mRNA_H-akashiwo_Contig1136.14.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1136.14.1
Unique NamemRNA_H-akashiwo_Contig1136.14.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: A0A8J9TK87_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9TK87_BRAAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.250e-14
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFIL 243
            W Q W+ + +A  P N +D L+  +   +IFPNIHI+  ILA LPV T+S ERS SLLRRLK +LR+S G++RL AL  IL
Sbjct:  688 WKQKWTDLPQAGRPKNAIDALSACNR--SIFPNIHILLKILATLPVSTASSERSFSLLRRLKDYLRNSTGQERLTALLLIL 766          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: X1X8F3_ACYPI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Acyrthosiphon pisum TaxID=7029 RepID=X1X8F3_ACYPI)

HSP 1 Score: 70.5 bits (171), Expect = 1.300e-13
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W Q WS  +E   P N LDTL+    +  +FP+I+I+  +LA+LPV T+SVERS S L+R+KT+LR+S GE RLN LA +
Sbjct:   35 WKQKWSN-EENDLPKNALDTLSKCPED--LFPHINILLKLLAILPVSTASVERSFSSLKRIKTYLRNSTGEARLNGLALM 111          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: A0A4Y2RKI0_ARAVE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2RKI0_ARAVE)

HSP 1 Score: 68.9 bits (167), Expect = 2.440e-13
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W + WSQ K    P   + +L   D  +  FPNI+I+  +LAVLPV  ++VERS S LRRLKT+LR++  E RLN LA +
Sbjct:    3 WKEKWSQEKSENLPKTAISSLEKCDKTF--FPNIYILLKLLAVLPVSVATVERSFSSLRRLKTYLRNTTSESRLNGLALL 80          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: A0A4Y2Q6P2_ARAVE (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2Q6P2_ARAVE)

HSP 1 Score: 68.2 bits (165), Expect = 4.900e-13
Identity = 39/81 (48.15%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFIL 243
            W + WSQ K    P   + +L   D  +  FPNI+I+  +LAVLPV  ++VERS S LRRLKT LR++  E RLN LA  L
Sbjct:    3 WKEKWSQEKSENLPKTAISSLEKCDKTF--FPNIYILLKLLAVLPVSVATVERSFSSLRRLKTCLRNTTSESRLNGLALFL 81          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: UPI000DC12D65 (52 kDa repressor of the inhibitor of the protein kinase-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC12D65)

HSP 1 Score: 72.4 bits (176), Expect = 5.210e-13
Identity = 41/82 (50.00%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    1 WAQAWSQVK--EAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W   W++VK    K P   L+ L++ DV+  +FP IH +  ILA LPV  ++ ERS S LRRLKTWLR+ M EDRLN LA +
Sbjct:  679 WLAKWNRVKMNNGKIPETALEVLDVCDVD--MFPAIHTLIHILATLPVSVATAERSFSTLRRLKTWLRTRMVEDRLNGLALM 758          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: A0A4Y2KZB0_ARAVE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2KZB0_ARAVE)

HSP 1 Score: 67.8 bits (164), Expect = 6.770e-13
Identity = 37/80 (46.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W + WSQ K    P   + +L   D  +  FPNI+I+  +LAV+PV  ++VERS S LRRLKT+LR++  E RLN LA +
Sbjct:    3 WKEKWSQEKSENLPKTAISSLENCDKTF--FPNIYILLKLLAVVPVSVATVERSFSSLRRLKTYLRNTTSESRLNGLALL 80          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: A0A4Y2BBB3_ARAVE (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2BBB3_ARAVE)

HSP 1 Score: 67.8 bits (164), Expect = 6.940e-13
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W + WSQ K    P   + +L   D  +  FPNI+I+  +LAVLPV  ++VERS S LRRLKT+LR++  E RLN LA +
Sbjct:    3 WKEKWSQEKSENLPKIAISSLEKCDKTF--FPNIYILLKLLAVLPVSVATVERSFSSLRRLKTYLRNTTSESRLNGLALL 80          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: A0A6P7FZA9_DIAVI (52 kDa repressor of the inhibitor of the protein kinase-like n=1 Tax=Diabrotica virgifera virgifera TaxID=50390 RepID=A0A6P7FZA9_DIAVI)

HSP 1 Score: 70.5 bits (171), Expect = 1.010e-12
Identity = 38/80 (47.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W + WSQ K    P + + +L   D ++  FPNI+++  +LAVLPV  ++VERS S LRRLKT+LR+S  E+RLN LA +
Sbjct:  156 WKERWSQEKYENLPKSAVSSLEKCDQDF--FPNIYVLLKLLAVLPVSVATVERSFSSLRRLKTYLRNSTSENRLNGLALL 233          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: J9LQX1_ACYPI (Dimer_Tnp_hAT domain-containing protein n=3 Tax=Aphidinae TaxID=133076 RepID=J9LQX1_ACYPI)

HSP 1 Score: 68.2 bits (165), Expect = 1.560e-12
Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFIL 243
            W   W   K+   PH  ++ LN  + E  +FPNIH +  +LA LPV ++++ERS S L+R+KT+LR+S G++RL  LA ++
Sbjct:   54 WKIKWIAFKDVDRPHTAVEALNYCNPE--LFPNIHFLLKVLATLPVSSATLERSFSTLKRVKTFLRNSAGQERLTGLAILI 132          
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Match: UPI000CD9CD98 (52 kDa repressor of the inhibitor of the protein kinase-like n=1 Tax=Lactuca sativa TaxID=4236 RepID=UPI000CD9CD98)

HSP 1 Score: 70.9 bits (172), Expect = 1.560e-12
Identity = 41/80 (51.25%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSSVERSVSLLRRLKTWLRSSMGEDRLNALAFI 240
            W Q WS  +E   P N LDTL+    +  +FP+I+I+  +LA+LPV T+SVERS S L+R+KT+LR+S GE RLN LA +
Sbjct:  276 WKQKWSN-EENNLPKNALDTLSKCPED--LFPHINILLKLLAILPVSTASVERSFSSLKRIKTYLRNSTGEARLNGLALM 352          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1136.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9TK87_BRAAE1.250e-1453.09Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
X1X8F3_ACYPI1.300e-1351.25Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ac... [more]
A0A4Y2RKI0_ARAVE2.440e-1347.50Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ar... [more]
A0A4Y2Q6P2_ARAVE4.900e-1348.15Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ar... [more]
UPI000DC12D655.210e-1350.0052 kDa repressor of the inhibitor of the protein k... [more]
A0A4Y2KZB0_ARAVE6.770e-1346.25Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ar... [more]
A0A4Y2BBB3_ARAVE6.940e-1347.50Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ar... [more]
A0A6P7FZA9_DIAVI1.010e-1247.5052 kDa repressor of the inhibitor of the protein k... [more]
J9LQX1_ACYPI1.560e-1241.98Dimer_Tnp_hAT domain-containing protein n=3 Tax=Ap... [more]
UPI000CD9CD981.560e-1251.2552 kDa repressor of the inhibitor of the protein k... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1136contigH-akashiwo_Contig1136:375278..375523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog38654.XP_006038392.1
PFAMsDimer_Tnp_hAT
Model size246
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.96e-16
EggNOG OGs2EKCY@1|root,2SQAN@2759|Eukaryota,3AMN5@33154|Opisthokonta,3C0HI@33208|Metazoa,3DH1Z@33213|Bilateria,48JY6@7711|Chordata,49GQH@7742|Vertebrata
DescriptionhAT family C-terminal dimerisation region
Cds size246
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.1291876-CDS-H-akashiwo_Contig1136:375277..3755231681387094.1291876-CDS-H-akashiwo_Contig1136:375277..375523Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1136 375278..375523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1136.14.1prot_H-akashiwo_Contig1136.14.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1136 375278..375523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1136.14.1

>prot_H-akashiwo_Contig1136.14.1 ID=prot_H-akashiwo_Contig1136.14.1|Name=mRNA_H-akashiwo_Contig1136.14.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=82bp
WAQAWSQVKEAKWPHNVLDTLNITDVEWNIFPNIHIIFLILAVLPVRTSS
VERSVSLLRRLKTWLRSSMGEDRLNALAFIL*
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mRNA from alignment at H-akashiwo_Contig1136:375278..375523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1136.14.1 ID=mRNA_H-akashiwo_Contig1136.14.1|Name=mRNA_H-akashiwo_Contig1136.14.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=246bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:375278..375523+ (Heterosigma akashiwo CCMP452)
TGGGCGCAAGCATGGAGTCAAGTGAAGGAGGCAAAATGGCCCCACAACGT GCTGGACACACTGAACATCACTGATGTAGAATGGAATATCTTCCCCAATA TTCACATTATATTTCTGATTCTAGCTGTGCTTCCAGTAAGAACATCATCA GTAGAGAGGAGTGTGAGCCTGCTACGCCGGCTAAAAACTTGGTTGCGCAG CAGCATGGGGGAGGACCGCCTAAATGCACTGGCATTTATATTATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1136:375278..375523+

>mRNA_H-akashiwo_Contig1136.14.1 ID=mRNA_H-akashiwo_Contig1136.14.1|Name=mRNA_H-akashiwo_Contig1136.14.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=246bp|location=Sequence derived from alignment at H-akashiwo_Contig1136:375278..375523+ (Heterosigma akashiwo CCMP452)
TGGGCGCAAGCATGGAGTCAAGTGAAGGAGGCAAAATGGCCCCACAACGT
GCTGGACACACTGAACATCACTGATGTAGAATGGAATATCTTCCCCAATA
TTCACATTATATTTCTGATTCTAGCTGTGCTTCCAGTAAGAACATCATCA
GTAGAGAGGAGTGTGAGCCTGCTACGCCGGCTAAAAACTTGGTTGCGCAG
CAGCATGGGGGAGGACCGCCTAAATGCACTGGCATTTATATTATGA
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