mRNA_H-akashiwo_Contig1132.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1132.3.1
Unique NamemRNA_H-akashiwo_Contig1132.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A7S2USM1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USM1_9STRA)

HSP 1 Score: 198 bits (503), Expect = 9.760e-60
Identity = 96/165 (58.18%), Postives = 130/165 (78.79%), Query Frame = 2
Query:    5 IEGIVVRVTDGDTIRIRHKTVYSDGNFEG--KLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELH-GKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSGEYETPAEFKKRQRGS 490
            + G+VV+VTDGDTIR+RHK+  S G ++   KLAE+++ VR+ GVDTPETAKFG  GQP  +EAK FV+++L  G+KV V LL+KD+Y+R++  V YG WPF+K+LS+ELLKKG A IYRQ GAEY G+LPT+E LE +AK KK+G+W    E+PAE+K+RQ+ +
Sbjct:  125 LTGVVVKVTDGDTIRVRHKSWGSSGKWQKGWKLAEHSLAVRIAGVDTPETAKFGSTGQPLGKEAKQFVERQLPLGRKVSVQLLSKDQYERIVAKVSYGTWPFKKDLSEELLKKGLAVIYRQTGAEYAGKLPTYEKLESKAKSKKMGVWQEGLESPAEYKRRQKAA 289          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A2D4CEP5_PYTIN (TNase-like domain-containing protein (Fragment) n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEP5_PYTIN)

HSP 1 Score: 183 bits (464), Expect = 2.040e-54
Identity = 91/158 (57.59%), Postives = 118/158 (74.68%), Query Frame = 2
Query:   20 VRVTDGDTIRIRHKTVY-SDGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSG--EYETPAEFKKRQR 484
            V V+DGDT R RH  ++ S G F+GK++ENT+ +RL G+DTPETAKFG  GQPF +EAK ++ Q L G+K+ +TLL KD+Y R + MV YG+WPFR+N S+E+LK G A +YRQ GA YGGRL  FE LE EA++KK GIWS   + ET +E+K RQR
Sbjct:   85 VSVSDGDTFRARHVPLWRSTGGFKGKMSENTLQIRLAGIDTPETAKFGSPGQPFGDEAKAWLSQTLEGRKLTLTLLHKDQYARAVCMVHYGRWPFRRNASEEILKAGLANVYRQAGAVYGGRLEVFERLEAEAQQKKRGIWSQGKKLETASEYKARQR 242          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A1V9ZH21_9STRA (TNase-like domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZH21_9STRA)

HSP 1 Score: 177 bits (450), Expect = 9.800e-53
Identity = 92/164 (56.10%), Postives = 116/164 (70.73%), Query Frame = 2
Query:    2 TIEGIVVRVTDGDTIRIRHKT--VYSDGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWS--GEYETPAEFKKRQ 481
            TI G V+ VTDGDTIR+RH       DG+F+GKL E T+ +R+ GVD PETAKFG+ GQPF E+AK ++K EL  + V + LL KD+Y R + MV+YG W   KN S+ELLK G+A IYRQ GA YGG L  FEALE EA++ K+ IWS   + ETPAE+K R+
Sbjct:   48 TIRGKVITVTDGDTIRVRHVPWLANGDGDFKGKLTETTLQIRIAGVDAPETAKFGRTGQPFGEDAKQWLKDELFDQIVSIKLLMKDQYGRAVCMVYYGSWASPKNASEELLKAGYANIYRQSGAVYGGLLDKFEALEDEARKNKVKIWSLGDKRETPAEYKARK 211          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: HTP3_SAPPC (Endonuclease Htp3 n=2 Tax=Saprolegnia TaxID=4769 RepID=HTP3_SAPPC)

