mRNA_H-akashiwo_Contig1053.2.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1053.2.1
Unique NamemRNA_H-akashiwo_Contig1053.2.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A7S4DBW5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBW5_HETAK)

HSP 1 Score: 159 bits (401), Expect = 3.900e-48
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCPPGYVLRLRAPVEGLK 252
            AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEY LD++MDDVVAAFISSELGEDEVYLEVPEGF CPPGYVL LRA VEGLK
Sbjct:   55 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYDLDMYMDDVVAAFISSELGEDEVYLEVPEGFDCPPGYVLHLRAAVEGLK 138
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BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A699UV58_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=3 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699UV58_TANCI)

HSP 1 Score: 70.1 bits (170), Expect = 1.990e-13
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCP--PGYVLRLRAPVEGLK 252
            AKGF QT G+ Y E+FS    + ++R+ + +   YG +I+  DV  AF++  L  DEVY+E PEGFV P  P  V +L+  + GLK
Sbjct:   14 AKGFSQTPGIDYEETFSLVADIRAIRILIAIAAYYGYEIWQMDVKTAFVNGYLN-DEVYMEQPEGFVNPKYPNRVCKLKRSIYGLK 98
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BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A6L2LNG9_TANCI (Putative retrotransposon protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LNG9_TANCI)

HSP 1 Score: 73.6 bits (179), Expect = 2.000e-13
Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCP--PGYVLRLRAPVEGLK 252
            AKGF QT GV Y E+FSP   M ++R+ + +   Y  +I+  DV  AF++  L + EVY+E PEGFV P  P +V +L+  + GLK
Sbjct:   44 AKGFTQTYGVDYEETFSPVADMRAIRILIAIAAYYDYEIWQIDVKTAFLNEHLSK-EVYMEQPEGFVNPKYPNHVCKLKRSIYGLK 128
[Close]
BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A2P6SC01_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6SC01_ROSCH)

HSP 1 Score: 73.6 bits (179), Expect = 2.240e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVC--PPGYVLRLRAPVEGLK 252
            AKGF QT G+ Y E+F+P  KMT++R+ L +       +   DV  AF+  EL E+EVY+ +P G+V   P  +V RLR  + GLK
Sbjct:  559 AKGFTQTYGIDYDETFAPVAKMTTIRVLLSIAASLNWPLRQFDVKNAFLHGELAEEEVYMSLPPGYVVDSPGDFVCRLRKSLYGLK 644
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BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: UPI000B78C152 (uncharacterized protein LOC110683848 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78C152)

HSP 1 Score: 73.2 bits (178), Expect = 3.070e-13
Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCPPGYVLRLRAPVEGLK 252
            AKGF Q  GV Y E+FSP +KM+++R  + L  + G ++F  D+  AF+   L E EVY+++PEG   P G V RL+  + GLK
Sbjct:  835 AKGFTQKYGVDYEETFSPVVKMSTIRSLISLAAQNGWNLFQLDINNAFLHETLHE-EVYMKIPEGVSAPAGNVCRLKKSLYGLK 917
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BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A1J3JY42_NOCCA (Copia protein (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JY42_NOCCA)

HSP 1 Score: 69.3 bits (168), Expect = 3.470e-13
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCPPGYVLRLRAPVEGLK 252
            A+GF QT G+ Y ++FSP  K+ ++R+ L L    G D++  DV  AF+  +L E EVY+  P G    PG VL LR  + GLK
Sbjct:   35 ARGFTQTYGLDYLDTFSPVAKLHTVRVLLALATNLGWDLWQMDVKNAFLQGDLDE-EVYMTPPPGITITPGKVLSLRKAIYGLK 117
[Close]
BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A699R2R0_TANCI (Retrotransposon protein, putative, Ty1-copia subclass (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699R2R0_TANCI)

HSP 1 Score: 71.2 bits (173), Expect = 4.820e-13
Identity = 37/86 (43.02%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCP--PGYVLRLRAPVEGLK 252
            AKG+ QTLG+ Y E+FSP   + ++R+ + +   Y  +I+  DV  AF++  L E EVY+E PEGFV P  P  V +L+  + GLK
Sbjct:  115 AKGYTQTLGIDYEETFSPVADIRAIRILIAIAAYYDYEIWQIDVKTAFLNGYLNE-EVYMEQPEGFVNPKYPNRVCKLKHSIYGLK 199
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BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: UPI000B8AC3C7 (uncharacterized protein LOC110791793 n=1 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8AC3C7)

