mRNA_H-akashiwo_Contig1156.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1156.2.1
Unique NamemRNA_H-akashiwo_Contig1156.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A7S4DCW1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCW1_HETAK)

HSP 1 Score: 113 bits (283), Expect = 3.510e-28
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL
Sbjct:  332 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 384          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A7S2XWB7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWB7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.570e-16
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GSAG+A+RYL AVQ+L KLE+ K H+KTFRP YLVLCG P  RDHL++F + +
Sbjct:   32 GSAGEAYRYLTAVQNLHKLEKIKKHIKTFRPSYLVLCGDPSHRDHLLRFTSYI 84          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A7S2TIY3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TIY3_9EUKA)

HSP 1 Score: 57.8 bits (138), Expect = 5.370e-9
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GSA Q+W + +  + ++++ +  SHVKT+RP YLV+ G+P+ R HL +FV  L
Sbjct:   54 GSANQSWEFYSVEKAMMRMRRFVSHVKTYRPHYLVMTGEPQERLHLARFVASL 106          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A7S4DVY7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DVY7_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 7.610e-9
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GSA QAW + +  + ++++ +  SHVKT+RP YLV+ G+PE R H+ +FV  L
Sbjct:  122 GSANQAWEFYSVEKSMMRMRRFVSHVKTYRPHYLVMTGEPEDRLHMARFVGSL 174          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A0V1C1V4_TRISP (Solute carrier family 12 member 2 (Fragment) n=16 Tax=Trichinella TaxID=6333 RepID=A0A0V1C1V4_TRISP)

HSP 1 Score: 59.3 bits (142), Expect = 8.290e-9
Identity = 26/53 (49.06%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GS+ +A  YL+A++ +LKL+ T+ H+KT+RPQ L+LCG P  R  LI FV+ +
Sbjct:  585 GSSLEANSYLSALRRMLKLQFTRDHIKTYRPQILLLCGSPVRRPELIDFVSNI 637          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A1B6CFU0_9HEMI (Uncharacterized protein n=2 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6CFU0_9HEMI)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-8
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVT 154
            GS+ QA RY +A+  LLKL  T  HVK +RPQ LVLCGQP+ R  L+    
Sbjct:  571 GSSTQAQRYKSALSSLLKLSVTTEHVKNYRPQVLVLCGQPQNRPPLVDLAN 621          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A077ZCE5_TRITR (Solute carrier family 12 n=3 Tax=Trichuris TaxID=36086 RepID=A0A077ZCE5_TRITR)

HSP 1 Score: 56.6 bits (135), Expect = 7.400e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GS+GQA  Y  A+  +L+L  T+ HVK +RPQ LV+ G+P  R HLI F + +
Sbjct:  531 GSSGQAHAYRTALNAMLRLSHTEEHVKNYRPQMLVMTGEPMLRPHLIDFASSI 583          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: UPI001455A273 (solute carrier family 12 member 3-like isoform X1 n=2 Tax=Asterias rubens TaxID=7604 RepID=UPI001455A273)

HSP 1 Score: 55.5 bits (132), Expect = 1.900e-7
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GS+ QA+ Y  A+ + LKL    +HVKTFRPQ LVL G PE R  L+ FV+ +
Sbjct:  634 GSSNQAFIYTQALTNTLKLNNIPAHVKTFRPQVLVLTGVPECRPALVHFVSHI 686          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A2C9JCS0_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JCS0_BIOGL)

HSP 1 Score: 55.5 bits (132), Expect = 1.900e-7
Identity = 27/58 (46.55%), Postives = 37/58 (63.79%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQLGGRLG 175
            GS+ QA  Y + +Q  LKL +  +HVK FRPQ LVL G+PE R  L+ F T +  ++G
Sbjct:  713 GSSTQAHVYRSLLQSALKLVRIGTHVKNFRPQVLVLSGEPEARPTLVDFCTHITKKMG 770          
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Match: A0A183C4L7_GLOPA (G_PROTEIN_RECEP_F1_2 domain-containing protein n=1 Tax=Globodera pallida TaxID=36090 RepID=A0A183C4L7_GLOPA)

