mRNA_H-akashiwo_Contig125.10.1 (mRNA) Heterosigma akashiwo CCMP452
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Overview
Homology
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7S2V1A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1A7_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.780e-28 Identity = 56/88 (63.64%), Postives = 67/88 (76.14%), Query Frame = 3
Query: 303 SEPDGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPE 566
S PD RK FVGGLAWETT++T YF + VET+MLL+DR +GRSRGFGFVT+ +KA EKVL+ H+LDGRDLKVN+ATPE
Sbjct: 58 SAPDDRTSDGRKLFVGGLAWETTEDTVNNYFSRFTSVETVMLLKDRVTGRSRGFGFVTIKDKADVEKVLKMDHKLDGRDLKVNMATPE 145
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7S2APT4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2APT4_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 1.410e-20 Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 3
Query: 336 KCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDIVPKK 608
K FVGGLAWET+ ET + +F K PV ++L RDR +GRSRGFGFVT A AEKVL H LDGR+L +N ATPE + A D P K
Sbjct: 95 KIFVGGLAWETSMETVKDHFSKFGPVVDVILPRDRETGRSRGFGFVTFQEAAVAEKVLNIQHSLDGRELNLNSATPERIDSRAADGTEPVK 185
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: F0WG76_9STRA (Uncharacterized protein AlNc14C88G5606 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG76_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.660e-17 Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 3
Query: 315 GSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDI 596
G+ K F+GG++WETT+ET R +F K P+ L++D+ SG+ RGFGFVT + A ++VLE+SH +DGR ++V A P +K A D+
Sbjct: 96 GAQKQPGKLFIGGVSWETTEETLRDHFGKYGPLTDAALMKDKFSGQPRGFGFVTFADVAVLDRVLEESHTIDGRTVEVKRAIPRDKTASGPSDV 189
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A2C9UYY5_MANES (Uncharacterized protein n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UYY5_MANES) HSP 1 Score: 87.8 bits (216), Expect = 6.310e-17 Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 3
Query: 312 DGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 569
D S K FVGG++WETT+ET YF K + +++ DR SGR RGFGFVT + A A++VLE+ H +DGR+++V P E
Sbjct: 55 DSSSSFPGKLFVGGVSWETTEETFMNYFSKYGEITDSVIMTDRHSGRPRGFGFVTFADPAVADRVLEEDHLIDGREVEVKRTVPRE 140
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: B9S5X3_RICCO (Heterogeneous nuclear ribonucleoprotein A1, putative n=1 Tax=Ricinus communis TaxID=3988 RepID=B9S5X3_RICCO) HSP 1 Score: 87.8 bits (216), Expect = 7.440e-17 Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = 3
Query: 318 SDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 569
SD + K FVGG++WETT+ET YF K + +++RDR SGR RGFGFVT + A A++VLE+ H +D R ++V P E
Sbjct: 74 SDSSQGKLFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGRPRGFGFVTFADLAAADRVLEEDHIIDDRAVEVKRTVPRE 157
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7N0UZZ1_KALFE (Uncharacterized protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UZZ1_KALFE) HSP 1 Score: 87.8 bits (216), Expect = 1.040e-16 Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 3
Query: 315 GSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 569
G D + K FVGG++WETT+ET YF K + +++ D+ +GR RGFGF+T + A A+KVLEK H +DGR ++V P E
Sbjct: 75 GRDSSEGKLFVGGISWETTEETFSNYFRKFGEIADSVIMMDKITGRPRGFGFITFSDPADADKVLEKEHVIDGRAVEVKRTVPRE 159
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A3M6VT05_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VT05_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.360e-16 Identity = 38/94 (40.43%), Postives = 62/94 (65.96%), Query Frame = 3
Query: 315 GSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKGADAEDDI 596
G+ K F+GG++WETT++T R++F K P+ L++D+ +G+ RGFGFVT + + ++VLE++H LDGR ++V A P E+ A +I
Sbjct: 109 GTSTQPGKLFIGGVSWETTEDTLRQHFGKYGPLTDAALMKDKYTGQPRGFGFVTFADASAIDRVLEETHTLDGRSVEVKRAIPRERTAPGSSEI 202
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A328RT86_9BACT (RNA-binding protein n=1 Tax=Candidatus Marinamargulisbacteria bacterium SCGC AG-410-N11 TaxID=2184345 RepID=A0A328RT86_9BACT) HSP 1 Score: 80.5 bits (197), Expect = 2.030e-16 Identity = 38/79 (48.10%), Postives = 55/79 (69.62%), Query Frame = 3
Query: 327 MKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEK--SHRLDGRDLKVNLA 557
M +K FVGGL+W+T ++ R YFE+I VE ++++ DR +GRSRGFGFVT+ + A+ +E+ LDGR LK+N A
Sbjct: 1 MGKKLFVGGLSWDTKEDGLRTYFEEIGTVEDLIIITDRETGRSRGFGFVTMSTEEEAKTAIEQFDGKELDGRRLKINEA 79
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A6P6XD71_COFAR (heterogeneous nuclear ribonucleoprotein 1 n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6XD71_COFAR) HSP 1 Score: 86.7 bits (213), Expect = 2.090e-16 Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 3
Query: 261 NKDDDEKVEHDPKLSEPDGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEE 569
N DD HD KLS D S K FVGG+AWET++E+ +YF K + +++ D+ SGR RGFGFVT + A KVLE+ H +DGR ++V P E
Sbjct: 65 NIDDSTTAGHDLKLSVDDSS---AGKLFVGGIAWETSEESFSRYFSKYGELTDSVIMMDKISGRPRGFGFVTFADPEVANKVLEEEHIIDGRTVEVKRTVPRE 164
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Match: A0A7S0NRL9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NRL9_9EUKA) HSP 1 Score: 86.3 bits (212), Expect = 3.450e-16 Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 3
Query: 309 PDGSDIMKRKCFVGGLAWETTQETCRKYFEKIAPVETMMLLRDRSSGRSRGFGFVTLINKAGAEKVLEKSHRLDGRDLKVNLATPEEKG 575
P D + K F+GGL WET ++ ++YF+K A V M+LR+R SG+SRGFGFVT+ + + ++++ H L+GR L V A P G
Sbjct: 206 PPRGDAIHNKLFLGGLPWETNEDAIKEYFDKYATVIDCMVLRERDSGKSRGFGFVTIAEEDRVQSIIDQEHELEGRQLTVRRAAPRGSG 294 The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig125.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-akashiwo_Contig125.10.1 >prot_H-akashiwo_Contig125.10.1 ID=prot_H-akashiwo_Contig125.10.1|Name=mRNA_H-akashiwo_Contig125.10.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=194bp MADSTEDMMQPEITEETETQEEAEEEEEPEVEDEKEGSDAEAAEEEDNEEback to top mRNA from alignment at H-akashiwo_Contig125:278791..281474+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-akashiwo_Contig125.10.1 ID=mRNA_H-akashiwo_Contig125.10.1|Name=mRNA_H-akashiwo_Contig125.10.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2684bp|location=Sequence derived from alignment at H-akashiwo_Contig125:278791..281474+ (Heterosigma akashiwo CCMP452)back to top Coding sequence (CDS) from alignment at H-akashiwo_Contig125:278791..281474+ >mRNA_H-akashiwo_Contig125.10.1 ID=mRNA_H-akashiwo_Contig125.10.1|Name=mRNA_H-akashiwo_Contig125.10.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=582bp|location=Sequence derived from alignment at H-akashiwo_Contig125:278791..281474+ (Heterosigma akashiwo CCMP452)back to top |