prot_H-akashiwo_Contig125.10.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig125.10.1
Unique Nameprot_H-akashiwo_Contig125.10.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length194
Homology
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7S2V1A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.390e-28
Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 0
Query:   93 SEPDGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPE 180
            S PD      RK FVGGLAWETT++T   YF +   VET+MLL+DR +GRSRGFGFVT+ +KA  EKVL+  H+LDGRDLKVN+ATPE
Sbjct:   58 SAPDDRTSDGRKLFVGGLAWETTEDTVNNYFSRFTSVETVMLLKDRVTGRSRGFGFVTIKDKADVEKVLKMDHKLDGRDLKVNMATPE 145          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7S2APT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APT4_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.120e-20
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 0
Query:  104 KCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDIVPKK 194
            K FVGGLAWET+ ET + +F K  PV  ++L RDR +GRSRGFGFVT    A AEKVL   H LDGR+L +N ATPE   + A D   P K
Sbjct:   95 KIFVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVTFQEAAVAEKVLNIQHSLDGRELNLNSATPERIDSRAADGTEPVK 185          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.940e-17
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 0
Query:   97 GSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDI 190
            G+     K F+GG++WETT+ET R +F K  P+    L++D+ SG+ RGFGFVT  + A  ++VLE+SH +DGR ++V  A P +K A    D+
Sbjct:   96 GAQKQPGKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDV 189          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A2C9UYY5_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UYY5_MANES)

HSP 1 Score: 87.8 bits (216), Expect = 5.080e-17
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0
Query:   96 DGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 181
            D S     K FVGG++WETT+ET   YF K   +   +++ DR SGR RGFGFVT  + A A++VLE+ H +DGR+++V    P E
Sbjct:   55 DSSSSFPGKLFVGGVSWETTEETFMNYFSKYGEITDSVIMTDRHSGRPRGFGFVTFADPAVADRVLEEDHLIDGREVEVKRTVPRE 140          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: B9S5X3_RICCO (Heterogeneous nuclear ribonucleoprotein A1, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S5X3_RICCO)

HSP 1 Score: 87.8 bits (216), Expect = 5.980e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   98 SDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 181
            SD  + K FVGG++WETT+ET   YF K   +   +++RDR SGR RGFGFVT  + A A++VLE+ H +D R ++V    P E
Sbjct:   74 SDSSQGKLFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGRPRGFGFVTFADLAAADRVLEEDHIIDDRAVEVKRTVPRE 157          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7N0UZZ1_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UZZ1_KALFE)

HSP 1 Score: 87.8 bits (216), Expect = 8.320e-17
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 0
Query:   97 GSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 181
            G D  + K FVGG++WETT+ET   YF K   +   +++ D+ +GR RGFGF+T  + A A+KVLEK H +DGR ++V    P E
Sbjct:   75 GRDSSEGKLFVGGISWETTEETFSNYFRKFGEIADSVIMMDKITGRPRGFGFITFSDPADADKVLEKEHVIDGRAVEVKRTVPRE 159          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A3M6VT05_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT05_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.090e-16
Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 0
Query:   97 GSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDI 190
            G+     K F+GG++WETT++T R++F K  P+    L++D+ +G+ RGFGFVT  + +  ++VLE++H LDGR ++V  A P E+ A    +I
Sbjct:  109 GTSTQPGKLFIGGVSWETTEDTLRQHFGKYGPLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAPGSSEI 202          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A328RT86_9BACT (RNA-binding protein n=1 Tax=Candidatus Marinamargulisbacteria bacterium SCGC AG-410-N11 TaxID=2184345 RepID=A0A328RT86_9BACT)

HSP 1 Score: 80.5 bits (197), Expect = 1.660e-16
Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 0
Query:  101 MKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEK--SHRLDGRDLKVNLA 177
            M +K FVGGL+W+T ++  R YFE+I  VE ++++ DR +GRSRGFGFVT+  +  A+  +E+     LDGR LK+N A
Sbjct:    1 MGKKLFVGGLSWDTKEDGLRTYFEEIGTVEDLIIITDRETGRSRGFGFVTMSTEEEAKTAIEQFDGKELDGRRLKINEA 79          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A6P6XD71_COFAR (heterogeneous nuclear ribonucleoprotein 1 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6XD71_COFAR)

HSP 1 Score: 86.7 bits (213), Expect = 1.680e-16
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 0
Query:   79 NKDDDEKVEHDPKLSEPDGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 181
            N DD     HD KLS  D S     K FVGG+AWET++E+  +YF K   +   +++ D+ SGR RGFGFVT  +   A KVLE+ H +DGR ++V    P E
Sbjct:   65 NIDDSTTAGHDLKLSVDDSS---AGKLFVGGIAWETSEESFSRYFSKYGELTDSVIMMDKISGRPRGFGFVTFADPEVANKVLEEEHIIDGRTVEVKRTVPRE 164          
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7S0NRL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NRL9_9EUKA)

HSP 1 Score: 86.3 bits (212), Expect = 2.770e-16
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 0
Query:   95 PDGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKG 183
            P   D +  K F+GGL WET ++  ++YF+K A V   M+LR+R SG+SRGFGFVT+  +   + ++++ H L+GR L V  A P   G
Sbjct:  206 PPRGDAIHNKLFLGGLPWETNEDAIKEYFDKYATVIDCMVLRERDSGKSRGFGFVTIAEEDRVQSIIDQEHELEGRQLTVRRAAPRGSG 294          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2V1A7_9STRA1.390e-2863.64Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2APT4_9STRA1.120e-2056.04Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0WG76_9STRA2.940e-1743.62Uncharacterized protein AlNc14C88G5606 n=1 Tax=Alb... [more]
A0A2C9UYY5_MANES5.080e-1746.51Uncharacterized protein n=1 Tax=Manihot esculenta ... [more]
B9S5X3_RICCO5.980e-1747.62Heterogeneous nuclear ribonucleoprotein A1, putati... [more]
A0A7N0UZZ1_KALFE8.320e-1745.88Uncharacterized protein n=2 Tax=Kalanchoe fedtsche... [more]
A0A3M6VT05_9STRA1.090e-1640.43Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A328RT86_9BACT1.660e-1648.10RNA-binding protein n=1 Tax=Candidatus Marinamargu... [more]
A0A6P6XD71_COFAR1.680e-1644.66heterogeneous nuclear ribonucleoprotein 1 n=3 Tax=... [more]
A0A7S0NRL9_9EUKA2.770e-1642.70Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 104..175
e-value: 8.2E-16
score: 68.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 106..167
e-value: 1.8E-12
score: 46.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 103..179
score: 16.073748
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..187
e-value: 5.4E-23
score: 83.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..102
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 9..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..101
NoneNo IPR availablePANTHERPTHR48024GEO13361P1-RELATEDcoord: 49..180
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 89..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig125contigH-akashiwo_Contig125:278817..281474 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig125.10.1mRNA_H-akashiwo_Contig125.10.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig125 278791..281474 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig125.10.1 ID=prot_H-akashiwo_Contig125.10.1|Name=mRNA_H-akashiwo_Contig125.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=194bp
MADSTEDMMQPEITEETETQEEAEEEEEPEVEDEKEGSDAEAAEEEDNEE
EEPQNDESKPEEATKSENGDKEDDKGDTNKDDDEKVEHDPKLSEPDGSDI
MKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVT
LINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDIVPKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf