mRNA_H-akashiwo_Contig1162.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1162.4.1
Unique NamemRNA_H-akashiwo_Contig1162.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: L0DJ94_SINAD (Pyridoxamine 5''-phosphate oxidase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) TaxID=886293 RepID=L0DJ94_SINAD)

HSP 1 Score: 97.1 bits (240), Expect = 2.350e-23
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    7 LAGPSKGLFCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALAR 231
            + GP      YLDL GSG+ET AHLR+NGR+T+MFCA  G P ILRLYG+G  +EPG PGWDD++A FP     R
Sbjct:   47 ILGPKT--VAYLDLVGSGIETLAHLRQNGRLTLMFCALEGRPLILRLYGKGRAVEPGEPGWDDLVANFPPHPATR 119          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A2W6CKV5_9ACTN (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A2W6CKV5_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 4.470e-23
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   34 CYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALARFPPEKLRNAVL 264
             YLDL GSGVET AH++ENGR+T MFCAF GPP+ILRLYGRG  L+PG  G++D+L         RFPPE+   AV+
Sbjct:   55 AYLDLTGSGVETIAHIQENGRITFMFCAFEGPPRILRLYGRGEVLQPGDSGFEDLLG--------RFPPEEGTRAVI 123          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A1N6DLM1_9BACT (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=A0A1N6DLM1_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 6.620e-23
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    7 LAGPSKGLFCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALAR 231
            + GP      YLDL GSG+ET AHLR+NGR+T+MFCA  G P ILRLYG+G  +EPG PGWDD+L  FP     R
Sbjct:   47 ILGPKS--VAYLDLIGSGIETLAHLRQNGRLTLMFCALEGRPLILRLYGQGRAVEPGEPGWDDLLTHFPHHPATR 119          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A3D0I9V1_9DELT (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D0I9V1_9DELT)

HSP 1 Score: 95.5 bits (236), Expect = 1.100e-22
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 1
Query:   34 CYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALAR 231
             YLDL GSG+ET AHLRENGR+T+MFCAF GPPKILRL+GRG  +EPG   W+ + A FP    AR
Sbjct:   54 AYLDLTGSGIETVAHLRENGRITLMFCAFEGPPKILRLHGRGEVIEPGHAEWEALAARFPPHPGAR 119          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A5B9WAN7_9BACT (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9WAN7_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 9.810e-22
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:    7 LAGPSKGLFCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALAR 231
            + GP++    YLDL GSG+ET AHLRENGR+T+MFCAF G P I+RLYG+G  +EP   GWD ++  FP    AR
Sbjct:   47 ILGPTQ--VAYLDLTGSGIETVAHLRENGRITIMFCAFEGRPLIVRLYGKGRVVEPSDAGWDGLIGAFPPHPGAR 119          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A2D5Z1M2_9BACT (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A2D5Z1M2_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 1.200e-21
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   31 FCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFP 213
              YLDL GSG+ET AHL++NGR+  MFCAF GPP+ILRLYGRG  LEPG P ++ +L EFP
Sbjct:   47 IAYLDLMGSGIETVAHLKDNGRIVFMFCAFQGPPRILRLYGRGEALEPGHPEFEALLREFP 107          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: UPI001F1318E6 (pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Pseudonocardia alaniniphila TaxID=75291 RepID=UPI001F1318E6)

HSP 1 Score: 92.4 bits (228), Expect = 1.710e-21
Identity = 47/79 (59.49%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   31 FCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALARFPPEKLRNAVLV 267
            F YLDL GSGVET AHLRENGR+ VMFCAF G P I+RL+G G  + PG PG+D+VLA F  E   R P   LR  ++V
Sbjct:   54 FAYLDLTGSGVETIAHLRENGRICVMFCAFDGRPSIVRLHGTGRAVTPGDPGFDEVLAGFGEEGEQRRP--YLRAVIVV 130          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A2N2ADN6_9GAMM (Pyridoxamine 5'-phosphate oxidase n=1 Tax=Gammaproteobacteria bacterium HGW-Gammaproteobacteria-1 TaxID=2013791 RepID=A0A2N2ADN6_9GAMM)

HSP 1 Score: 90.9 bits (224), Expect = 5.030e-21
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1
Query:    7 LAGPSKGLFCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFP 213
            + GP +    +LDL GSG E+ AHL ENGRVTVMFCAFAGPP+ILRLYGRG  + PG+  WD +  +FP
Sbjct:   47 VLGPHE--VAWLDLTGSGNESAAHLAENGRVTVMFCAFAGPPRILRLYGRGTVVLPGSAAWDSLRPQFP 113          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A846F9L7_9CYAN (Pyridoxamine 5'-phosphate oxidase family protein n=1 Tax=Cyanothece sp. SIO1E1 TaxID=2607788 RepID=A0A846F9L7_9CYAN)

HSP 1 Score: 90.5 bits (223), Expect = 7.110e-21
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   34 CYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALAR 231
             YLDL GSG+ET AHLRENGR+T+MFCAF G PKILRLYG G   E G+PG++ + + FP    AR
Sbjct:   54 AYLDLAGSGIETVAHLRENGRITIMFCAFEGAPKILRLYGEGEVHEKGSPGYEALKSNFPPYEGAR 119          
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Match: A0A6G0A4X1_9ACTN (Pyridoxamine 5'-phosphate oxidase family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A4X1_9ACTN)

