mRNA_H-akashiwo_Contig11.78.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.78.1
Unique NamemRNA_H-akashiwo_Contig11.78.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig11.78.1 vs. uniprot
Match: A0A6V1R366_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R366_HETAK)

HSP 1 Score: 119 bits (299), Expect = 5.590e-32
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 1 
Query:    1 MQKPTVPDVERNIQVWVRFVETPGYEPPQGKVFIERDPFELVAKDEKGFGGFWQ 162
            MQKPTVPDVERNIQVWVRFVETPGYEPPQGKVFIERDPFELVAKDEKGFGGFWQ
Sbjct:   85 MQKPTVPDVERNIQVWVRFVETPGYEPPQGKVFIERDPFELVAKDEKGFGGFWQ 138
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BLAST of mRNA_H-akashiwo_Contig11.78.1 vs. uniprot
Match: W7TCQ3_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TCQ3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.020e-8
Identity = 22/33 (66.67%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   49 VRFVETPGYEPPQGKVFIERDPFELVAKDEKGF 147
            +RFV  PGYEPPQG++F+ERDP  L+  DEKGF
Sbjct:   87 IRFVTEPGYEPPQGRIFVERDPLALIDTDEKGF 119
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6V1R366_HETAK5.590e-32100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TCQ3_9STRA3.020e-866.67Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:3363280..3363792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387079.6709402-CDS-H-akashiwo_Contig11:3363279..33633991681387079.6709402-CDS-H-akashiwo_Contig11:3363279..3363399Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3363280..3363399 -
1681387079.6838193-CDS-H-akashiwo_Contig11:3363750..33637921681387079.6838193-CDS-H-akashiwo_Contig11:3363750..3363792Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 3363751..3363792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.78.1prot_H-akashiwo_Contig11.78.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 3363280..3363792 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.78.1

>prot_H-akashiwo_Contig11.78.1 ID=prot_H-akashiwo_Contig11.78.1|Name=mRNA_H-akashiwo_Contig11.78.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=54bp
MQKPTVPDVERNIQVWVRFVETPGYEPPQGKVFIERDPFELVAKDEKGFG
GFWQ
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mRNA from alignment at H-akashiwo_Contig11:3363280..3363792-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.78.1 ID=mRNA_H-akashiwo_Contig11.78.1|Name=mRNA_H-akashiwo_Contig11.78.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=513bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3363280..3363792- (Heterosigma akashiwo CCMP452)
ATGCAAAAGCCGACGGTCCCAGACGTAGAAAGAAATATTCAGGTATATTT
GCATGATGCTCCCGACATACAATGCTATATATGGACAATCATAGCTGCCA
AGTTTTATTTGATAAGTTGTCTAGACATGCGATGCATCAACTTTTCGTGA
AGCATTTAATGATTAGATTCTATGGAACCGTACTTACTACCAAAAGCTTT
TTTTGCTTATCAATGTGAATGCACCACCAGAAGTATACTGTGATTGATGA
TGGCAAACAACTTGGTCATCTCTACTACCTCTAGCCCAAAGCCTTTTTTG
CTGATCAATGTGAATGACCAGAAGAATTGTGATTGATGATGGCAAACAAC
TTGGCCATCATCTCTACTACCTCTACCCCCCTCTGCACTTCAGGTGTGGG
TCCGTTTTGTTGAGACTCCAGGCTATGAGCCCCCACAGGGCAAAGTGTTT
ATTGAGAGAGACCCTTTTGAGCTTGTGGCCAAAGACGAGAAGGGCTTCGG
GGGGTTCTGGCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:3363280..3363792-

>mRNA_H-akashiwo_Contig11.78.1 ID=mRNA_H-akashiwo_Contig11.78.1|Name=mRNA_H-akashiwo_Contig11.78.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=162bp|location=Sequence derived from alignment at H-akashiwo_Contig11:3363280..3363792- (Heterosigma akashiwo CCMP452)
ATGCAAAAGCCGACGGTCCCAGACGTAGAAAGAAATATTCAGGTGTGGGT
CCGTTTTGTTGAGACTCCAGGCTATGAGCCCCCACAGGGCAAAGTGTTTA
TTGAGAGAGACCCTTTTGAGCTTGTGGCCAAAGACGAGAAGGGCTTCGGG
GGGTTCTGGCAA
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