mRNA_H-akashiwo_Contig111.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig111.21.1
Unique NamemRNA_H-akashiwo_Contig111.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig111.21.1 vs. uniprot
Match: A0A7S4DA45_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DA45_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 3.090e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 FSDYSSSAHSSAQSSKFILAQNFRTTTVEKGKLAVMRLLGKSADLDASAMVE 156
            FSDYSSSAHSSAQSSKFILAQNFRTTTVEKGKLAVMRLLGKSADLDASAMVE
Sbjct:  436 FSDYSSSAHSSAQSSKFILAQNFRTTTVEKGKLAVMRLLGKSADLDASAMVE 487
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig111.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S4DA45_HETAK3.090e-22100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig111contigH-akashiwo_Contig111:1330890..1332406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size157
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387084.7721863-CDS-H-akashiwo_Contig111:1330889..13310071681387084.7721863-CDS-H-akashiwo_Contig111:1330889..1331007Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 1330890..1331007 +
1681387084.7805696-CDS-H-akashiwo_Contig111:1332368..13324061681387084.7805696-CDS-H-akashiwo_Contig111:1332368..1332406Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig111 1332369..1332406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig111.21.1prot_H-akashiwo_Contig111.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig111 1330890..1332406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig111.21.1

>prot_H-akashiwo_Contig111.21.1 ID=prot_H-akashiwo_Contig111.21.1|Name=mRNA_H-akashiwo_Contig111.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
FSDYSSSAHSSAQSSKFILAQNFRTTTVEKGKLAVMRLLGKSADLDASAM
VE
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mRNA from alignment at H-akashiwo_Contig111:1330890..1332406+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig111.21.1 ID=mRNA_H-akashiwo_Contig111.21.1|Name=mRNA_H-akashiwo_Contig111.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1517bp|location=Sequence derived from alignment at H-akashiwo_Contig111:1330890..1332406+ (Heterosigma akashiwo CCMP452)
TTCAGCGATTACTCGTCCAGTGCCCACTCGAGCGCCCAATCGAGTAAATT
CATCCTTGCTCAAAATTTTAGAACTACCACCGTGGAAAAGGGGAAGCTTG
CGGTCATGAGGCTGTTGGGTGAGCCCCCCTTTTTGGCCGTTTGTCAAAAA
AGAAAATGGAATATATTATATAATAGTAACATTGTTATTATATAATTCAT
TGATACATTAATAATGCATTTACATGCTGTTTTTGTATTTTGTGATGATG
TATTCTATTTTATTATATATAGATATGGTGTACTGGGTCTGTCTGTTGAA
ATATGTGTCAAAAAAAAACAAGCCCACACAATGTTTCTAAAGTTAATTCT
GATCTCTATCTGATCTCTCGAGAACATTGATTGTGTATTGGATTCTTAAA
AAAAAAAGAACTGGATGAGAGATTTTGAAGGTTAAAAGATCCTGATCTGA
AGTCAAAGTTGTAGCAAACTATAGTTTGATGGTTCTGTGTAGAATTCTGA
CATCTGGGGGCTTATAAACCAACTGCTATTTTTTCTAGAAATGATTGCCG
GAGGTCTGGATATGATCTTCTCAAGCAAATGATAGCCTCTCTAGCCCCGA
TGTTTCAACATGGAGCCATGCCTTCTTCATAGAGTCGCCAGGTTGGCCCC
ATCCTCCATTTCAGCCCTATCAGAGGTATAATGAAGGCGGTCCAGCCCAC
ACAGCAACACCAAGCAGCTGGCAAACACACAAAAACGGCACAGGTGATTT
TCAACCCCCGGTTCTTAGTTTTCCTCCATTGCCAAAAGCGCAAAACAGAA
GAAAGAAAAGAACACTATTGCCCATCATTCATCTTCTCCTTTTCTTGGTT
GTTGTGGCCCGTCTCTTCCTTTTCAAATCCTTCTCTTTTCTCTTTGTGTC
CAAGACTAACAATATTAACCCACCTCAGTGCCCCAGGTATTTTTCAGCGA
CTCCTCTCCCATGCGCACAAAGAAGACCCTCGCCTGGCTCTTCATCCTCA
GTGTGCAAGTACCGCTGCTTCTTCATCGCCCCCGTGCTTCTCCTTGGCCA
TGCTGGCCCCGGGATCCCCTCACACCTCCACCATTATCTCCACGCTCCTT
GTCAAAATTAGATGTGTAATTATTGCACAGGATTTAATCGCAGGTCAGCA
ACTTCCAATCTTACACATGTTTGTGGGTGATGCAGGCAAAGTGGGTTGAA
AAGGCACGAGAAGCTTATTTTGCGCAGACGCATTGACGTCCAATGACAGC
ATATTTGCAAAAACACTTTCAAAACCGTCACGCACACAGAAAAATCATCG
CTCTCTGGAATTGTTGCTGAGGTAGCGCACGGCCAAGCCAGCGCCAGCAG
AGTTGTGTTCTTTTAGGAGGCGGCAGCACGCGGATGGCGGCGCTCTCGCG
TTGGCGGGCCCGCCGCCCCCCCTCCCCCGCCCCGGTCACCCCTTCCCCCC
ACACACACACCCCATCGCCGGGGCCCCAGGCAAGTCGGCGGATCTGGACG
CCAGCGCGATGGTCGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig111:1330890..1332406+

>mRNA_H-akashiwo_Contig111.21.1 ID=mRNA_H-akashiwo_Contig111.21.1|Name=mRNA_H-akashiwo_Contig111.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig111:1330890..1332406+ (Heterosigma akashiwo CCMP452)
TTCAGCGATTACTCGTCCAGTGCCCACTCGAGCGCCCAATCGAGTAAATT
CATCCTTGCTCAAAATTTTAGAACTACCACCGTGGAAAAGGGGAAGCTTG
CGGTCATGAGGCTGTTGGGCAAGTCGGCGGATCTGGACGCCAGCGCGATG
GTCGAG
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