mRNA_H-akashiwo_Contig927.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig927.3.1
Unique NamemRNA_H-akashiwo_Contig927.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Match: A0A7S3UX59_HETAK (Altered inheritance of mitochondria protein 24, mitochondrial n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX59_HETAK)

HSP 1 Score: 290 bits (743), Expect = 1.870e-96
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 3 
Query:  132 MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSCDVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA 560
            MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLL+GDSVTSHISSYCYSSCDVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA
Sbjct:    1 MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLLQGDSVTSHISSYCYSSCDVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA 143
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BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Match: A0A3M3SR77_PSECI (GYF_2 domain-containing protein n=27 Tax=Pseudomonadaceae TaxID=135621 RepID=A0A3M3SR77_PSECI)

HSP 1 Score: 56.6 bits (135), Expect = 3.540e-6
Identity = 36/125 (28.80%), Postives = 63/125 (50.40%), Query Frame = 3 
Query:  174 GIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSCDVNPYDL-----PSTASLFQTLFGA----LSGDPTSSMKKFLNDGTLPGCLTLSGRQNGKILPVHIED-GAIVLLHPCAFLCSTAGVAL 518
            G+DF ++GS+ Q +++ L RG+S  +   S  Y +CDV    +       ++ L  +LFGA    L+G+   +   F   G+  G +  +    G ILP+H+ D G  ++    +FL    GV++
Sbjct:  117 GVDFKLYGSETQFVELELDRGESAVAEAGSMMYKTCDVQMETIFGDGSSQSSGLLGSLFGAGKRMLTGESLFTTV-FSQQGSGKGRVAFAAPYPGTILPLHLRDFGGKLICQKDSFLAGAKGVSI 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig927.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3UX59_HETAK1.870e-9699.30Altered inheritance of mitochondria protein 24, mi... [more]
A0A3M3SR77_PSECI3.540e-628.80GYF_2 domain-containing protein n=27 Tax=Pseudomon... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig927contigH-akashiwo_Contig927:183881..188058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog3694.POPTR_0001s15570.1
PFAMsAIM24
Model size561
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons4
Evalue2.09e-06
EggNOG OGsCOG2013@1|root,2QVFQ@2759|Eukaryota,37M7G@33090|Viridiplantae,3GGP2@35493|Streptophyta,4JE1I@91835|fabids
Ec32 ortholog descriptionTryptophan RNA-binding attenuator protein-like domain
Ec32 orthologEc-07_005040.1
DescriptionMitochondrial biogenesis AIM24
Cds size429
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.3724687-UTR-H-akashiwo_Contig927:183880..1840111681388045.3724687-UTR-H-akashiwo_Contig927:183880..184011Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig927 183881..184011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388045.385754-CDS-H-akashiwo_Contig927:184011..1840891681388045.385754-CDS-H-akashiwo_Contig927:184011..184089Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig927 184012..184089 +
1681388045.396951-CDS-H-akashiwo_Contig927:184408..1845481681388045.396951-CDS-H-akashiwo_Contig927:184408..184548Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig927 184409..184548 +
