prot_H-akashiwo_Contig927.3.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig927.3.1
Unique Nameprot_H-akashiwo_Contig927.3.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length143
Homology
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BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Match: A0A7S3UX59_HETAK (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX59_HETAK)

HSP 1 Score: 287 bits (735), Expect = 5.380e-96
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 0 
Query:    1 MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSCDVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA 143
            MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLL+GDSVTSHISSYCYSSCDVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA
Sbjct:    1 MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLLQGDSVTSHISSYCYSSCDVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA 143
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BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Match: A0A3M3SR77_PSECI (GYF_2 domain-containing protein n=27 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A3M3SR77_PSECI)

HSP 1 Score: 56.2 bits (134), Expect = 1.720e-6
Identity = 36/125 (28.80%), Postives = 63/125 (50.40%), Query Frame = 0 
Query:   15 GIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSCDVNPYDL-----PSTASLFQTLFGA----LSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIED-GAIVLLHPCAFLCSTAGVAL 129
            G+DF ++GS+ Q +++ L RG+S  +   S  Y +CDV    +       ++ L  +LFGA    L+G+   +   F   G+  G +  +    G ILP+H+ D G  ++    +FL    GV++
Sbjct:  117 GVDFKLYGSETQFVELELDRGESAVAEAGSMMYKTCDVQMETIFGDGSSQSSGLLGSLFGAGKRMLTGESLFTTV-FSQQGSGKGRVAFAAPYPGTILPLHLRDFGGKLICQKDSFLAGAKGVSI 240
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BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Match: A0A077LG07_9PSED (AIM24 domain protein n=1 Tax=Pseudomonas sp. StFLB209 TaxID=1028989 RepID=A0A077LG07_9PSED)

HSP 1 Score: 51.6 bits (122), Expect = 6.970e-5
Identity = 34/125 (27.20%), Postives = 62/125 (49.60%), Query Frame = 0 
Query:   15 GIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSCDVNPYDL-----PSTASLFQTLFGA----LSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIED-GAIVLLHPCAFLCSTAGVAL 129
            G+DF ++GS+ Q +++ L RG+S  +   +  Y +CDV    +       ++ L  +LFGA    L+G+   +   F   G   G +  +    G ILP+++ D G  ++    +FL    GV++
Sbjct:  113 GVDFKLYGSETQFVELELDRGESAVAEAGAMMYKTCDVQMETIFGDGSSQSSGLLGSLFGAGKRMLTGESLFTTV-FSQQGAGKGRVAFAAPYPGTILPLNLRDFGGKLVCQKDSFLAGAKGVSI 236
[Close]
BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Match: A0A0Q5FID0_9PSED (GYF_2 domain-containing protein n=7 Tax=Pseudomonas TaxID=286 RepID=A0A0Q5FID0_9PSED)

HSP 1 Score: 51.2 bits (121), Expect = 9.520e-5
Identity = 34/125 (27.20%), Postives = 61/125 (48.80%), Query Frame = 0 
Query:   15 GIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSCDVNPYDL-----PSTASLFQTLFGA----LSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIED-GAIVLLHPCAFLCSTAGVAL 129
            G+DF +FG++ Q +++ L RG+S  +   +  Y +CDV    +       ++ L  +LFGA    L+G+   +   F   G   G +  +    G ILP+ + D G  ++    +FL    GV++
Sbjct:  116 GVDFKLFGTETQFVELELDRGESAVAEAGAMMYKTCDVQMETIFGDGSSQSSGLLGSLFGAGKRMLTGESLFTTV-FSQQGAGKGRVAFAAPYPGTILPLRLRDFGGKLVCQKDSFLAGAKGVSI 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3UX59_HETAK5.380e-9699.30Altered inheritance of mitochondria protein 24, mi... [more]
A0A3M3SR77_PSECI1.720e-628.80GYF_2 domain-containing protein n=27 Tax=Pseudomon... [more]
A0A077LG07_9PSED6.970e-527.20AIM24 domain protein n=1 Tax=Pseudomonas sp. StFLB... [more]
A0A0Q5FID0_9PSED9.520e-527.20GYF_2 domain-containing protein n=7 Tax=Pseudomona... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002838Mitochondrial biogenesis protein AIM24PFAMPF01987AIM24coord: 18..133
e-value: 8.2E-6
score: 25.7
IPR036983Mitochondrial biogenesis AIM24 superfamilyGENE3D3.60.160.10Mitochondrial biogenesis AIM24coord: 10..136
e-value: 4.2E-11
score: 44.4
IPR016031Tryptophan RNA-binding attenuator protein-like domain superfamilySUPERFAMILY51219TRAP-likecoord: 16..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig927contigH-akashiwo_Contig927:184012..188058 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig927.3.1mRNA_H-akashiwo_Contig927.3.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig927 183881..188058 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig927.3.1 ID=prot_H-akashiwo_Contig927.3.1|Name=mRNA_H-akashiwo_Contig927.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=143bp
MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSC
DVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNG
KILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002838AIM24
IPR036983AIM24_sf
IPR016031Trp_RNA-bd_attenuator-like_dom