HSP 1 Score: 176 bits (445), Expect = 5.090e-52
Identity = 91/163 (55.83%), Postives = 117/163 (71.78%), Query Frame = 2
Query:    2 TIEGIVVRVTDGDTIRIRHKT--VYSDGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWS-GEYETPAEFKKRQ 481
            T+ G VV VTDGDTIR+RH       DG+F+GKL E T+ +R+ GVD PETAKFG+ GQPF EEAK ++K EL  + V   LL KD+Y R + +V+YG W    N+S+ELL+ G+A IYRQ GA YGG L TFEALE EA+EK++ IWS  + ETPA++K R+
Sbjct:   49 TLRGKVVSVTDGDTIRVRHVPWLANGDGDFKGKLTETTLQLRVAGVDCPETAKFGRTGQPFGEEAKAWLKGELQDQVVSFKLLMKDQYSRAVCLVYYGSWAAPMNVSEELLRHGYANIYRQSGAVYGGLLETFEALEAEAREKRVNIWSLDKRETPAQYKARK 211          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A1V9Z5Y9_9STRA (TNase-like domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z5Y9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 1.050e-51
Identity = 91/164 (55.49%), Postives = 118/164 (71.95%), Query Frame = 2
Query:    2 TIEGIVVRVTDGDTIRIRHKTVYS--DGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWS-GEYETPAEFKKRQR 484
            T++G VV VTDGDTIR+RH  +    +G+F+GKL E T+ +R+ GVD PETAKFG+ GQPF EEAK ++K ++  + V   LL KD+Y R + MV+YG W   +N+S+ELLK G+A IYRQ GA YGG L TFEALE  A E+KL IWS  + ETPA++K R R
Sbjct:   49 TLKGKVVAVTDGDTIRVRHMPLLGSGEGDFKGKLTETTMQLRIAGVDCPETAKFGRPGQPFGEEAKAWLKSQIQDQVVTFKLLMKDQYSRAVCMVYYGSWASPQNVSEELLKLGYANIYRQSGAVYGGLLETFEALEAAACEQKLNIWSQAKRETPAQYKARTR 212          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A836C7S0_9STRA (TNase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7S0_9STRA)

HSP 1 Score: 171 bits (432), Expect = 8.630e-49
Identity = 90/169 (53.25%), Postives = 118/169 (69.82%), Query Frame = 2
Query:    2 TIEGIVVRVTDGDTIRIRHKTVYS---DGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFR-KNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSGE-YETPAEFKKRQRGSS 493
            TI G V  VTDGDTIR+RH+   S    G+ +GKL+E  I VRL GVDTPETAKFGK GQP A+EA +FVK E+ GKKVK+ LL +D+YQR++G V Y   P R K+L+ E+L++G+  +Y  GGAE+ GRL    ALE +AK ++ G+W+ +  ETP  FK RQR  +
Sbjct:   88 TISGTVASVTDGDTIRVRHEPALSFLRRGSAKGKLSETAIAVRLYGVDTPETAKFGKPGQPMAKEATDFVKSEVLGKKVKIQLLRRDQYQRIVGSVQYSSGPLRSKDLTMEILRRGYGVVYTGGGAEHNGRLSQMRALETQAKARRRGMWAADAVETPGAFKARQRSGA 256          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A225WZK0_9STRA (TNase-like domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WZK0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.150e-48
Identity = 81/165 (49.09%), Postives = 117/165 (70.91%), Query Frame = 2
Query:    5 IEGIVVRVTDGDTIRIRHKTVY-SDGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSG--EYETPAEFKKRQRGS 490
            I+ + V  +DGDT R RH  ++   G+FEGKL+++T+ +RL G+DTPETAKFG  GQPF +EAK ++   L G+K+ +TLL KD+Y R + +V YG+WPFR++ S+E+LK G   +YRQ GA YGG+   +E LE+ AK+KK GIWS   + E+ +++K R R S
Sbjct:   85 IKAVAVNFSDGDTFRARHLPLFRGGGSFEGKLSDHTLQIRLAGIDTPETAKFGHPGQPFGDEAKKWLTSTLQGRKLTLTLLHKDQYARAVCLVQYGRWPFRRDTSEEILKVGLGQVYRQAGAVYGGKQENYEKLEETAKKKKKGIWSQGKKMESSSDYKARMRAS 249          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A6A3X1X4_9STRA (TNase-like domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X1X4_9STRA)

HSP 1 Score: 164 bits (415), Expect = 5.260e-48
Identity = 78/166 (46.99%), Postives = 117/166 (70.48%), Query Frame = 2
Query:    2 TIEGIVVRVTDGDTIRIRHKTVY-SDGNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSG--EYETPAEFKKRQRGS 490
            ++   ++   DGDT R RH  ++   G+F+GKL+++T+ +RL G+DTPETAKFG  GQPF ++AK ++   L GKK+ +TLL KD+Y R + MV YG+WPFR++ S+E+LK G   +YRQ GA YGG+   +E LE++A++KK GIWS   + E+ +++K R R S
Sbjct:    7 SLNTFIIAHFDGDTFRARHLPLFRGPGSFDGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDDAKKWLASTLEGKKLTLTLLHKDQYARAVCMVQYGRWPFRRDASEEILKVGLGQVYRQAGAVYGGKQEIYEGLEEKARKKKKGIWSQGKKMESSSDYKDRMRAS 172          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A6A4FC27_9STRA (TNase-like domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4FC27_9STRA)

HSP 1 Score: 166 bits (420), Expect = 9.480e-48
Identity = 80/165 (48.48%), Postives = 117/165 (70.91%), Query Frame = 2
Query:    5 IEGIVVRVTDGDTIRIRHKTVYSD-GNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSG--EYETPAEFKKRQRGS 490
            I+ + V  +DGDT R RH  +    G+F+GKL+++T+ +RL G+DTPETAKFG  GQPF ++AK ++   L GKK+ +TLL KD+Y R + MV YG+WPFR++ S+E+LK G   +YRQ GA YGG+   +E LE++A++KK GIWS   + E+ +++K R R S
Sbjct:   86 IKALAVNFSDGDTFRARHLPLLRGAGSFDGKLSDHTLQIRLAGIDTPETAKFGNPGQPFGDDAKKWLASTLEGKKLTLTLLHKDQYARAVCMVQYGRWPFRRDASEEILKVGLGQVYRQAGAVYGGKQEIYEGLEEKARKKKKGIWSQGKKMESSSDYKARMRAS 250          
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Match: A0A5D6YC33_9STRA (TNase-like domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YC33_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.270e-47
Identity = 83/163 (50.92%), Postives = 112/163 (68.71%), Query Frame = 2
Query:    5 IEGIVVRVTDGDTIRIRHKTVYSD-GNFEGKLAENTIVVRLPGVDTPETAKFGKEGQPFAEEAKNFVKQELHGKKVKVTLLAKDRYQRVLGMVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEKKLGIWSG--EYETPAEFKKRQR 484
            +  + V  +DGDT R RH  ++   G F G+ +E+T+ VRL  +DTPETAKFG  GQPF +EAK ++   L GK + +TLL KD+Y R + MV YG+WPFRKN S+E+LK G A +YRQ GA YGG+   FE LE +A++KK+GIWS    +E+ AE+K R R
Sbjct:   83 LHAVGVSYSDGDTFRARHVPLWRGAGAFSGRASEHTLQVRLAAIDTPETAKFGNSGQPFGDEAKRWLADALGGKNLTLTLLHKDQYSRAVCMVEYGRWPFRKNASEEILKAGLANVYRQAGAVYGGKQELFERLEAQAQKKKIGIWSQGKRFESSAEYKARLR 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1132.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2USM1_9STRA9.760e-6058.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4CEP5_PYTIN2.040e-5457.59TNase-like domain-containing protein (Fragment) n=... [more]
A0A1V9ZH21_9STRA9.800e-5356.10TNase-like domain-containing protein n=1 Tax=Thrau... [more]
HTP3_SAPPC5.090e-5255.83Endonuclease Htp3 n=2 Tax=Saprolegnia TaxID=4769 R... [more]
A0A1V9Z5Y9_9STRA1.050e-5155.49TNase-like domain-containing protein n=1 Tax=Achly... [more]
A0A836C7S0_9STRA8.630e-4953.25TNase-like domain-containing protein n=1 Tax=Tribo... [more]
A0A225WZK0_9STRA1.150e-4849.09TNase-like domain-containing protein n=1 Tax=Phyto... [more]
A0A6A3X1X4_9STRA5.260e-4846.99TNase-like domain-containing protein n=4 Tax=Phyto... [more]
A0A6A4FC27_9STRA9.480e-4848.48TNase-like domain-containing protein n=1 Tax=Phyto... [more]
A0A5D6YC33_9STRA1.270e-4750.92TNase-like domain-containing protein n=1 Tax=Pythi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1132contigH-akashiwo_Contig1132:108320..109305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000020969
PFAMsDEAD,Helicase_C
Model size648
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.28e-19
EggNOG OGsCOG0513@1|root,KOG0338@2759|Eukaryota,1MDDI@121069|Pythiales
DescriptionDEAD DEAH box RNA helicase. Source PGD
Cds size222
COG categoryA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.69683-UTR-H-akashiwo_Contig1132:108319..1084621681387092.69683-UTR-H-akashiwo_Contig1132:108319..108462Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1132 108320..108462 +
1681387092.708919-UTR-H-akashiwo_Contig1132:108657..1087881681387092.708919-UTR-H-akashiwo_Contig1132:108657..108788Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1132 108658..108788 +
1681387092.731462-UTR-H-akashiwo_Contig1132:109153..1093051681387092.731462-UTR-H-akashiwo_Contig1132:109153..109305Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1132 109154..109305 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387092.7166467-CDS-H-akashiwo_Contig1132:108788..1088491681387092.7166467-CDS-H-akashiwo_Contig1132:108788..108849Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1132 108789..108849 +
1681387092.724059-CDS-H-akashiwo_Contig1132:108992..1091531681387092.724059-CDS-H-akashiwo_Contig1132:108992..109153Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1132 108993..109153 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1132.3.1prot_H-akashiwo_Contig1132.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1132 108789..109153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1132.3.1

>prot_H-akashiwo_Contig1132.3.1 ID=prot_H-akashiwo_Contig1132.3.1|Name=mRNA_H-akashiwo_Contig1132.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=74bp
MVWYGKWPFRKNLSDELLKKGFATIYRQGGAEYGGRLPTFEALEQEAKEK
KLGIWSGEYETPAEFKKRQRGSS*
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mRNA from alignment at H-akashiwo_Contig1132:108320..109305+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1132.3.1 ID=mRNA_H-akashiwo_Contig1132.3.1|Name=mRNA_H-akashiwo_Contig1132.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=986bp|location=Sequence derived from alignment at H-akashiwo_Contig1132:108320..109305+ (Heterosigma akashiwo CCMP452)
AACAATTGAAGGTATTGTTGTTAGGGTTACTGATGGTGATACTATACGAA TCCGGCATAAGACCGTTTATTCAGACGGAAACTTCGAAGGAAAACTCGCA GAAAACACAATAGTTGTTCGTCTGCCTGGGGTTGATACACCAGGTAAAAC CTTTATCTGTGCAGACTTGGCACCCATTGCATTGACATTGATCATAACAA CCCCCCACTCCCCCAGCCCCTCCCCACTATGTGTTGTTACTCCATCGTAA TTTGTCATTATCATTATGATGGAAAGTATAGGGTCATTTTTTATATCATC CTCACCATGATGAAAGTTATTTTATTGCAACACTCCAGAAACCGCTAAGT TCGGGAAGGAAGGGCAGCCGTTTGCAGAGGAAGCGAAAAATTTTGTGAAG CAGGAACTCCATGGGAAGAAAGTGAAAGTGACTCTGCTTGCTAAAGATAG ATACCAGAGAGTTCTTGGCATGGTGTGGTACGGAAAATGGCCGTTCCGGA AGAACTTATCGGATGAGCTGTTGAAGAAAGGTGCAACTTTTCATATAATA ATGTAACACTACATACAAAATGCATTGTTACACATGACTGAGAAACCTTT TCAACTAACGAATGCGGAATAACTTAATCAATCTTGTAAATCTGTGCATG TTATTGGTCAATAATTTCCATAGGTTTTGCAACCATTTATCGGCAAGGAG GTGCTGAGTATGGGGGCCGGCTCCCTACTTTTGAGGCTCTGGAGCAAGAG GCCAAAGAAAAAAAGTTGGGAATATGGTCTGGGGAATATGAAACTCCAGC AGAGTTTAAGAAGAGGCAGCGAGGCTCGTCCTGAAGAATATAAACTCAAT AGGTGCTAAAATGAGTACACACACATGATTGGGTATGTAGTAGACCCTTT AGGGAGGGGCTGGCTTTTTTCCTGGTATAGGTCGACCAAACACATACTTC TGAAAGGCGAGGCTGAAAAACTATTTAAAATACATA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1132:108320..109305+

>mRNA_H-akashiwo_Contig1132.3.1 ID=mRNA_H-akashiwo_Contig1132.3.1|Name=mRNA_H-akashiwo_Contig1132.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=222bp|location=Sequence derived from alignment at H-akashiwo_Contig1132:108320..109305+ (Heterosigma akashiwo CCMP452)
ATGGTGTGGTACGGAAAATGGCCGTTCCGGAAGAACTTATCGGATGAGCT
GTTGAAGAAAGGTTTTGCAACCATTTATCGGCAAGGAGGTGCTGAGTATG
GGGGCCGGCTCCCTACTTTTGAGGCTCTGGAGCAAGAGGCCAAAGAAAAA
AAGTTGGGAATATGGTCTGGGGAATATGAAACTCCAGCAGAGTTTAAGAA
GAGGCAGCGAGGCTCGTCCTGA
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