1681388045.4078665-CDS-H-akashiwo_Contig927:184711..1848611681388045.4078665-CDS-H-akashiwo_Contig927:184711..184861Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig927 184712..184861 +
1681388045.4199164-CDS-H-akashiwo_Contig927:187997..1880581681388045.4199164-CDS-H-akashiwo_Contig927:187997..188058Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig927 187998..188058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig927.3.1prot_H-akashiwo_Contig927.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig927 184012..188058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig927.3.1

>prot_H-akashiwo_Contig927.3.1 ID=prot_H-akashiwo_Contig927.3.1|Name=mRNA_H-akashiwo_Contig927.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=143bp
MNNQNQQEHHHRETGIDFSIFGSDVQVLQITLLRGDSVTSHISSYCYSSC
DVNPYDLPSTASLFQTLFGALSGDPTSSMKKFLNDGTLPGCLTLSGRQNG
KILPVHIEDGAIVLLHPCAFLCSTAGVALSAKAVPLPPGPRAA
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mRNA from alignment at H-akashiwo_Contig927:183881..188058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig927.3.1 ID=mRNA_H-akashiwo_Contig927.3.1|Name=mRNA_H-akashiwo_Contig927.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=4178bp|location=Sequence derived from alignment at H-akashiwo_Contig927:183881..188058+ (Heterosigma akashiwo CCMP452)
CTGCAACTGAAACTGAAATTGGAATTGGAATTGTTGGGGAAAGGCAGGTC
CGTTCGGAAAGGCCAGAGACCTGTAGACTGTAGTGCACACCATGCTTCTA
TAATATTCTTTCTGAAACCACAGGTTGAAAAATGAATAACCAGAACCAGC
AAGAGCATCATCATCGCGAAACTGGGATTGACTTTTCCATTTTTGGTAGC
GATGTGCAGGTACACTGGAAATTATTTCTGCATGGATGTATTGATAGATG
GTAGCTACCATTACTGTTTCATACTACAGATATTTGAATTTATGCACCAA
TGGCCTTGGCTCATTTCCATCAAGCTGAAGGAAAATGGGTTCACCTTTGC
TTGTTACTATATATAGCAACAAAGTGGAATGGAATTTGGGCCCAATACTC
CCTTCCCTCATCTTTTTTTGAAGAGTAATTTGAAAAGTGCCCGCACATGC
TGTATCTCGCAGACGCGGAGATTCCATTTAGCCAATGAAACTTGCCCTCC
CCTCTAACAACAATGCTGAACATAACAGGTCTTGCAGATAACGCTTTTAC
GGGGAGATTCAGTCACTTCTCACATTAGCTCATACTGCTATAGCAGTTGT
GATGTGAATCCCTATGATCTGCCATCTACCGCCAGTTTATTTCAAACACT
TTTTGGTGCATTATCTGGGTATTGGACTTACTTGCGCACCAGTCTCAGTG
GACATCTTAGATAATATCCATATGATCATCATGTACTTGTTTGTTGCACA
AAGAATATAAAAAGGCGGTGGGGAAATGTTGACCTCCCCCCCCCCCCTCT
ATACCTTTCACCTCCCTTCAAAATTTCCAAGAGATCCCACAAGTTCTATG
AAGAAGTTCTTGAATGACGGAACATTACCAGGCTGCCTAACTCTGTCAGG
AAGACAGAATGGTAAAATATTACCTGTACACATTGAGGATGGAGCAATCG
TCCTCCTGCACCCTTGTGCTTTTCTGTGCAGGTGAGCCAAGTTCTTTTTT
TCAAACGAAGTTCTCCATGCTTCATGAATATTTTATCTGATGTGTCACCG
CAGAGCTGATCTCTTCACATAGATTGAAACGGTGCCCTGTGCTTCAAATC
TCACAATCATATTTTACAAATCACCAAGAATGACCCTATTGAGTAATGTA
AAAGTTCCATCTCTAATATTGAAGCTATATGACTAGGATGATTTGGTGTT
GCGAGTATTCAGTGCCATTTAAATAGTATAGCCATCTTCCGGGGAATTGC
GACAGTTTGACCAAAGCGGAAACACTTGACTTTTTTTTTTTTTTTGTCTA
CGTAGTACCACCATGCTCTTTATGGTGGGGTCAGTCTCCATATCCTCGAC
AGTCGATGTTTCTTTCGCGGTTATTCACCGAGATCGCATCGGTCCGATAC
TCGCGGGATTATTCCGTCAGGCGTGGCGCATTTTTCCAGATCTAAGGCCG
CTGTGGTCCGTGTTCATTCTTGTCTCACGTCGACATTTCCCCACCAATGT
CTCAGTCCTTCGCGTTTCGAATGTTGAAGCGTGATTCGCGATTTCGATGC
ATTTCGGCACACACCTAAAACTGTCGCCATTTTGGCAAGCGCTGGGTATC
GATCCTGCAACCTCTTGCTTCGAAAGTTGACTTCCGAAGGGCTGAGCTAT
TCCGGGTCATCATAAAAACAACCACCAAACCTCCCAAACGCCAAACCTGG
GGGTATGAGCCTTGGTGTTAGTGAAATCAGGCTCAATTTTTTTCACAGAC
CTAGCAGTGGCAGTTATTGGACAACGCATGACGCAATACTGGCCTATCCC
GCCTGCGATGGTGATGATGATGCTGTTGGATTTAATTTAGAGTCTATAGT
CAGGAGCCTTTCAAATCGCTTACGGGGAAAACCAGCAAAAACTAGCCACC
CTCTAACTTTTATAAGCAGACCTTTCCATTTCCACTATAATCTATACTTG
TTGTCGATGCAGGTGTACTTTGATTCATCACATTATTCATATACCTCTTA
GCTTGTACGTTTGGTTTACCCAAACGTGAACTGTAGTAGGTATTGCTGTT
GAGGAACTGGCAGTGCTGTAGTGTTGCTGAATCACAGGAAAACTACAGTG
TTCTCTTGACTAAGATTCGGTCATTTTCGCGTTAAGTTGAAATATTCTTA
GCGTTCGCGGACCTTACCTTCGATTATTTTTAAGTATTTTCGAGGTGGCG
AAGAAGTAGAAGAAGAAGTAAAGGAGAAGAAGCAGAGACAGAGCCTCAAA
AACAATGAGGACAATAAGCAGTAGAAAAAAGAACAAAACGATCGCAAATA
ATGACAAAAAAATCAATTTTCGATCCTTTTTTTTTTTTTTTTTATACGTG
TTCTACTTGCAATgCGTTCCTTCACATCCTGAACCACACAACCACCGTCT
ATTTGCAGGCTGCCTTTGACATCTGATGCATTTCTTCAGATCAAGTGTGA
TTACTGACCAACTTTGGCCGTCGTTTATATTTAAAGTGCTGAAGCGGGAC
TCTTTTCCAGTAGTCAAGACAGGATGGGCGAGTCTCCACGATGATAAAAC
TCTAATTGTAGCTTGCTCCCCCGAAGAACTCCATGAAGAGGGCCTATAAA
AATTTAACAAATTATTCACTCCATTTGGGCTGACATTGCGAAAGAAGGCC
TGGGTCGGAGGCTGCTGCTTATTCATTTTGATATGTATGATGGGCGAGTC
TCTACAATACTCTATTTGCAGCTTGCCCCGAACTCCATTTGGGCTGCCTC
TCTTTGCCGCTGCCGCTGTGAGTCTCCACAATATATACACTGTAACTCGA
AGCGACGAAGCCAACTCTTCTTCCTCCTATGCTGCTGCTGCTGCTGCTGC
GCGACGAAGAAGAAGAGGGATTTGGTGACGAATGACGAACCACGAAGCGA
CGAAGCCGACTCTTCTTCCTCTGCTGCTGCTGCTGCTAATCACCACGATA
CAAATATTGCCGAATATTTTTTCTAAAATTTATGAAGAGGAAGAAGAAAA
TGCTACGATTTCACGACTGACCGCCTTGCCCTGTGTGTGGCGAATAAACA
GTGTTGCATGAGACTCAAAATTAGTGGTCAGTCGTGTGATAGCAAACACC
TTTGAGGTGGGTCATATCATCAGATCAGCAGACACAAAGGAAGGCGGTGG
GGCACAGAGCAGACAAAACTGCCCAGGAAGTGCTCATCGCTTTCATGAAT
AAACGCCCACCTCCAGTAGTCAAGACAGGATGGGCGAGTCTCCACGATGG
TACTCTAAACTCTAATTGTAGCTTGCTGACTTTTTTAAGTGATACTTTGA
AGAAAAACTTTGTTTGTAACAAACGAGCGTTTTGTTGAAGAAAATACATA
GATGCTGCGAAAATTCCATCAGAAATTAATAAGAGAATTCGCATTTGGTC
AAATTTCAACCAGAAACACATTTTTTCCATCAAAATCAGGAAATTCCCAA
ATTTTGATTCCAAAAGACAACTTCTAAGCGGGAATTCGGACAGTTTTACA
AAAGGTTTTGTAGTATATCGACAAAAGATTGAAGTCATCATCATCATCTC
CCCCCCCCCCTGCCAAGCCATCGCGAAGTCATCACCTCTTGGACCCGATC
ATCACGTCGCGAACCCCCCCAAGTCATCATGTCGCGAAGCCCCCCCCACC
CAAATGATGACGCCATTCATATATGACCCCCTTTTTCATTAATCAAACGC
CCTGTGAGCTTGACAAACCTTGCCAGCCTCTCAATTTTCCTCAACATGTT
CTCCAGAATAGAAGCCGTATCCCCCCTCACCATGAGACCATCCAATTTCA
GCCGTCGTCTATATACCTATATATGTCCCGCGAGTGGCGAGCCGGTGCGA
TCTCGGTACTGCGAAAGGAACACTGCCAGTCAAGAACACGGCAGAGCACG
GTGTGGAAAAACAGAACACACACACACTCACTCACTCGCACAGCCAGCTC
ATCACTGCAGTGCGCAGAAGAAAAACCAAGTGCCCGAACGCCCCCCCCCC
ATGTCCTCAGACCGCCTCGTCCCGGCCCCCGAGTCGGGGGTCGGCGAACA
GCCCCTTCGCCCCACCACCCCCAGCGCCCCCGCCTTCTCCGCGGGTGGGG
GTCCCGGGGCCGGCCAGCACCGCGGGGGTGGCGCTGAGCGCGAAGGCGGT
GCCCCTGCCCCCGGGGCCGCGGGCCGCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig927:183881..188058+

>mRNA_H-akashiwo_Contig927.3.1 ID=mRNA_H-akashiwo_Contig927.3.1|Name=mRNA_H-akashiwo_Contig927.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=429bp|location=Sequence derived from alignment at H-akashiwo_Contig927:183881..188058+ (Heterosigma akashiwo CCMP452)
ATGAATAACCAGAACCAGCAAGAGCATCATCATCGCGAAACTGGGATTGA
CTTTTCCATTTTTGGTAGCGATGTGCAGGTCTTGCAGATAACGCTTTTAC
GGGGAGATTCAGTCACTTCTCACATTAGCTCATACTGCTATAGCAGTTGT
GATGTGAATCCCTATGATCTGCCATCTACCGCCAGTTTATTTCAAACACT
TTTTGGTGCATTATCTGGAGATCCCACAAGTTCTATGAAGAAGTTCTTGA
ATGACGGAACATTACCAGGCTGCCTAACTCTGTCAGGAAGACAGAATGGT
AAAATATTACCTGTACACATTGAGGATGGAGCAATCGTCCTCCTGCACCC
TTGTGCTTTTCTGTGCAGCACCGCGGGGGTGGCGCTGAGCGCGAAGGCGG
TGCCCCTGCCCCCGGGGCCGCGGGCCGCG
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