HSP 1 Score: 72.4 bits (176), Expect = 5.580e-13
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCPPGYVLRLRAPVEGLK 252
            AKGF Q  G+ Y E+FSP +KM+++R  + L    G  +F  D+  AF+   L E E+Y++VPEGF  P G+V +L   + GLK
Sbjct:  533 AKGFTQKYGIDYHETFSPVVKMSTVRCLISLAASKGWKLFQLDINNAFLHGNLDE-ELYMKVPEGFHAPAGHVCKLTKSLYGLK 615
[Close]
BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A2N9ICU5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9ICU5_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 7.620e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCP--PGYVLRLRAPVEGLK 252
            AKGFDQ  G+ Y+E+FSP +K T++R+ L L V +   I   DV  AF+   L E EVY+E P GFV P  P +V RL   + GLK
Sbjct:  106 AKGFDQENGIDYTETFSPVIKPTTIRVILALAVHFNWPIRQLDVSNAFLHGSLTE-EVYMEQPRGFVDPHFPNHVCRLHKALYGLK 190
[Close]
BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Match: A0A2N9E9J4_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9E9J4_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 7.700e-13
Identity = 41/86 (47.67%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:    1 AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFISSELGEDEVYLEVPEGFVCP--PGYVLRLRAPVEGLK 252
            AKGFDQ  G+ Y+E+FSP +K T++R+ L L V +   I   DV  AF+   L E EVY+E P GFV P  P +V RL   + GLK
Sbjct:  246 AKGFDQENGIDYTETFSPVIKPTTIRVILALAVHFNWPIRQLDVSNAFLHGSLTE-EVYMEQPRGFVDPHFPNHVCRLHKALYGLK 330
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1053.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DBW5_HETAK3.900e-4892.86Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A699UV58_TANCI1.990e-1343.02Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A6L2LNG9_TANCI2.000e-1344.19Putative retrotransposon protein n=1 Tax=Tanacetum... [more]
A0A2P6SC01_ROSCH2.240e-1343.02Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
UPI000B78C1523.070e-1344.05uncharacterized protein LOC110683848 n=1 Tax=Cheno... [more]
A0A1J3JY42_NOCCA3.470e-1342.86Copia protein (Fragment) n=1 Tax=Noccaea caerulesc... [more]
A0A699R2R0_TANCI4.820e-1343.02Retrotransposon protein, putative, Ty1-copia subcl... [more]
UPI000B8AC3C75.580e-1342.86uncharacterized protein LOC110791793 n=1 Tax=Spina... [more]
A0A2N9ICU5_FAGSY7.620e-1347.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9E9J4_FAGSY7.700e-1347.67Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1053contigH-akashiwo_Contig1053:156100..156351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2711.XP_006494841.1
PFAMsRVT_2,Retrotran_gag_2,Retrotran_gag_3
Model size252
Max annot lvl35493|Streptophyta
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.42e-13
EggNOG OGsCOG2801@1|root,KOG4658@1|root,KOG0017@2759|Eukaryota,KOG4658@2759|Eukaryota,37YXJ@33090|Viridiplantae,3GHMT@35493|Streptophyta
DescriptionMitochondrial protein
Cds size252
COG categoryL
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387063.89846-CDS-H-akashiwo_Contig1053:156099..1563511681387063.89846-CDS-H-akashiwo_Contig1053:156099..156351Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1053 156100..156351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1053.2.1prot_H-akashiwo_Contig1053.2.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1053 156100..156351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1053.2.1

>prot_H-akashiwo_Contig1053.2.1 ID=prot_H-akashiwo_Contig1053.2.1|Name=mRNA_H-akashiwo_Contig1053.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=84bp
AKGFDQTLGVSYSESFSPTLKMTSLRLFLHLCVEYGLDIFMDDVVAAFIS
SELGEDEVYLEVPEGFVCPPGYVLRLRAPVEGLK
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mRNA from alignment at H-akashiwo_Contig1053:156100..156351+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1053.2.1 ID=mRNA_H-akashiwo_Contig1053.2.1|Name=mRNA_H-akashiwo_Contig1053.2.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=252bp|location=Sequence derived from alignment at H-akashiwo_Contig1053:156100..156351+ (Heterosigma akashiwo CCMP452)
GCCAAAGGCTTCGATCAGACACTTGGGGTCTCTTACAGTGAGTCATTTAG
TCCGACGCTTAAGATGACTAGTCTGCGTCTTTTTCTGCACCTGTGTGTAG
AGTATGGCCTCGACATCTTCATGGATGATGTCGTGGCGGCTTTCATCAGC
TCGGAGCTGGGCGAAGACGAGGTTTACCTGGAAGTGCCAGAGGGCTTTGT
CTGCCCTCCAGGATATGTTCTTCGTCTGCGGGCACCGGTGGAGGGCCTGA
AG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1053:156100..156351+

>mRNA_H-akashiwo_Contig1053.2.1 ID=mRNA_H-akashiwo_Contig1053.2.1|Name=mRNA_H-akashiwo_Contig1053.2.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=252bp|location=Sequence derived from alignment at H-akashiwo_Contig1053:156100..156351+ (Heterosigma akashiwo CCMP452)
GCCAAAGGCTTCGATCAGACACTTGGGGTCTCTTACAGTGAGTCATTTAG
TCCGACGCTTAAGATGACTAGTCTGCGTCTTTTTCTGCACCTGTGTGTAG
AGTATGGCCTCGACATCTTCATGGATGATGTCGTGGCGGCTTTCATCAGC
TCGGAGCTGGGCGAAGACGAGGTTTACCTGGAAGTGCCAGAGGGCTTTGT
CTGCCCTCCAGGATATGTTCTTCGTCTGCGGGCACCGGTGGAGGGCCTGA
AG
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