prot_H-akashiwo_Contig1137.1.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig1137.1.1
Unique Nameprot_H-akashiwo_Contig1137.1.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length153
Homology
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BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Match: UPI001FB68812 (cell wall protein AWA1-like isoform X1 n=5 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB68812)

HSP 1 Score: 64.3 bits (155), Expect = 2.180e-9
Identity = 42/104 (40.38%), Postives = 48/104 (46.15%), Query Frame = 0 
Query:   46 SCYCDDGCALNGDCCSDICTSCGYYCNATS----------TVVP---TVANSTCENNCGVSQICESQDSCCGCDAMCYFAGDCCSDYGTFCSNATIAP--TISW 134
            SCYCD  C  NGDCC D      YYC+ T+          TV P   T   S+C +NCG           C CD  C   GDCC DY  +CS  T+AP  T  W
Sbjct:  167 SCYCDQDCQQNGDCCPDY----NYYCSPTTVAPETTTPWITVAPEGTTTTASSCRHNCG------GFTGSCYCDQACQQNGDCCPDYSYYCSPTTVAPATTTPW 260
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BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Match: UPI00096AE847 (neurotrypsin-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096AE847)

HSP 1 Score: 52.0 bits (123), Expect = 6.620e-5
Identity = 45/118 (38.14%), Postives = 51/118 (43.22%), Query Frame = 0 
Query:   31 CTADTCDSEVSEGGES-CYCDDGCALNGDCCSDICTSCGYYCNATSTVVPTVANSTCENNCGVSQICE--SQDSC-----------CGCDAMCYFAGDCCSDYG-TFC---SNATIAP 130
            C   T  S    GG S CYCD  C +N DCC DI        N TS V   +  +    + G S  C   +  SC           C CDA CY  GDCC+D   T C   SN TIAP
Sbjct:   85 CNTSTSSSCRGTGGNSTCYCDQSCYINNDCCPDI--------NQTSCVQSNITETGSCVSAGFSGCCSYANNTSCRGHTPSGNLATCYCDAYCYIFGDCCTDVNATGCYSNSNVTIAP 194
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BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Match: A0A1X7UHV0_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UHV0_AMPQE)

HSP 1 Score: 52.0 bits (123), Expect = 7.630e-5
Identity = 45/118 (38.14%), Postives = 51/118 (43.22%), Query Frame = 0 
Query:   31 CTADTCDSEVSEGGES-CYCDDGCALNGDCCSDICTSCGYYCNATSTVVPTVANSTCENNCGVSQICE--SQDSC-----------CGCDAMCYFAGDCCSDYG-TFC---SNATIAP 130
            C   T  S    GG S CYCD  C +N DCC DI        N TS V   +  +    + G S  C   +  SC           C CDA CY  GDCC+D   T C   SN TIAP
Sbjct:   85 CNTSTSSSCRGTGGNSTCYCDQSCYINNDCCPDI--------NQTSCVQSNITETGSCVSAGFSGCCSYANNTSCRGHTPSGNLATCYCDAYCYIFGDCCTDVNATGCYSNSNVTIAP 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001FB688122.180e-940.38cell wall protein AWA1-like isoform X1 n=5 Tax=Mug... [more]
UPI00096AE8476.620e-538.14neurotrypsin-like n=1 Tax=Amphimedon queenslandica... [more]
A0A1X7UHV0_AMPQE7.630e-538.14Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001212Somatomedin B domainPROSITEPS00524SMB_1coord: 103..123
IPR001212Somatomedin B domainPROSITEPS50958SMB_2coord: 27..71
score: 7.145505
IPR001212Somatomedin B domainPROSITEPS50958SMB_2coord: 82..127
score: 7.682475
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..31
score: 6.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1137contigH-akashiwo_Contig1137:202491..203444 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1137.1.1mRNA_H-akashiwo_Contig1137.1.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig1137 202491..203492 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig1137.1.1 ID=prot_H-akashiwo_Contig1137.1.1|Name=mRNA_H-akashiwo_Contig1137.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=153bp
MGKVGFRWTAVLLLVVLGGILLFSGVSSLSCTADTCDSEVSEGGESCYCD
DGCALNGDCCSDICTSCGYYCNATSTVVPTVANSTCENNCGVSQICESQD
SCCGCDAMCYFAGDCCSDYGTFCSNATIAPTISWDFLSCNGSCTADSGVC
DAS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001212Somatomedin_B_dom