+FYPDL+D+S TP+F LEP++     +IRFTAGPPYED+AFKIVNR W Y RKRGF C FERG+L+LF NF+RH YR+
Sbjct:  460 DASDAALALEVAERGKGLEDLEDAMGLGDEVDTSGTTYWWNDKYRPRKPRYFNRVKTGYDWNKYNQSHYDHDNPPPKTVQGYKFNVFYPDLLDRSVTPQFKLEPSDHPDMAIIRFTAGPPYEDIAFKIVNREWEYARKRGFRCVFERGVLSLFFNFKRHRYRK 622
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A7S4N022_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N022_9STRA)

HSP 1 Score: 234 bits (597), Expect = 8.360e-70
Identity = 102/143 (71.33%), Postives = 119/143 (83.22%), Query Frame = 3 
Query: 1368 LEEALGLQDEVKLDSV-YWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            LEE LGL  EV L S  Y W D+YRPRKPRYFNRVKTGYDWNKYNQ HYDH+NPPPKTVQGYKFNIFYPDLID++ TP++ LEPA+  +FC++RF AGPPYED+AFK++NR W   RKRGF C FERG+L+L+ NF  H+YRR
Sbjct:   78 LEEELGLGTEVDLGSASYAWQDRYRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNIFYPDLIDRTRTPQYVLEPADSPEFCIVRFKAGPPYEDIAFKVINREWNRSRKRGFRCTFERGVLSLYFNFASHWYRR 220
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: K3X2U2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X2U2_GLOUD)

HSP 1 Score: 243 bits (621), Expect = 2.390e-69
Identity = 109/162 (67.28%), Postives = 128/162 (79.01%), Query Frame = 3 
Query: 1308 DESAEAVAMERAEKAKGMDDLEEALGLQDEVKLDSVYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            DES EA+ MERAE  K ++D+EE +G+ +EV +D V  W +KY+PRKPRYFNRVKTGYDWNKYNQ HYDH+NPPPK VQGYKFN+FYPDLIDK   P+F LE      FC+IRF+AGPPY+D+AFKIVNR W Y  KRGF   FERGIL L+ NF+RH YRR
Sbjct:  380 DESREAMQMERAEAHKELEDMEEKMGMSEEVAIDDVPQWSEKYQPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKVVQGYKFNLFYPDLIDKHAAPRFFLEKTNSPDFCIIRFSAGPPYQDIAFKIVNREWEYSHKRGFKSVFERGILHLYFNFKRHRYRR 541
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A7S1VCE4_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VCE4_9STRA)

HSP 1 Score: 239 bits (611), Expect = 2.570e-69
Identity = 105/149 (70.47%), Postives = 123/149 (82.55%), Query Frame = 3 
Query: 1353 KGMDDLEEALGLQDEVKLDSV--YWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            +G  DLEE LGL DEV       Y W +++RPRKPRYFNRVKTGYDWNKYNQ HYDH+NPPPKTVQGYKFNIFYPDLIDK++TP+F LEPA+ D FC++RF AGPPYED+AFKI+NR W   RKRGF C FERG+L+L+ NF+ H+YRR
Sbjct:  265 EGFGDLEEELGLTDEVTASGSGSYSWEERFRPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKTVQGYKFNIFYPDLIDKTKTPQFVLEPADSDDFCILRFKAGPPYEDIAFKIINREWNRSRKRGFRCSFERGVLSLYFNFKTHWYRR 413
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A7S2KTJ2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTJ2_9STRA)

HSP 1 Score: 241 bits (614), Expect = 2.760e-69
Identity = 106/143 (74.13%), Postives = 123/143 (86.01%), Query Frame = 3 
