prot_H-akashiwo_Contig12.108.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig12.108.1
Unique Nameprot_H-akashiwo_Contig12.108.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length373
Homology
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BLAST of mRNA_H-akashiwo_Contig12.108.1 vs. uniprot
Match: A0A6V1TNM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNM6_HETAK)

HSP 1 Score: 417 bits (1071), Expect = 4.370e-143
Identity = 223/237 (94.09%), Postives = 223/237 (94.09%), Query Frame = 0 
Query:    1 MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLELTQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLADALKLEQEKNVILGMDXXXXXXXNREQVLKQYRIAAK 237
            MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLELTQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLADALKLEQEKN              REQVLKQYRIAAK
Sbjct:    1 MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLELTQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLADALKLEQEKN--------------REQVLKQYRIAAK 223
[Close]
BLAST of mRNA_H-akashiwo_Contig12.108.1 vs. uniprot
Match: A0A6V1TNV4_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNV4_HETAK)

HSP 1 Score: 114 bits (284), Expect = 3.740e-25
Identity = 62/117 (52.99%), Postives = 80/117 (68.38%), Query Frame = 0 
Query:    1 MCDG--SRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPWCWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQLGLKEKKTDEL 115
            MC+G  S  E K  + +CRY++ G C+ GK CEFSH RPLCRYG           SH ITPRV+ +    KPG+ + RN++RREKR+VL+AEAK SLV++KELE QL L+EK+  EL
Sbjct:   26 MCEGHGSEEEEKDGRSVCRYYLRGWCRNGKRCEFSHRRPLCRYGDRXXXXXXXXXSHKITPRVSRV-GGTKPGRHNVRNRQRREKRRVLIAEAKVSLVRVKELEDQLKLEEKQKSEL 141
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig12.108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6V1TNM6_HETAK4.370e-14394.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TNV4_HETAK3.740e-2552.99Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..92
NoneNo IPR availableCOILSCoilCoilcoord: 98..142
NoneNo IPR availableCOILSCoilCoilcoord: 178..198
NoneNo IPR availableGENE3D4.10.1000.10coord: 4..81
e-value: 1.6E-5
score: 26.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 273..302
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 11..36
e-value: 0.0047
score: 26.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 10..37
score: 13.04672
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 10..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig12contigH-akashiwo_Contig12:5154169..5155287 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig12.108.1mRNA_H-akashiwo_Contig12.108.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig12 5153780..5155392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig12.108.1 ID=prot_H-akashiwo_Contig12.108.1|Name=mRNA_H-akashiwo_Contig12.108.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=373bp
MCDGSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPW
CWNSHGITPRVNSIRTARKPGKQSARNKRRREKRKVLMAEAKASLVKIKE
LETQLGLKEKKTDELQESERQLAGLQAQLEEETRIAKAHQERAITTDLEL
TQVTEMMVTAKEKCAEEVSSMKSESEKREKMLHEMKEHYVNLEQYTEKLA
DALKLEQEKNVILGMDLKLEQEKNREQVLKQYRIAAKRSGSWPNRLNCST
PRAGCQVARRRERRQWSWEGRSGPSWARAGAPDRRRVGPPSSALPSGAAA
DTLAQPRPAAVTLLTRSRASSAPVLHSRSSPCLPCRVDVGWHVGGREIGA
FGRCIGAFGRRIGAFGRRFANP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf