mRNA_H-akashiwo_Contig112.26.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig112.26.1
Unique NamemRNA_H-akashiwo_Contig112.26.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig112.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig112contigH-akashiwo_Contig112:629508..636832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size446
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.6709018-UTR-H-akashiwo_Contig112:629507..6295631681387087.6709018-UTR-H-akashiwo_Contig112:629507..629563Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 629508..629563 +
1681387087.710306-UTR-H-akashiwo_Contig112:636685..6368321681387087.710306-UTR-H-akashiwo_Contig112:636685..636832Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig112 636686..636832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387087.6869137-CDS-H-akashiwo_Contig112:629563..6296401681387087.6869137-CDS-H-akashiwo_Contig112:629563..629640Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 629564..629640 +
1681387087.7000878-CDS-H-akashiwo_Contig112:636519..6366851681387087.7000878-CDS-H-akashiwo_Contig112:636519..636685Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig112 636520..636685 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig112.26.1prot_H-akashiwo_Contig112.26.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig112 629564..636685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig112.26.1

>prot_H-akashiwo_Contig112.26.1 ID=prot_H-akashiwo_Contig112.26.1|Name=mRNA_H-akashiwo_Contig112.26.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=81bp
MEKVLESQHCCLMMSWQKITTPLQCRQRCDQDFAFMYAKQMENTRRRKEE
LMVQLASSYFSYTREGRRKSSYYYFCCVRF*
back to top

mRNA from alignment at H-akashiwo_Contig112:629508..636832+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig112.26.1 ID=mRNA_H-akashiwo_Contig112.26.1|Name=mRNA_H-akashiwo_Contig112.26.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7325bp|location=Sequence derived from alignment at H-akashiwo_Contig112:629508..636832+ (Heterosigma akashiwo CCMP452)
AAGTGTTGTAAGTCCGGAGATGGTGGAGGACAGAGTGGTGAGTAGTAAGA
ACAGTAATGGAAAAGGTGCTGGAAAGTCAACACTGTTGTCTGATGATGAG
CTGGCAGAAGATCACAACCCCGTTGCAATGCAGGTGAGCCTTTTTTTTTT
TTTTACTTAATAAGCCATTCACGTGGTGCATAGTCGAACATCAGAAAGAA
AATGTTGGGATTGTGTGTTGAAATAATTATGGTTGCCACAATCGACTCTT
TAACTTTGAAAAACAAAGTAAAACTGATGAACATCTTGAGTCTAAATATT
CCGTCTACATACTGATATTCTTCTTGATGAGTGATGACTCCCAAACTTGA
ACAACAGGATCGAAATTTTATATTCACAAGCCAGTAATCTTCTGAACAAC
ATATTTTTTAATATATAAGTATAGTATCTGTTCAGGTGGGAGCAACCTAG
GTCTAAAGGTTTGGACTTTGATTAGCAGGTCAGCCTTAGTAGTATGGCCA
CGGCTGGAATATCTTAGAAGAGGCAAAGCCTCCAGCCAGTAGTGTTGTTG
TTGTGTTAGTGGAACCATGAATTTTGATACATGGATATGTAAAAAATCAA
TTTCAACTTCAACTTCAAGTGACTACCCATTTTTTGGACGCGATAATGCG
GGACTACTCATTTTGAAAGTGGTGATCATGTTGGGCAAAAGTTGTCTAAT
GTACATGAAGAACTCACTATCATCAGAAGTGGGAAGTAGCAGCAGAAAAT
CAGTACATAGCCAGTAGAGCATCAGGTGAAATCACCTCATTGCAAAGAAT
CAGCATAGGTGACATCGGCATTGAAATCATCTTAGCGACATAAGCCCTTA
GAATTAGGGGTAGGTGACCACGGGTTGAAATACCTCTGTTTTTTGCAAAC
GCTTCCAGCATGAACGTTTGTTCAGATAAACCTTGTTGGGCAATCGTAGC
AACCAGAAGTGAGAGAAGCAGAAACATCAAGAAGAACTCTGAATGGCATG
CGTGAAGAGAAACCAGTTTTTTGGTCAGGATCTTCGAAGCAACGTGAGTG
AGGCAGTGTCAAGTCACATTTTGAAACAAAAATAAGCAACGATGATCGAT
TTTCCCAGCAGCAGGGAACAGCTATATTGACAGCAATAAATCAGGTATCA
CATAGTACTTGTGTCTAAAGTCCGCGCATCATAGATATCTTCGTTGAAAG
TAACCAGTAAGGAAAGCTATGGTTGTCGAAGAGGCATGCGGCCACTCACA
AGGTATCACGCAGCGGAGGTCAATGACGGACAAAGGCTGAGGAGAATGGT
CATAGAGTACCAACAAAGCAGCAAGTGCCCTGCTTCTACTGCTAGCACAA
ACACAACGTGTGGTGCTCCCATCCCCACCTGCAATATATCACGATTTTTC
TGTGTTGTATGAGGATGGCACTCACCTCTCCTCCAGTGTGGCCTTTCTGA
TACTTTCCACACTAATAATAAGATGGCTGGTTTAACAAGCTTCAGGTTCA
AAGGGGTGCTAGTACGTTGGGGTTAAAAGCCCATTGAAGCTTGCTTTGTT
TGGTATGCATTTTCTTCCAGTCAACTTACCACAAAAAAAAAAATTAAAAA
TAATAATAATATCAATGACCTGATCCTTCAGGAAGGAGAGAGAAGGGTGA
AGGCTCGCCAGAAATGGGTGAGGAGGTTTGGCAAGAAGGTGGGTGATGGC
AAGGGTGGGAGGGTTTCTTGGAACCAAAGGCCACGACTCAGGAGGAGTGA
CAGACTGATGAAGAAGCGTCGGATCTCGCATCCGGACGAGGAAGACCCGG
GCGCAATCTGCGCGCTCCTCGGGGCGATGAAGTTGAACGTCTGGGGTGGC
AAGGAAGACTATTCCGTCAGTCTGGAACAAGAAGAGGAAAAGTCGGGTGG
CAAGGGCCGGGCAAACAGGGCAAGGAAGAGGAGGGTGTGAATCTCGTGAT
GTATATTTGTATTTCCATTCTTTTTCTTTTTTCTTCTGTTTTGTACTGTT
GGCAGCAGGGATGGAAGGAGGAGAAGAAGGATAGAGGAGAGGTGTAACCA
TTACCGTTTTTTGTCTCATCGGCTATCGGTGTTGTTGTGCTGGCTAGACC
ACCTTCATCATTACCTTGATGGGACCTAGTTGGACTTTGGCCAACTTGGT
GACTCTGTGAAGAAGGCATGACTTCATGTCGAAACGTCGGGAGCTGGAGA
GGCGTATCATTTGCTAGAAGATCAATTAAATTTTCCGTACCATCAGTGAT
CACTTTCATTTCAATACATAATAACAATATTAAAACCTTCATCGAAGTAT
AGTCAAATTGTATTGCAGCACTGCCATTCTATAGCATGCATTAGCATTGA
GCCATTTTTTATCGCTCACAACACGTAGTCCTTTCTTTGAAATCTGTTGA
GCTTCCCAATTTTGCTTTGTACTGCAGCTCCATTTCAATTTTGTTACAGC
ggggggggggGGGGGATGACCGTTTTTCATTGATGCCAACAGGGAGCAAT
CTCACTAAGTGAGACTGTGTAACTTTGAAAGGGCTAGTCGTCTACTATCG
GAGTTTATGGTTCCGGCTGTTTCTGGGTGATTATATTCCCTTCCACGCGA
GAATGCTTCAATATCCTATCATAATGTATTGCATGCTTTTGGTTTCAGGG
TATGGATGATGCAAGAGGATAGATAATATTTTAGTTTCTTTCTGACTGGG
CATCCACTACGTGAAGCCGCTTGGCTAACAACCAAGCGGTAACGAGTTCG
ATTCCCGCTAGTAGTGTTTCAGATGCGTCGTTGGGCTCATTCTTGGGCGT
GAATGGCTTCGCTAAATAAACACTTTCTTTCTGGTTATCTAGATATCGCC
CCGTCGTTAACTATCTGTGTTCAAATAGGCGAATTTGGAACGAGAATCCG
TCGACTTCTCTACACAGCTTTCAATAAAATTCGTTTTATAATGTAATGTT
TTTTTGTAATTATATTTAAATCCTACAATAGCCATTTACTGTAACTTGTA
TACTTAGTCCGGCACAAAATTGAGCAACTGTTCCGCAGTTTTAGCTTGTT
CTTAACTGTGAGACGACTGATTTTTATTTCGTTCGATATCGAACGATGGA
GCTATCGCGAAACAATCCAAATATTCATCCGTGATTGGAGTTTTCCGAAA
CCCGGAGCAATAATTAGCTGATTGCGGCGTTTCCCGTTCCAATGAGATAA
GACTCGATTTCATCGTTCGATATCGAACGATCCGAGCAAAGCCAGGAGTG
TCGATGAGGTCTGAGTTGTGGTGACGCCTGTTCTTTAGGTATATTTTCCT
ACTCAAGTCTATTCCCATCAACTCATTGTGTATTTTATCCAATGCGAACC
GTGGCGGAGAGGAGGTAGAAGAGGCCGCCCACCATTACTCAATTATCATT
GGCTGGCCATGATTTCCTTTTAAAAATTAGGATTCGACCGATCTTTCTCG
TATTGATGTTCTTAGGATGTTTCAATCGATAAACTTGATTGGAGAATTTC
GGCGTTCGCCTGAATTCAGTACGGGAGTTTTTAAATAACAGACAAAATCT
CAGACGAACGAAGCGTTCAGCCGAGTCCCGCGTCCGACAGGTAGGGAGTT
TAACCCTTTTAGACAAAGATTTTTTTGGGCAGGCTAAATTGGTATATACC
AATTTAGCTTTGCAAACGAGATTGGTCAAAGTGTAACCGTCGATGTGCGT
GATGATCGGGATTGGTATTTCAATTTCCGTTACGCTCATTCGGAGTAACT
CCGAGGCTAAATTGGTATATACCAATTTAGCTCTCAATCGTGTGACTGAA
GTGACCCTTTCAGTCCTATTTCCTGTGGTAGGAAGTAGTACCAATCCTAC
TCTTCTCCTAGGATCAATGTGGACCCATTACTTGCGAAAATGGAATTAAA
TTTCTCCTCCTCCTCTTCTTCCGGAAAAAACGTACGTGTGATGATGTCGT
TGAACCAATCAAAATCAAACGTTTGAAAAAAGATCACCTCTCTGATGGTT
TGGACAAAATTCATACAAAGCAAAACATTTTACCATTCCCATCTGAAGCC
AAGTAAAAATATGCATGGATAACTTCCCAAAGTCCCAAAAGTCAAAAATA
TGCTTCATTTTCACTAGTATACACAGCCATTGAAACAGTACACCGCTGCA
CTCAGAATAAACAGGTAAGGGAGTGGAGCTATCAAGGCGGTGAAAGCATC
CAAAACAATCAAACAATTATAGAAGTATGTCCGATAAAATAATTATGTGT
CGGATGACGATTGGCTTTTTCATTGGGTTCTCGAATTCTATTCGCCTGTT
TATCTTGTTTTAAAAGTTTGAAATGATTGCGATTTTCCGTATTTTCATTG
GAGAATCTAGTTTTGTAACCGTCGGTTGAGCTAAATTGGTATATACCAAT
TTAGCTTTTTTTCTTGTCTAAAAGGGTTAAAAACTCACCCTGACGAACGC
AAACCGACCCACCAACCCCACGATCGTTCCCGAACGTTCTTTGGGGCTAT
AGACTGCCCCGATTACCTAGAAGGAAAATGTGCCTTTGGCGAGCAATGTA
TGAAGGGACACCATGATGAGTCGAAGTTAGCTGTGCAGACTCCTCCTCAG
GAAATGCACTCTCAACATTTTGAATCTGACGCTGTGCTGGATAATTCTGT
GGAGCATTTTGTACACATTTGGATGAGTTAGAGGCCCGCTCTAGCCCTAG
TGCCAAGCGTCGTCTCTCCATGCACTCCAGTGAGGGTGCAGTTTCAGAGG
GGGGGGATTCTCTGGATTCCCTCTCTCTTCAAGACTTCCAGGGCAGTGCC
AGCGACGAGGACAAGGAGGAGGGCGCAGCTTCTGGGGAGGAGGAGAAGGA
CCCCACCACCAGAGATATTGTGATCGCCATCATGAAGATGAATGCAGAAT
TGAATGCAAAGCTTGAGAGGGATACGGCAGAATTGAGAAACAAATGGTTA
CCACCAAGATAGGAGGGAAATGACCAAGGCAGAATACAAATGAATACAAG
TCAACAATCAAATATAATAAGTGAGATCAATCAGAAGCAGCAGTGGAGAC
ACAGGGTTTTGTTTGCAGGAACACAGACGTAGATTTGTTTTTAGATGGGT
GTTGTAGGGCCAATTTTTGCTCTTGGCTGAATTCTTGGGTAAAAATGGCT
TTGCGTCCGTCCGTTGCCTAAAAGACTATAATTTAAAAACTCTTGTAGTA
ACGGATCTCGGACACTACCGACACCAGCAGCTAGTAGGACTATCCGAAAT
TCTTATCTTGTTTTGAGGAATACACAATAAATGCTTAGATTTTTTGGAAT
TTTGATTTGGCCAAATTCTTGGGATAATTTCCATGAAAGTGGTCCATTCC
CGCTAGAAACGTTCAACCAATTTGTGCTAGATTTCCCCTCTGCACTTGTA
ACTTTTCATTCCCATATATTGTTCCTGATTGATAAGGAGCATACGGACGC
TAAAAATTCTAGAATTTCGTATTAAAAGTCTAAACTTAAAACAAGAAATT
ATATTCTTAGCAGCCCATCACCCACTCGAAGGCTTGCCATTGTAAGCCAT
TTGATCGGGGGTACGAATGGAAGTATAATCAATCTTTAAGTATTCTAGGT
TGATCATACTACATAATGGTGGCCTAATAAAAAAAGAACGGGCCGATTTG
GCCCGTTTCATCCAACCAAACTTCAGTGCGAGCATTTGGCTCAACATTGA
GAATATTGAGAGTGTATGATACTGGCCTTCGAGGACAAATGAGCCAGCAA
AACTCAAACCAGTATTAATGAACATACCCTAGATCAATATATTCTTTGAA
TTAGCGAACTTCGTTTCGATGTACCCGAGCATTTCCCATCTATACGGCGG
CTATTATACAGTTGCTTTTTTTTTGCCTGCAACGGGCGGTGTGAAACCTT
GAAACCCACCTTCTCCTGCTTCTTGCTGATCGTGTTCGGCAGTCGGGACA
ATTACAGCAGAGAATGATGATCGGCACTTTCCCGAGGTTTATATCTGATT
GGTGATCTTGACTGTAGTGCTGTGATCCCGAATCAGCATATATTCGATTG
GCCAAACCGGAATTTTTTGTTCATCGTTCGATATCGAACGATGAAAAAAA
ATCAGTCGCCTTACGGTTAAAATGAGAACGAGAACGATTGAGAGATCAGC
GGGGGAATGTCGGCGTGAGACGAGAATGAACACGGACCAGGCAGCCCTAG
ACCCGGAAATGCGCCACGCCTGACGGAACTATCCCGCAAGTATCGACCGG
TGCGATCTCGGCTAACAGCCGCGAAAGCAACACCGCCTGTCAAAGATATG
GGGACGAACCGGCACCATGAAGAGCATGAAGCATGGTGTGTACTACGTAG
ACAAAAAAAAATGTTGTATTGTCCCTTTTTAGCCTTCTTCTAGTTGTCTG
ATTTTGAGACACCCCATGGAGTCCGTTCGGCCTGTGTCAGACCTTCGTAA
ATGTCCGATGCATTTTTTCGGTGAATTGACCTTGGGTCTGTGGCAATGTC
CGATGAGGGTTGCACAACTCTTCGACTTCAATTAGTTGCTCAATTTTGTG
TCGGACTAAGTATTTAATTATTCTGATTGTTTCATTCGGCTTTTTTTCAT
TTTGATGATTTGAGACCGACTTTCAAAATCTGAATGCAGAAATGGTGCTT
CGAGCGTGAACTTCTATGTCCTCTCAAAATATATCGAAATCTTTTCAAGA
TGACATCTACGCAATTAAAATAGGACCCAAGGAAACACGATGTTTTAATT
TTAACAAATTTTGGTGACATCCATTTCAACGATTTGACATTTTTGTAAAA
AAAATCTCTCAGCTGGCATTGATGTCAAGCCATGATGTCATCCGATGTCA
CCAACAGGGTCAGATGACATCAAGGCAATAATATTATTGTGTTGCAGCTG
TAACTCTTCATCTTTTGATGGCAGCATGTGTCACTTTTTCATTAATTTAT
TCTTGTATCATTGTTTCTTTTTTCTGTTTATATTTGTTATGTACTACTGT
CCCTCTCCCCAGGCAACGCTGTGATCAAGATTTTGCCTTCATGTATGCGA
AACAAATGGAGAACACCAGGAGAAGAAAAGAAGAGCTGATGGTTCAATTA
GCATCATCATACTTCTCCTATACAAGGGAAGGACGGAGAAAGTCTTCTTA
TTATTATTTTTGTTGTGTGCGTTTTTAGTAAAGATATTGTAGTAGTATTA
TATACATCATTCATTTTATCAACGCACACACACAGCAGTAGTACAACAAC
ATGCATCATTACCAGAAGAAGTTGTGGGGTGTTCGGCCCCACTCCTCCTG
GTCCTTCCAGGGGGGCCCTCCAGGG
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig112:629508..636832+

>mRNA_H-akashiwo_Contig112.26.1 ID=mRNA_H-akashiwo_Contig112.26.1|Name=mRNA_H-akashiwo_Contig112.26.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=243bp|location=Sequence derived from alignment at H-akashiwo_Contig112:629508..636832+ (Heterosigma akashiwo CCMP452)
ATGGAAAAGGTGCTGGAAAGTCAACACTGTTGTCTGATGATGAGCTGGCA
GAAGATCACAACCCCGTTGCAATGCAGGCAACGCTGTGATCAAGATTTTG
CCTTCATGTATGCGAAACAAATGGAGAACACCAGGAGAAGAAAAGAAGAG
CTGATGGTTCAATTAGCATCATCATACTTCTCCTATACAAGGGAAGGACG
GAGAAAGTCTTCTTATTATTATTTTTGTTGTGTGCGTTTTTAG
back to top