mRNA_H-akashiwo_Contig11.107.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig11.107.1
Unique NamemRNA_H-akashiwo_Contig11.107.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig11.107.1 vs. uniprot
Match: A0A6S9K1T7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9K1T7_HETAK)

HSP 1 Score: 536 bits (1380), Expect = 6.320e-190
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1 
Query:  115 MNHPKGTEHSKLLAAPCSLAVHAIQHEPEKQNAPCSDFDLEKANSLRRNENVINQGVCVGPFKITWLTEDFFLRICRYEIANAVSMIVPSLVSYILLEIYAADTNRFAKAICLAPVIHFPFSFCYHGYMALPNFKEDWALLYHRLDSAFIHAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVTMYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQALMVASALGLLPSI 906
            MNHPKGTEHSKLLAAPCSLAVHAIQHEPEKQNAPCSDFDLEKANSLRRNENVINQGVCVGPFKITWLTEDFFLRICRYEIANAVSMIVPSLVSYILLEIYAADTNRFAKAICLAPVIHFPFSFCYHGYMALPNFKEDWALLYHRLDSAFIHAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVTMYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQALMVASALGLLPSI
Sbjct:    1 MNHPKGTEHSKLLAAPCSLAVHAIQHEPEKQNAPCSDFDLEKANSLRRNENVINQGVCVGPFKITWLTEDFFLRICRYEIANAVSMIVPSLVSYILLEIYAADTNRFAKAICLAPVIHFPFSFCYHGYMALPNFKEDWALLYHRLDSAFIHAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVTMYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQALMVASALGLLPSI 264
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BLAST of mRNA_H-akashiwo_Contig11.107.1 vs. uniprot
Match: A0A7S3UW79_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW79_HETAK)

HSP 1 Score: 256 bits (653), Expect = 3.120e-81
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 1 
Query:  517 KEDWALLYHRLDSAFIHAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVTMYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQALMVASALGLLPSI 906
            +EDWALLYHRLDSAFIHAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVTMYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQALMVASALGLLPSI
Sbjct:   30 QEDWALLYHRLDSAFIHAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVTMYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQALMVASALGLLPSI 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig11.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6S9K1T7_HETAK6.320e-190100.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3UW79_HETAK3.120e-8199.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig11contigH-akashiwo_Contig11:4605872..4610593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1266
Hectar predicted targeting categoryother localisation
Exons8
Cds size795
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig11.107.1prot_H-akashiwo_Contig11.107.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig11 4605986..4610236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.780491-UTR-H-akashiwo_Contig11:4605871..46059851681387076.780491-UTR-H-akashiwo_Contig11:4605871..4605985Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4605872..4605985 +
1681387076.8731558-UTR-H-akashiwo_Contig11:4610236..46105931681387076.8731558-UTR-H-akashiwo_Contig11:4610236..4610593Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig11 4610237..4610593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387076.7933345-CDS-H-akashiwo_Contig11:4605985..46061631681387076.7933345-CDS-H-akashiwo_Contig11:4605985..4606163Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4605986..4606163 +
1681387076.8030555-CDS-H-akashiwo_Contig11:4606334..46064141681387076.8030555-CDS-H-akashiwo_Contig11:4606334..4606414Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4606335..4606414 +
1681387076.8128088-CDS-H-akashiwo_Contig11:4606674..46067331681387076.8128088-CDS-H-akashiwo_Contig11:4606674..4606733Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4606675..4606733 +
1681387076.823277-CDS-H-akashiwo_Contig11:4606963..46070511681387076.823277-CDS-H-akashiwo_Contig11:4606963..4607051Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4606964..4607051 +
1681387076.8360016-CDS-H-akashiwo_Contig11:4607175..46072671681387076.8360016-CDS-H-akashiwo_Contig11:4607175..4607267Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4607176..4607267 +
1681387076.844576-CDS-H-akashiwo_Contig11:4608025..46081221681387076.844576-CDS-H-akashiwo_Contig11:4608025..4608122Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4608026..4608122 +
1681387076.853879-CDS-H-akashiwo_Contig11:4608450..46085521681387076.853879-CDS-H-akashiwo_Contig11:4608450..4608552Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4608451..4608552 +
1681387076.8635852-CDS-H-akashiwo_Contig11:4610137..46102361681387076.8635852-CDS-H-akashiwo_Contig11:4610137..4610236Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig11 4610138..4610236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig11.107.1

>prot_H-akashiwo_Contig11.107.1 ID=prot_H-akashiwo_Contig11.107.1|Name=mRNA_H-akashiwo_Contig11.107.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=265bp
MNHPKGTEHSKLLAAPCSLAVHAIQHEPEKQNAPCSDFDLEKANSLRRNE
NVINQGVCVGPFKITWLTEDFFLRICRYEIANAVSMIVPSLVSYILLEIY
AADTNRFAKAICLAPVIHFPFSFCYHGYMALPNFKEDWALLYHRLDSAFI
HAASSVYAYGISCSLGYGLLTAPANAVPICLLWRSTSRVPNTRMMQLSVT
MYLIPYLWQGMYLSFILVAASFFVILKIWEKKYLGAIYHSGMHVMMGLPQ
ALMVASALGLLPSI*
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mRNA from alignment at H-akashiwo_Contig11:4605872..4610593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig11.107.1 ID=mRNA_H-akashiwo_Contig11.107.1|Name=mRNA_H-akashiwo_Contig11.107.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4722bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4605872..4610593+ (Heterosigma akashiwo CCMP452)
TATATACTCACATGTGAACATATATTGGAATTGGATTGGGGTTGGGATTG
GGATTGGGGATCCGGCATATAAGTATAAGCACCAGACCTCTGCTGAAAGT
CGAAGGGTTCGATAATGAATCATCCGAAGGGAACTGAGCATTCAAAACTT
TTAGCGGCGCCCTGTTCCCTTGCCGTCCATGCCATTCAGCACGAGCCTGA
AAAACAGAATGCCCCATGCAGTGACTTTGATCTCGAGAAGGCAAACTCTC
TGAGGCGGAATGAGAACGTCATCAATCAAGGTGTTTGTGTAGGTAAAGTG
CTCTTACATCATTTGTAGGCTTTGTTCAAGACCCATGGAATTATTCTTTG
TTCAAGACACCATACAAGAAAAGAAAACCAAGCTTGGTCAGCTCCAGCTA
GATGACATTTCAGCCCTGACTGAGCGTTTTGGTACCTTGTCCTCTTGAAC
TTTACTCTTTCAGGGCCTTTCAAAATCACTTGGCTGACAGAAGATTTCTT
CCTGAGGATCTGCCGTTATGAAATTGCTAATGCAGTCTCAATGGTTGGTA
TCATATTATGTCTGTGTGTGTGTACGGAGTTCAAAGTCAGCACAACCAAA
TAGTTAGATCACCTAGCGTTGCTATAGCCATCACTATCATCCTTCGCCTC
AGCTCATCACCGTACTCATCCATTGATTGATAATTTGTACACCCTTCTTC
TCCTACACAAAAAAACTGTTTGTCTTTACATGGAAAAATGCTTTCGCATC
ATTCATGTGCAGCCATCCATCCCCAATCATCCGTTTCTTTCCCTCCCCCT
CAGATTGTGCCCAGTCTTGTCAGCTACATTTTACTAGAAATTTATGCGGC
TGATACCAACAGGTACAGCACCATATTGAGTTTGTTGGACATACTACTAT
ACATCAATCATCTGTACATATTTACCCAAAGTTCAGGGTTTGTATATTTT
CAGCACAGCTGTCTTCTTTCCAGGCACAGGCAATTTTGTATTCACACTTC
GTGTCAAGAAATATATCCGGCAATCTCACTTCGTAGTGATATGCAATTAT
GAAGCCATTGTTGCCAAAATATTTCCTGGGTGCTTCATACAGGTTTGCCA
AAGCTATTTGCTTAGCTCCAGTGATTCATTTTCCATTTTCTTTCTGCTAC
CATGGCTATATGGCACTACCCAACTTCAAGGTAAAATCCAGCATTTATAT
TTTCAACCTTTCATCCCCCAAGAAACTTCATTCGCACATTTTTTGCTTCT
ATACGCAGCTTTTCTTGGGGAGAGGGAGTCAACACACCAAAAACTAAACA
ACAGGAAGACTGGGCACTGCTGTACCACCGGCTTGATTCAGCCTTCATCC
ACGCGGCTTCCTCAGTCTACGCGTACGGCATCTCCTGCAGCCTTGGGTGG
GTCTGGGGGACGGCTTAATTTACTTGCAATGTATAACGATGATCATTTAG
TTAGCCTGGTGATGCCGGCCGAGGGCTGTGGTGATATGTAGCTTGCGGAT
GGACTGTTTTTCCAAGTTAGGTAAGGAGACACTGCAGCTTTCTTTTCATA
TTAGGGATCCCTAACCTAATATATAAAGATTATTATTATACATTCGAATA
ATGGCGCTCTCGGAGGCCGATGGTGATGTTTCGCGCTCATTCTTGTATTT
TCTGACATTCCGTGCATCACACACTGTGCTTCGGATTTCGAGAGTATATT
TAGTCTTGATTGGTTTTTGAAAGCTGTTGCCCTTTGTATATTGCACTTGG
GTAATGGTGATGATAATTATTATTATTGTGGTTGTTCTTCTTCTTCTCCA
CTACAAGAGATTATATTCTCTTGCCTGGCTTCCAGCAGTGGCAGAGCAAC
TGCGGTTTACAACTACACTTTGGGGGCAGCCGACGCCGCCCCACAACTTG
GCTTCACTTTCAATTTCATCTTCATTTTTAAAAACCCCCTTCATTTAGAT
TCACCCCCTTTTGAAATGATTGGTATATAACCGCATCTTTGTTATTGTCA
TAATAGCGGCTGCTGCTCCAGAAAAGGTCTCTAGTTTCCCGGGGGCAAGA
TCGGCCAGAGCAGTCAGGTGACGCAGGCCAGGCGCGGTCTCCACAGCCTT
CTTCGCCCCCCCCCCCCTCCTCTTCCCTCAAACGCGCCCGCTCCCCGCCG
GCAGCTACGGCCTGCTCACCGCGCCGGCCAACGCGGTCCCCATCTGCCTC
CTGTGGCGCAGCACCTCGCGGGTGCCGAACACCCGCATGATGCAGCTCTC
GGTGAGGGGCCGCGGGCGGGCGGGCGGGGGTACAACGCAGGAGGGCGTCG
CGGTCGGTGCGTGCCTGCCCCGCCCCGCTGCGGGGCGGGGCCGCTCGGGG
ACCAGAGGTCCCGCCAGCTGCCGATTGCACACAATTTGAAGCTTCTCCGT
TGCGGCCTCCTTGCTGGACAAGAGAACGTGGGTTGTGGTTAATCTTTCTG
GCATAGAGAGCATTCTTTCTCTCTTTTTCTCTTCTCTGATTCCTTCATTG
CATGAAGAATGCTACACAGCTGGACGGAAGATTATTTTTTCACCTTTCCT
CTCACTATCTTCATCTGTGTCTGTACCAGGTGACCATGTATCTGATACCA
TATTTGTGGCAAGGGATGTACCTGAGTTTCATTTTGGTTGCCGCGTCATT
CTTTGTTATTTTGAAGATCTGGGAGAAGAAGGTGACGACCCCACGCCACA
ACAAAAAAGAAAAGTATAAGTGTTTTTTTTTTTTTTTTTTTTTTTGCATA
TTTTAGATTAATTAAAACAAATCATCAATCAATAAATGACACCCTGTTCC
TTTTATTTCACGAGGCAGTCGGCAAGTTTCGACTTCACCGTGAGACTTTT
CAGGGTCAACGATCACCGCGTGGGTCACTGATGCGCCAATATATTTGGGA
GATCAGCGATATAATACCCTTCGTCATCTCTGAGGATCACCGTAATACAG
CCTCTCATATTTGATCGCGCTTCGCCTTCTAAAACCACGCTAAATTGATT
TTTTACACTGCGGTACTACGAGTTTCTAAAAACCAATTTTCTTCTTCTAA
AAGAAGAAGAAAATAAGTTTTTCTGATTTGCACAAATTATCCGAAGAAAA
GTCTCGGAACACGAGTGGTTGGTCAGCTTCTTTCTCTTCCCTACTGCTGA
ATTATTCGTACCACCAACGGGTCTCTCTGTCCTCCTCCACGAACTCTTGT
GCAGGCTCTTGCTCGTCGAATATTTCTGCTGGTATAGCTATGGTGTAGAA
AGCCAGAACATAAACCAGCAGAAAGAGTAGCAAGAGCACAGGCTGGAGGA
CAGGGAAACTTTTCAAGCAACTTCCTCCTTTTATTTTTGTTTTATGCTTC
CGGAGGAAGGCTGCGCAATATTTACTGCTTGAAAAAACGAGTCGAACCCT
CTATTCAAAGTGGAATTTGGAGCTCTAGAAGCCGAGATATTTGTGAGCAG
ATCTATGGACTTACGAAGCGGCAGAAAGTGACCCCCTTTTTGGCGCGCAA
TCTGAAAAAAAGTAAGCAGGGTTTAATAATGTAACGTGCATTCCGAGATT
CCTGCTCGGAGAGATAAATTATTTCATCAAGGGATGAGGTATTTATTTTT
GATATGTATGTATATATGCAAAAATACATTACTGTATGTATATGGAAATT
CATGTTGAGAAAGGGGAGAGGAAGCAGAAAAGTATCCAAAATGTATCTTT
TCGCTTTTGGTCCGACTTTGTATTTTTCTTCGCGTTACGGAAAGTTTTGG
TGAAATAGGATTGGTCAACCATCACAAATGAACTATCTTCCCACATCCGT
ACCCAAGATATTGACACAATGCATTGGTAATAAATGGTCTGGAAAAAGGG
TGAATAATTATTTCTACTTTATTGGTTTGGCCAGGACAACAAATTTTGAA
CTAATAATGCTGGCTCCCGCATCTATATTATCAATGAAACGAACTCTTCA
TCCCTCGAAACTTTTCATCCCCGCCAAAATGGAAGGGATGATGAAGTAAC
AAACATTAAGAAATATATTTCACGCCTCCAAATTCTGGCTCCTGTAAAAC
AACTTAAATCTATACGTCAATGAAATGAACTCTTCATCCCTCGAAATTCT
TCATCCCTCCAACCCACCTCGGAATGCACGTAAAAAAATCCACAACCACT
CATGTCTCATGCGTATGTATGCTGCTCCAGTACTTTTGGTGGAAGATCAT
AGATTAGATATATATATTTAATGTAATTTCTATCACGCTGGCCATTCTCT
TCCATTATCTGCACAGTACCTGGGAGCCATCTACCACTCTGGGATGCACG
TGATGATGGGATTGCCGCAGGCCTTGATGGTGGCCAGTGCGCTGGGCTTG
TTGCCCTCCATTTGAGGGGCTTTGCCGCACGGATGTTGCCTCGCGTGCTT
TCTTTTGGTCGCCAGAGTCAGGAGGCGGCCATCTCTTCTTGTTGTTAGAG
TTTGTATGTGCTTAAACGGTTACATAAAGCTGCTCCTCTTGTATTTTTTT
TTGCTGCCACCACAGAATTGTGCATATTCATGTATCTCTCTCTCTCTGTG
TTTATAGCATCTTTTGCTTCTTTTTTTTCGACTATATTATTGTTGAGTTA
GAGGCCCGGGCAGGTGTTAGGATTGGTCCTAAAAACAAAAAAATACATGG
CAATAAAGAGGAAAGCCTCCTTTTTGTTATTTGTGAAAAAATATAATATG
AGCAGCTTGCCTGCTTCAATGT
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Coding sequence (CDS) from alignment at H-akashiwo_Contig11:4605872..4610593+

>mRNA_H-akashiwo_Contig11.107.1 ID=mRNA_H-akashiwo_Contig11.107.1|Name=mRNA_H-akashiwo_Contig11.107.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=795bp|location=Sequence derived from alignment at H-akashiwo_Contig11:4605872..4610593+ (Heterosigma akashiwo CCMP452)
ATGAATCATCCGAAGGGAACTGAGCATTCAAAACTTTTAGCGGCGCCCTG
TTCCCTTGCCGTCCATGCCATTCAGCACGAGCCTGAAAAACAGAATGCCC
CATGCAGTGACTTTGATCTCGAGAAGGCAAACTCTCTGAGGCGGAATGAG
AACGTCATCAATCAAGGTGTTTGTGTAGGGCCTTTCAAAATCACTTGGCT
GACAGAAGATTTCTTCCTGAGGATCTGCCGTTATGAAATTGCTAATGCAG
TCTCAATGATTGTGCCCAGTCTTGTCAGCTACATTTTACTAGAAATTTAT
GCGGCTGATACCAACAGGTTTGCCAAAGCTATTTGCTTAGCTCCAGTGAT
TCATTTTCCATTTTCTTTCTGCTACCATGGCTATATGGCACTACCCAACT
TCAAGGAAGACTGGGCACTGCTGTACCACCGGCTTGATTCAGCCTTCATC
CACGCGGCTTCCTCAGTCTACGCGTACGGCATCTCCTGCAGCCTTGGCTA
CGGCCTGCTCACCGCGCCGGCCAACGCGGTCCCCATCTGCCTCCTGTGGC
GCAGCACCTCGCGGGTGCCGAACACCCGCATGATGCAGCTCTCGGTGACC
ATGTATCTGATACCATATTTGTGGCAAGGGATGTACCTGAGTTTCATTTT
GGTTGCCGCGTCATTCTTTGTTATTTTGAAGATCTGGGAGAAGAAGTACC
TGGGAGCCATCTACCACTCTGGGATGCACGTGATGATGGGATTGCCGCAG
GCCTTGATGGTGGCCAGTGCGCTGGGCTTGTTGCCCTCCATTTGA
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