HSP 1 Score: 55.5 bits (132), Expect = 1.900e-7
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 2
Query:    2 GSAGQAWRYLAAVQHLLKLEQTKSHVKTFRPQYLVLCGQPEGRDHLIQFVTQL 160
            GS+GQA  Y  A+Q++ KLE+T+ HVK +RPQ +VL G P  R  L+ F   +
Sbjct: 1144 GSSGQAHSYRNALQYVSKLERTEEHVKNYRPQLMVLTGNPAARAGLVDFAYSI 1196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1156.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DCW1_HETAK3.510e-28100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XWB7_9STRA3.570e-1664.15Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2TIY3_9EUKA5.370e-943.40Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S4DVY7_9EUKA7.610e-945.28Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A0V1C1V4_TRISP8.290e-949.06Solute carrier family 12 member 2 (Fragment) n=16 ... [more]
A0A1B6CFU0_9HEMI2.110e-852.94Uncharacterized protein n=2 Tax=Clastoptera arizon... [more]
A0A077ZCE5_TRITR7.400e-847.17Solute carrier family 12 n=3 Tax=Trichuris TaxID=3... [more]
UPI001455A2731.900e-750.94solute carrier family 12 member 3-like isoform X1 ... [more]
A0A2C9JCS0_BIOGL1.900e-746.55Uncharacterized protein n=1 Tax=Biomphalaria glabr... [more]
A0A183C4L7_GLOPA1.900e-747.17G_PROTEIN_RECEP_F1_2 domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1156contigH-akashiwo_Contig1156:41515..42495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size180
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387100.4398162-CDS-H-akashiwo_Contig1156:41514..415911681387100.4398162-CDS-H-akashiwo_Contig1156:41514..41591Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 41515..41591 -
1681387100.4503734-CDS-H-akashiwo_Contig1156:42392..424951681387100.4503734-CDS-H-akashiwo_Contig1156:42392..42495Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1156 42393..42495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1156.2.1prot_H-akashiwo_Contig1156.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1156 41515..42495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1156.2.1

>prot_H-akashiwo_Contig1156.2.1 ID=prot_H-akashiwo_Contig1156.2.1|Name=mRNA_H-akashiwo_Contig1156.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=60bp
GQRGAGLAVPGGRAAPAEARADQEPRQDLPAPVPGALRAARGPRPPDPVR
DAARRAPRP*
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mRNA from alignment at H-akashiwo_Contig1156:41515..42495-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1156.2.1 ID=mRNA_H-akashiwo_Contig1156.2.1|Name=mRNA_H-akashiwo_Contig1156.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=981bp|location=Sequence derived from alignment at H-akashiwo_Contig1156:41515..42495- (Heterosigma akashiwo CCMP452)
GGGCAGCGCGGGGCAGGCCTGGCGGTACCTGGCGGCCGTGCAGCACCTGC TGAAGCTCGAGCAGACCAAGAGCCACGTCAAGACCTTCCGGCCCCAGTAC CTGGTGGGCCGCCGGGGGCGCCCCCGCGCCTTCCAAATCAAGAGTGGAAA CGGCCCAGACGTCGCGACAACAATGATCGAACCCACGTGCTTCTGTTTTC AGTCTTGCTGCAAATAAATATTCGAATGGTTGAGGTGTTGGGTTTAAACA GTGAGGCCGCTTCCATCAGCAGCGAGTATAGCTCTACATTGCCAAAGAGG TGACACGTATCAAAGGTTTGTAAACCATTGTTGCAAGATCTGACGTGGAC AGCGTTGTTTTTCTGGCATAATATGCCACCAGCCGAGGCTGGTGGCTGGC CTTCGTCAACACACAACCTTCGTCAATACGCCTTGTCAGTAACATTAAAC CAAATGAAGATGGGTATAGTATTATAAATATCCATCCATTATACATTTGT TGCTAGAGAGCATTTGTTCCCCTCTATTAAATAATAAAAAATGCAGCACG TTCCACCATGCCAGCCTGCTACTGCTTGGCCTCTGCGTCTTGCGCGTAGC AACTCGTCCCCCCTACACCTGCACCCTTGTTCCTTTCCTCAATCATGCCT TGCATTCTCCATCGCTGCATGTTGTACAATACACCTCTTACTGCAACCTC TAAAGGGCATGCCCAGCCAGCAAGACACGCCAGCCCAGACGCACTTCGCG AGACCACACAGAGCGCCAAAAAGAGCGAGATCAGTTTTGCATGATGGCAA CGATGCGAAAGGGCACAGTAAACGATCGGGGTGCCAGCGCACAGACGGCC CGTCGTCGGCGCCGACGACGTGGGCCTTCTCCCGGCCCCTCCCCCCCCCC CCAGGTGCTCTGCGGGCAGCCCGAGGGCCGCGACCACCTGATCCAGTTCG TGACGCAGCTCGGAGGGCGCCTCGGCCGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1156:41515..42495-

>mRNA_H-akashiwo_Contig1156.2.1 ID=mRNA_H-akashiwo_Contig1156.2.1|Name=mRNA_H-akashiwo_Contig1156.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=180bp|location=Sequence derived from alignment at H-akashiwo_Contig1156:41515..42495- (Heterosigma akashiwo CCMP452)
GGGCAGCGCGGGGCAGGCCTGGCGGTACCTGGCGGCCGTGCAGCACCTGC
TGAAGCTCGAGCAGACCAAGAGCCACGTCAAGACCTTCCGGCCCCAGTAC
CTGGTGCTCTGCGGGCAGCCCGAGGGCCGCGACCACCTGATCCAGTTCGT
GACGCAGCTCGGAGGGCGCCTCGGCCGTGA
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