Query: 1368 LEEALGLQDEVKLDS-VYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            L+EALGL DEV L S  Y W +KYRPRKPRYFNRV+TGYDWNKYNQ HYDH+NPPPKTVQGYKFNIFYPDL+DKS+TP++ LEPA+ ++FC+IRF+AG PYEDVAFKI+NR W   RKRGF C FERG+L+LF NF  H+YRR
Sbjct:  311 LDEALGLSDEVDLGSGTYRWQEKYRPRKPRYFNRVRTGYDWNKYNQTHYDHDNPPPKTVQGYKFNIFYPDLVDKSKTPQYFLEPADSNEFCIIRFSAGAPYEDVAFKIINREWNKSRKRGFKCVFERGVLSLFFNFNTHWYRR 453
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A8K1CFB0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFB0_PYTOL)

HSP 1 Score: 241 bits (614), Expect = 4.020e-68
Identity = 113/171 (66.08%), Postives = 133/171 (77.78%), Query Frame = 3 
Query: 1284 DSDGSYVVDESAEAVAMERAEKAKGMDDLEEALGLQDEVKLDS-VYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            D D S + D+SAEA A+E  E  KG+++ EE LG  DEV L+  +  W DKY+PRKPRYFNRVKTGYDWNKYNQ HYDH+NPPPK VQGYKFN+FYPDLIDK+  P+F LE +   +FC+IRFTAGPPY+D+AFKIVNR W Y  KRGF   FERGIL L+ NF+RH YRR
Sbjct:  392 DRDPSDLRDDSAEARALEHQEAEKGLEESEEKLGTADEVALEGKLPSWSDKYQPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKVVQGYKFNLFYPDLIDKTAAPRFVLEKSNSSEFCIIRFTAGPPYQDIAFKIVNREWEYSHKRGFKSVFERGILHLYFNFKRHRYRR 562
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BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Match: A0A662X9C7_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X9C7_9STRA)

HSP 1 Score: 230 bits (587), Expect = 4.060e-68
Identity = 105/161 (65.22%), Postives = 124/161 (77.02%), Query Frame = 3 
Query: 1320 EAVAMERAEKAKGMDDLEEALGLQDEVKLD---SVYWWHDKYRPRKPRYFNRVKTGYDWNKYNQAHYDHENPPPKTVQGYKFNIFYPDLIDKSETPKFHLEPAEDDKFCLIRFTAGPPYEDVAFKIVNRAWAYQRKRGFLCKFERGILTLFVNFQRHFYRR 1793
            EA  MER+   KG+ + EE LG  +EV L    +   W DKY+PRKPRYFNRVKTGYDWNKYNQ HYDH+NPPPK VQGYKFN+FYPDLIDK  +P+F LE  + D+FC+IRF+AGPPY+D+AFK+VNR W Y  KRGF   FERGIL L+ NF+RH YRR
Sbjct:   75 EARDMERSFARKGLGEAEERLGASEEVALTESKATLRWSDKYQPRKPRYFNRVKTGYDWNKYNQTHYDHDNPPPKVVQGYKFNLFYPDLIDKHTSPRFFLEKTQSDEFCIIRFSAGPPYQDIAFKVVNREWEYSHKRGFKSVFERGILHLYFNFKRHRYRR 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1.216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S9JR17_HETAK4.040e-16596.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2FHW7_9STRA3.740e-8173.01Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2BDL4_9STRA7.540e-7873.01Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835YNE1_9STRA3.400e-7470.55Cactus-binding C-terminus of cactin protein-domain... [more]
A0A7S4N022_9STRA8.360e-7071.33Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
K3X2U2_GLOUD2.390e-6967.28Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1VCE4_9STRA2.570e-6970.47Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2KTJ2_9STRA2.760e-6974.13Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8K1CFB0_PYTOL4.020e-6866.08Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662X9C7_9STRA4.060e-6865.22Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1contigH-akashiwo_Contig1:9087633..9089510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKP9
Preferred nameCACTIN
PFAMsCactinC_cactus,Cactin_mid
Model size1839
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0000578,GO:0001654,GO:0001817,GO:0001818,GO:0001932,GO:0001933,GO:0001959,GO:0001960,GO:0002237,GO:0002682,GO:0002683,GO:0002831,GO:0002832,GO:0003002,GO:0003006,GO:0003407,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007346,GO:0007350,GO:0007351,GO:0007389,GO:0007423,GO:0007548,GO:0008150,GO:0008152,GO:0008380,GO:0008406,GO:0008595,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009791,GO:0009793,GO:0009798,GO:0009880,GO:0009889,GO:0009892,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010563,GO:0010564,GO:0010605,GO:0010646,GO:0010648,GO:0010971,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019220,GO:0019222,GO:0022414,GO:0022607,GO:0023051,GO:0023057,GO:0030111,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031326,GO:0031347,GO:0031348,GO:0031399,GO:0031400,GO:0031664,GO:0031665,GO:0031974,GO:0031981,GO:0032088,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032479,GO:0032480,GO:0032496,GO:0032501,GO:0032502,GO:0032648,GO:0032677,GO:0032680,GO:0032688,GO:0032717,GO:0032720,GO:0032879,GO:0032991,GO:0033993,GO:0034097,GO:0034121,GO:0034122,GO:0034612,GO:0034641,GO:0035282,GO:0040012,GO:0040017,GO:0040019,GO:0042221,GO:0042325,GO:0042326,GO:0043010,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043433,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045137,GO:0045595,GO:0045787,GO:0045824,GO:0045931,GO:0045936,GO:0045995,GO:0046483,GO:0048316,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051090,GO:0051094,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051259,GO:0051260,GO:0051270,GO:0051272,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0060041,GO:0060255,GO:0060338,GO:0060339,GO:0060759,GO:0060761,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070555,GO:0070887,GO:0071013,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071347,GO:0071356,GO:0071396,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901700,GO:1901701,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902494,GO:1902749,GO:1902751,GO:1903506,GO:1903555,GO:1903556,GO:1990904,GO:2000026,GO:2000112,GO:2000145,GO:2000147,GO:2001141
Exons2
Evalue3.74e-31
EggNOG OGsKOG2370@1|root,KOG2370@2759|Eukaryota
Descriptionnegative regulation of type I interferon-mediated signaling pathway
Cds size1029
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.6986754-UTR-H-akashiwo_Contig1:9087632..90878241681387038.6986754-UTR-H-akashiwo_Contig1:9087632..9087824Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9087633..9087824 +
1681387038.7121825-UTR-H-akashiwo_Contig1:9087863..90880431681387038.7121825-UTR-H-akashiwo_Contig1:9087863..9088043Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9087864..9088043 +
1681387038.729354-UTR-H-akashiwo_Contig1:9089072..90895101681387038.729354-UTR-H-akashiwo_Contig1:9089072..9089510Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1 9089073..9089510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387038.7211719-CDS-H-akashiwo_Contig1:9088043..90890721681387038.7211719-CDS-H-akashiwo_Contig1:9088043..9089072Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1 9088044..9089072 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1.216.1prot_H-akashiwo_Contig1.216.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1 9088044..9089072 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1.216.1

>prot_H-akashiwo_Contig1.216.1 ID=prot_H-akashiwo_Contig1.216.1|Name=mRNA_H-akashiwo_Contig1.216.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=343bp
MEEVEKVRRRRKEREEELEEMERLKAEESRLREVQQFGDWQKKEEDFHRY
QAKIRSKIRLIEDRAKPIDLLAKNLLLFSGEEEEEEELDGGRCKYKGGTN
LSIDHLEVELREPYLIFQDLTVAELRTLQGDIQTYQELQGKEEGSLPARF
WGALAAICADELKHATHRAGTEAKAAALGGGGGAAGRDNIKGGMHEAVRG
EVEALFGGRSAVYLTKMAGSWKLAAEGHGAGAYGAGGALRSTARAGAPGR
GTALEGRVARKVPAHAAGQLTGLEGAAKRVGSRSALKARAAGRPPRRRGT
TPARTATAATWWTRARRPWPWSGRRRPRAWTTWRRRWACRTR*
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mRNA from alignment at H-akashiwo_Contig1:9087633..9089510+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1.216.1 ID=mRNA_H-akashiwo_Contig1.216.1|Name=mRNA_H-akashiwo_Contig1.216.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1878bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9087633..9089510+ (Heterosigma akashiwo CCMP452)
AAAAGTAAGAAGAAAAGTAAGGACAGAAAAAGAGACAGATCTCCAAGTTC
TTCGTCGTCAAGGGCAAGCGACAGCGAAGAAGAAAGAAGACGGCAAAGAA
AGAAAGAGAAAAAAGAAAAGAAGATCGCCGAGAAAAAGGCCGCGAAACTT
GCTGCAAAGAAAGCTGCGAAGCTTGCTGCCAAGCAGGCAGCTGTCAGCGC
CGGGGGGGTGGGCGCTGGCCTCACTCATGAGGAAAGGAAAAAGCTTGTCA
AAGAAGAGAAAGCGAAGCTGTTTTATGGGTACACGAACGATGAGAATCCT
TGGGGCGACCCGAATTTAACCAAGCAGTTCGTCTGGCGCCGCAAGCACGC
AAAAGAGGAGCCTTCCGGCAATGCTAGCAAGACCTCGTTGGTCGAAAAGC
GCCGCAAAACAATGGAGGAGGTTGAGAAGGTACGACGCCGGCGGAAGGAG
CGCGAAGAGGAGCTGGAGGAAATGGAGAGGCTGAAGGCCGAGGAGAGTCG
GCTGCGCGAGGTACAGCAGTTTGGAGACTGGCAAAAGAAGGAGGAGGATT
TCCACCGGTACCAGGCGAAGATCCGCTCGAAGATCCGGCTGATCGAGGAC
CGCGCCAAGCCCATCGACCTGCTGGCCAAGAACCTGCTCCTCTTCTCTGG
GGAGGAGGAGGAGGAGGAAGAGCTGGACGGCGGCCGGTGCAAGTACAAGG
GCGGCACGAACCTGAGCATCGACCACCTGGAGGTGGAGCTGCGGGAGCCG
TACCTTATCTTCCAGGACCTGACCGTCGCGGAGCTGCGCACCCTGCAGGG
GGACATCCAGACCTACCAGGAGCTGCAGGGAAAGGAGGAGGGCTCGCTCC
CCGCGCGGTTCTGGGGCGCGCTGGCCGCCATCTGCGCGGACGAGCTGAAG
CACGCGACCCACCGCGCGGGCACCGAGGCCAAGGCGGCAGCGCTGGGCGG
CGGCGGCGGGGCGGCCGGCCGGGACAACATCAAGGGGGGCATGCACGAGG
CGGTCCGCGGGGAGGTGGAGGCGCTCTTCGGCGGGCGCTCGGCCGTGTAC
CTGACGAAGATGGCGGGCAGCTGGAAGCTGGCGGCGGAGGGGCACGGCGC
GGGCGCGTACGGGGCGGGCGGCGCACTTCGAAGTACTGCCCGTGCTGGAG
CACCTGGCCGCGGTACCGCGCTGGAAGGCCGCGTGGCGCGAAAGGTACCA
GCACATGCTGCAGGGCAGCTGACCGGGCTGGAGGGCGCGGCGAAGCGTGT
TGGGTCGAGGAGCGCGTTAAAGGCGCGCGCTGCCGGGAGGCCTCCGAGGA
GGAGGGGGACGACGCCGGCGCGGACAGCGACGGCAGCTACGTGGTGGACG
AGAGCGCGGAGGCCGTGGCCATGGAGCGGGCGGAGAAGGCCAAGGGCATG
GACGACCTGGAGGAGGCGCTGGGCCTGCAGGACGAGGTGAAGCTGGACAG
CGTGTACTGGTGGCACGACAAGTACCGCCCGCGCAAGCCGCGGTACTTCA
ACCGCGTGAAGACGGGCTACGACTGGAACAAGTACAACCAGGCGCACTAC
GACCACGAGAACCCGCCGCCCAAGACCGTGCAGGGGTACAAGTTCAACAT
CTTTTACCCGGACCTGATCGACAAGTCCGAGACGCCCAAGTTCCACCTGG
AGCCAGCCGAGGACGACAAGTTCTGCCTCATCCGCTTCACGGCGGGCCCG
CCCTACGAGGACGTGGCCTTCAAGATCGTCAACCGCGCGTGGGCCTACCA
GCGCAAGCGCGGCTTCCTGTGCAAGTTCGAGCGGGGCATCCTCACGCTCT
TCGTCAACTTCCAGCGGCACTTCTACCGCAGATAATGTAACCCAAGAGCG
GGGGCGGGCGAACAGCGGCGGCGGGGGC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1:9087633..9089510+

>mRNA_H-akashiwo_Contig1.216.1 ID=mRNA_H-akashiwo_Contig1.216.1|Name=mRNA_H-akashiwo_Contig1.216.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=1029bp|location=Sequence derived from alignment at H-akashiwo_Contig1:9087633..9089510+ (Heterosigma akashiwo CCMP452)
ATGGAGGAGGTTGAGAAGGTACGACGCCGGCGGAAGGAGCGCGAAGAGGA
GCTGGAGGAAATGGAGAGGCTGAAGGCCGAGGAGAGTCGGCTGCGCGAGG
TACAGCAGTTTGGAGACTGGCAAAAGAAGGAGGAGGATTTCCACCGGTAC
CAGGCGAAGATCCGCTCGAAGATCCGGCTGATCGAGGACCGCGCCAAGCC
CATCGACCTGCTGGCCAAGAACCTGCTCCTCTTCTCTGGGGAGGAGGAGG
AGGAGGAAGAGCTGGACGGCGGCCGGTGCAAGTACAAGGGCGGCACGAAC
CTGAGCATCGACCACCTGGAGGTGGAGCTGCGGGAGCCGTACCTTATCTT
CCAGGACCTGACCGTCGCGGAGCTGCGCACCCTGCAGGGGGACATCCAGA
CCTACCAGGAGCTGCAGGGAAAGGAGGAGGGCTCGCTCCCCGCGCGGTTC
TGGGGCGCGCTGGCCGCCATCTGCGCGGACGAGCTGAAGCACGCGACCCA
CCGCGCGGGCACCGAGGCCAAGGCGGCAGCGCTGGGCGGCGGCGGCGGGG
CGGCCGGCCGGGACAACATCAAGGGGGGCATGCACGAGGCGGTCCGCGGG
GAGGTGGAGGCGCTCTTCGGCGGGCGCTCGGCCGTGTACCTGACGAAGAT
GGCGGGCAGCTGGAAGCTGGCGGCGGAGGGGCACGGCGCGGGCGCGTACG
GGGCGGGCGGCGCACTTCGAAGTACTGCCCGTGCTGGAGCACCTGGCCGC
GGTACCGCGCTGGAAGGCCGCGTGGCGCGAAAGGTACCAGCACATGCTGC
AGGGCAGCTGACCGGGCTGGAGGGCGCGGCGAAGCGTGTTGGGTCGAGGA
GCGCGTTAAAGGCGCGCGCTGCCGGGAGGCCTCCGAGGAGGAGGGGGACG
ACGCCGGCGCGGACAGCGACGGCAGCTACGTGGTGGACGAGAGCGCGGAG
GCCGTGGCCATGGAGCGGGCGGAGAAGGCCAAGGGCATGGACGACCTGGA
GGAGGCGCTGGGCCTGCAGGACGAGGTGA
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