HSP 1 Score: 90.5 bits (223), Expect = 7.800e-21
Identity = 42/75 (56.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    7 LAGPSKGLFCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLYGRGWCLEPGAPGWDDVLAEFPAEALAR 231
            + GP+     YLDL GSGVET AH+R+NGRVT+MFCAF GPP++LRLYG G  + P  PG D++L  FP     R
Sbjct:   47 VLGPTT--VAYLDLTGSGVETIAHIRQNGRVTIMFCAFEGPPRVLRLYGSGEVIRPDDPGSDELLRLFPGHGGVR 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1162.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L0DJ94_SINAD2.350e-2358.67Pyridoxamine 5''-phosphate oxidase n=1 Tax=Singuli... [more]
A0A2W6CKV5_9ACTN4.470e-2359.74Pyridoxamine 5'-phosphate oxidase n=1 Tax=Acidimic... [more]
A0A1N6DLM1_9BACT6.620e-2358.67Pyridoxamine 5'-phosphate oxidase n=1 Tax=Singulis... [more]
A0A3D0I9V1_9DELT1.100e-2265.15Pyridoxamine 5'-phosphate oxidase n=1 Tax=Deltapro... [more]
A0A5B9WAN7_9BACT9.810e-2256.00Pyridoxamine 5'-phosphate oxidase n=1 Tax=Aquispha... [more]
A0A2D5Z1M2_9BACT1.200e-2165.57Pyridoxamine 5'-phosphate oxidase n=1 Tax=Phycisph... [more]
UPI001F1318E61.710e-2159.49pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A2N2ADN6_9GAMM5.030e-2160.87Pyridoxamine 5'-phosphate oxidase n=1 Tax=Gammapro... [more]
A0A846F9L7_9CYAN7.110e-2162.12Pyridoxamine 5'-phosphate oxidase family protein n... [more]
A0A6G0A4X1_9ACTN7.800e-2156.00Pyridoxamine 5'-phosphate oxidase family protein n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1162contigH-akashiwo_Contig1162:154073..154644 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog886293.Sinac_4573
PFAMsPutative_PNPOx
Model size267
Max annot lvl203682|Planctomycetes
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.84e-24
EggNOG OGsCOG3576@1|root,COG3576@2|Bacteria,2IZI0@203682|Planctomycetes
DescriptionPfam:Pyridox_oxidase
Cds size267
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387102.9209085-CDS-H-akashiwo_Contig1162:154072..1541201681387102.9209085-CDS-H-akashiwo_Contig1162:154072..154120Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 154073..154120 -
1681387102.9311438-CDS-H-akashiwo_Contig1162:154425..1546441681387102.9311438-CDS-H-akashiwo_Contig1162:154425..154644Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1162 154426..154644 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1162.4.1prot_H-akashiwo_Contig1162.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1162 154073..154644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1162.4.1

>prot_H-akashiwo_Contig1162.4.1 ID=prot_H-akashiwo_Contig1162.4.1|Name=mRNA_H-akashiwo_Contig1162.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=89bp
HPLAGPSKGLFCYLDLGGSGVETPAHLRENGRVTVMFCAFAGPPKILRLY
GRGWCLEPGAPGWDDVLAEFPAEALARFPPEKLRNAVLV
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mRNA from alignment at H-akashiwo_Contig1162:154073..154644-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1162.4.1 ID=mRNA_H-akashiwo_Contig1162.4.1|Name=mRNA_H-akashiwo_Contig1162.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=572bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:154073..154644- (Heterosigma akashiwo CCMP452)
CACCCGCTGGCGGGGCCCTCCAAGGGGCTCTTCTGCTACCTGGACCTGGG CGGCAGCGGCGTGGAGACCCCCGCGCACCTGCGCGAGAACGGGCGGGTCA CCGTCATGTTCTGCGCCTTCGCGGGCCCCCCCAAGATCCTCCGGCTGTAC GGCCGCGGCTGGTGCCTGGAGCCCGGGGCGCCCGGCTGGGACGACGTCCT GGCCGAGTTTCCAGCGGAGGTAGGTGCTCGCGCGAAGAGCATGGTGGTGG AGGAGTTTCCGTTCGTTTCCTTTTGTGTACAAGCCAACAGCAAGACGAAA ATCACACCCCTAGCCAATTTGGGAGGGGCAAACAAGGAGAAAAGACCACC TACCACTGACTGGTGGTCCGGAAGAGAGGTTGGAGGCGATCACTTCTTCT GTCTCAGCCTGGCCGTTTAGGTTCTCCTTCACTAGTCGCCGTCGCTTCCT CCCTCGCCTCCGTCCCTGTTCGACAACAACAACCACCTCATCGGGCGCTT CCCTCTCTGCCTCCGGACCACCAGGCGCTGGCGCGGTTCCCCCCGGAGAA GCTGCGGAATGCGGTCCTCGTG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1162:154073..154644-

>mRNA_H-akashiwo_Contig1162.4.1 ID=mRNA_H-akashiwo_Contig1162.4.1|Name=mRNA_H-akashiwo_Contig1162.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=267bp|location=Sequence derived from alignment at H-akashiwo_Contig1162:154073..154644- (Heterosigma akashiwo CCMP452)
CACCCGCTGGCGGGGCCCTCCAAGGGGCTCTTCTGCTACCTGGACCTGGG
CGGCAGCGGCGTGGAGACCCCCGCGCACCTGCGCGAGAACGGGCGGGTCA
CCGTCATGTTCTGCGCCTTCGCGGGCCCCCCCAAGATCCTCCGGCTGTAC
GGCCGCGGCTGGTGCCTGGAGCCCGGGGCGCCCGGCTGGGACGACGTCCT
GGCCGAGTTTCCAGCGGAGGCGCTGGCGCGGTTCCCCCCGGAGAAGCTGC
GGAATGCGGTCCTCGTG
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