mRNA_H-akashiwo_Contig114.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig114.16.1
Unique NamemRNA_H-akashiwo_Contig114.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig114.16.1 vs. uniprot
Match: A0A7S3XP81_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XP81_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 6.670e-11
Identity = 29/75 (38.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   10 YDRYIYSVSKVPFINYSSYEYGLLAGPVFSVVYTVSAIAMSSTFRKMRVKGMTLVMAFWSSVIMLVALSDSFWQV 234
            Y R+++SV+K+PFI+YSS EYGLLAGP+F++ YT++ + +    +K R   +   +    +++ L A++ SF Q+
Sbjct:   32 YARFVFSVAKIPFIDYSSVEYGLLAGPLFNIAYTITGLVLGRWIQKKRTTTLACFVGVSGALVALCAITTSFLQL 106
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BLAST of mRNA_H-akashiwo_Contig114.16.1 vs. uniprot
Match: A0A6H5L2A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A6_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 3.020e-9
Identity = 28/78 (35.90%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 TSQYDRYIYSVSKVPFINYSSYEYGLLAGPVFSVVYTVSAIAMSSTFRKMRVKGMTLVMAFWSSVIMLVALSDSFWQV 234
            ++QYDRY++SVSK+PF++Y S ++ L+AGP F+   +++ + +S +     V+ ++     WS+    VA +  FWQV
Sbjct:   43 SNQYDRYLFSVSKIPFVDYDSLDFALIAGPFFTAFNSLAGVVLSFSGGVRPVRLLSTACLIWSASTGAVAFTHKFWQV 120
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BLAST of mRNA_H-akashiwo_Contig114.16.1 vs. uniprot
Match: A0A482S7R0_9ARCH (MFS transporter n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7R0_9ARCH)

HSP 1 Score: 56.6 bits (135), Expect = 1.640e-7
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   10 YDRYIYSVSKVPFINYSSYEYGLLAGPVFSVVYTVSAIAMSSTFRKMRVKGMTL 171
            +DRY+ +VS VP+++Y+SYEY +LAGP F+VVYTV  +  +  F      G+T+
Sbjct:   30 FDRYLIAVSPVPYVDYTSYEYSVLAGPAFTVVYTVGGLLFALYFMDESATGLTI 83
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BLAST of mRNA_H-akashiwo_Contig114.16.1 vs. uniprot
Match: D7G660_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G660_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 2.110e-6
Identity = 25/73 (34.25%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:   16 RYIYSVSKVPFINYSSYEYGLLAGPVFSVVYTVSAIAMSSTFRKMRVKGMTLVMAFWSSVIMLVALSDSFWQV 234
            RY++SVSK+PF++Y S ++ L+AGP F+   +++ + +S       V+ ++     WS+    VA +  FWQV
Sbjct:    8 RYLFSVSKIPFVDYDSLDFALIAGPFFTAFNSLAGVVLSLVGGVRPVRLLSTACLVWSASTGAVAFTHKFWQV 80
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BLAST of mRNA_H-akashiwo_Contig114.16.1 vs. uniprot
Match: A0A7S3H411_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H411_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.840e-5
Identity = 19/38 (50.00%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:   10 YDRYIYSVSKVPFINYSSYEYGLLAGPVFSVVYTVSAI 123
            +DR + SVS +P+++Y SYEY +LAGP F++VYT+  +
Sbjct:   32 FDRALISVSPIPYVDYGSYEYSVLAGPAFTIVYTLGGV 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig114.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S3XP81_HETAK6.670e-1138.67Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6H5L2A6_9PHAE3.020e-935.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A482S7R0_9ARCH1.640e-746.30MFS transporter n=1 Tax=archaeon TaxID=1906665 Rep... [more]
D7G660_ECTSI2.110e-634.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3H411_9STRA4.840e-550.00Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig114contigH-akashiwo_Contig114:1099135..1100503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G660
PFAMsMFS_1
Model size242
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.46e-07
EggNOG OGsCOG0477@1|root,KOG1330@2759|Eukaryota
Descriptionsphingolipid transporter activity
Cds size240
COG categoryEGP
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387095.1161249-CDS-H-akashiwo_Contig114:1099134..10992151681387095.1161249-CDS-H-akashiwo_Contig114:1099134..1099215Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig114 1099135..1099215 -
1681387095.1277478-CDS-H-akashiwo_Contig114:1100187..11003071681387095.1277478-CDS-H-akashiwo_Contig114:1100187..1100307Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig114 1100188..1100307 -
1681387095.1372204-CDS-H-akashiwo_Contig114:1100464..11005031681387095.1372204-CDS-H-akashiwo_Contig114:1100464..1100503Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig114 1100465..1100503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig114.16.1prot_H-akashiwo_Contig114.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig114 1099135..1100503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig114.16.1

>prot_H-akashiwo_Contig114.16.1 ID=prot_H-akashiwo_Contig114.16.1|Name=mRNA_H-akashiwo_Contig114.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
TSQYDRYIYSVSKVPFINYSSYEYGLLAGPVFSVVYTVSAIAMSSTFRKM
RVKGMTLVMAFWSSVIMLVALSDSFWQVT*
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mRNA from alignment at H-akashiwo_Contig114:1099135..1100503-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig114.16.1 ID=mRNA_H-akashiwo_Contig114.16.1|Name=mRNA_H-akashiwo_Contig114.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1369bp|location=Sequence derived from alignment at H-akashiwo_Contig114:1099135..1100503- (Heterosigma akashiwo CCMP452)
ACCAGTCAGTATGATAGATATATCTACAGCGTTTCCAAGGTAATACCTCA
ATCAGTATATGATTTTCGTTGTAAGTATGAACTTTCAATGTAACATAACA
TATGAAACCATGCAGCGACAAAGACTACCCTTCTGCCTCCCCTTTTTATT
GCAACTTCCTTTACAACTACTCTTGGTCATTCATTTTTATGTGCAGGTAC
CCTTCATCAATTACAGTTCTTACGAGTATGGACTACTTGCTGGGCCAGTC
TTCTCAGTTGTGTACACTGTATCTGCAATTGCCATGAGCTCTACTTTTCG
AAAAATGAGAGTCAAGGTGAACAGCATCACACCAGCAGGATATTAAGCAA
CATATATTATGGTGATGATGATGATGGTGGTGATGACTTTAATTTAACAT
CAGACCATTCCACTTCTAGTTCCCATCTCTTGCACTCGTACTCATCACCA
TATTCATCACCAAATTCTTAATGGGGGAGAAAGCAACAACCCACTGAGTC
CTACTTCCCTTGTGGTTGCTTGAACCTCGCCTTACCAGAAACCTAGTCTG
CTCTTGTTCACATGATCCTAGCAATCATCTCCACCTTCCTCAGCATATTC
ACCATACTCGCCTGCGCATCTTTCCTGGACACTGAGGTCACTCACCTCTT
GCTGCTGCGCCCCCCCTTGCCCCCTCCCATAGTTTTCACACTGCGCCCCG
TCCCGTTTCCCTCGGTTGTGCAGATACCCTGCCAAGTTGCAGTTTCCCAA
CAGAAGCTGAAGCACCCAATGGCCCTCGACGGCCCTGCCCCCCTTCCAGA
TGGTCTCCTTGATGCCATCCAACGTAGTAGCAAATCACAGATACGCCTTA
TTCTCCCCCATGTCCGGTCTGGGGCCGCCATGCTCCAGATCTCTCCCGTG
TCCATCCCCGACCCATGCTCTAGATCTCTCCACTCCTGTGCCCAGACTCT
CCATGTCTGCTCCTTCGCCTTGCCCTTGTGAAGGCCCTTGGCACACCCAC
CTCCCCACCCTCACCCCTCCTTTGCCAGCTTGTCTGCCTTCCCATTCCCC
TCGTGCCCCTGGTGACCTGGAATGTACACAAATGAGTTCCGCCCATCCAC
TTTCTGCGCTATCTCACTCGCCATGCGCGCCTCCCCCGTCTTCTGTGCTT
AATAATAATATAATATCATAAGATTGTATGATGCTGAGAATGATTTAATT
TATTTTTTGTTGAGGTGGAATGAATGTAGTGAGCCATATATAATCATGAA
ACGCCATGGTGGTGTGCATGCTGTTCCTTTATTACTAGGGCATGACTCTC
GTCATGGCTTTCTGGAGCTCAGTCATAATGCTCGTTGCTCTCTCTGATAG
CTTCTGGCAGGTGACGTGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig114:1099135..1100503-

>mRNA_H-akashiwo_Contig114.16.1 ID=mRNA_H-akashiwo_Contig114.16.1|Name=mRNA_H-akashiwo_Contig114.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig114:1099135..1100503- (Heterosigma akashiwo CCMP452)
ACCAGTCAGTATGATAGATATATCTACAGCGTTTCCAAGGTACCCTTCAT
CAATTACAGTTCTTACGAGTATGGACTACTTGCTGGGCCAGTCTTCTCAG
TTGTGTACACTGTATCTGCAATTGCCATGAGCTCTACTTTTCGAAAAATG
AGAGTCAAGGGCATGACTCTCGTCATGGCTTTCTGGAGCTCAGTCATAAT
GCTCGTTGCTCTCTCTGATAGCTTCTGGCAGGTGACGTGA
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