mRNA_H-akashiwo_Contig1137.1.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1137.1.1
Unique NamemRNA_H-akashiwo_Contig1137.1.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Match: UPI001FB68812 (cell wall protein AWA1-like isoform X1 n=5 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB68812)

HSP 1 Score: 64.3 bits (155), Expect = 3.300e-9
Identity = 42/104 (40.38%), Postives = 48/104 (46.15%), Query Frame = 1 
Query:  184 SCYCDDGCALNGDCCSDICTSCGYYCNATS----------TVVP---TVANSTCENNCGVSQICESQDSCCGCDAMCYFAGDCCSDYGTFCSNATIAP--TISW 450
            SCYCD  C  NGDCC D      YYC+ T+          TV P   T   S+C +NCG           C CD  C   GDCC DY  +CS  T+AP  T  W
Sbjct:  167 SCYCDQDCQQNGDCCPDY----NYYCSPTTVAPETTTPWITVAPEGTTTTASSCRHNCG------GFTGSCYCDQACQQNGDCCPDYSYYCSPTTVAPATTTPW 260
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BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Match: UPI00096AE847 (neurotrypsin-like n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096AE847)

HSP 1 Score: 52.0 bits (123), Expect = 9.580e-5
Identity = 45/118 (38.14%), Postives = 51/118 (43.22%), Query Frame = 1 
Query:  139 CTADTCDSEVSEGGES-CYCDDGCALNGDCCSDICTSCGYYCNATSTVVPTVANSTCENNCGVSQICE--SQDSC-----------CGCDAMCYFAGDCCSDYG-TFC---SNATIAP 438
            C   T  S    GG S CYCD  C +N DCC DI        N TS V   +  +    + G S  C   +  SC           C CDA CY  GDCC+D   T C   SN TIAP
Sbjct:   85 CNTSTSSSCRGTGGNSTCYCDQSCYINNDCCPDI--------NQTSCVQSNITETGSCVSAGFSGCCSYANNTSCRGHTPSGNLATCYCDAYCYIFGDCCTDVNATGCYSNSNVTIAP 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1137.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001FB688123.300e-940.38cell wall protein AWA1-like isoform X1 n=5 Tax=Mug... [more]
UPI00096AE8479.580e-538.14neurotrypsin-like n=1 Tax=Amphimedon queenslandica... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1137contigH-akashiwo_Contig1137:202491..203492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size508
Hectar predicted targeting categorysignal peptide
Exons3
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.1730936-CDS-H-akashiwo_Contig1137:202490..2026091681387094.1730936-CDS-H-akashiwo_Contig1137:202490..202609Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1137 202491..202609 -
1681387094.1836092-CDS-H-akashiwo_Contig1137:202861..2030321681387094.1836092-CDS-H-akashiwo_Contig1137:202861..203032Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1137 202862..203032 -
1681387094.1933658-CDS-H-akashiwo_Contig1137:203275..2034441681387094.1933658-CDS-H-akashiwo_Contig1137:203275..203444Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1137 203276..203444 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387094.2033083-UTR-H-akashiwo_Contig1137:203444..2034921681387094.2033083-UTR-H-akashiwo_Contig1137:203444..203492Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1137 203445..203492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1137.1.1prot_H-akashiwo_Contig1137.1.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1137 202491..203444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1137.1.1

>prot_H-akashiwo_Contig1137.1.1 ID=prot_H-akashiwo_Contig1137.1.1|Name=mRNA_H-akashiwo_Contig1137.1.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=153bp
MGKVGFRWTAVLLLVVLGGILLFSGVSSLSCTADTCDSEVSEGGESCYCD
DGCALNGDCCSDICTSCGYYCNATSTVVPTVANSTCENNCGVSQICESQD
SCCGCDAMCYFAGDCCSDYGTFCSNATIAPTISWDFLSCNGSCTADSGVC
DAS
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mRNA from alignment at H-akashiwo_Contig1137:202491..203492-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1137.1.1 ID=mRNA_H-akashiwo_Contig1137.1.1|Name=mRNA_H-akashiwo_Contig1137.1.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1002bp|location=Sequence derived from alignment at H-akashiwo_Contig1137:202491..203492- (Heterosigma akashiwo CCMP452)
GTGAGGTGGGGCGACTATTGATGATCAGCTAGGCTTTTACTTGCTTTGAT
GGGTAAGGTTGGTTTTCGTTGGACGGCAGTGCTGCTGCTGGTAGTTCTTG
GTGGAATCTTGCTTTTTTCAGGAGTGAGTTCTCTTTCTTGTACAGCAGAC
ACATGTGACAGCGAGGTTTCTGAGGGTGGAGAATCGTGTTATTGTGATGA
TGGTTGTGCTTTAAACGGTAAGGAAATTTCAATTATCCTACATTTTACGG
GATTGCTTTCCTTCACCTTCGAAGTTGAAGGAGGAAGGAAGAATGATAGG
GTCGTTTGTCCATCTTTCTATTTGGCATTATTAAGTACACATTTTTGTAA
GTGGCTCTTGGTCCATCTGCTCCCTAAAAGTTGTCTGGAAGTAAATTGAT
CTATTGGAGCAGACAAGTGCCGCTTTTTTTGTCATCTTTTTATTCTTCTT
CATACAACAGGAGATTGCTGCAGTGATATTTGCACCAGTTGCGGGTACTA
CTGTAATGCAACTAGTACAGTGGTACCAACAGTAGCAAACTCAACCTGTG
AAAATAACTGTGGTGTAAGCCAGATCTGTGAAAGTCAAGATTCCTGCTGT
GGCTGTGATGCAATGTGTTATTTTGCAGGAGGCATGTGTTTTTCTCTTCT
CCTCGCCTGCTTTTATTATATTATTATTCAGTATTTTAGTGTTGCGCGGG
GAGGGGGGGGGGGGGATATTGCAGTTTCGCATCATTATCTATTTTTTGAG
GGGAGTGGGACTTATCAAAACACTCAACATCATCAGCGGTTCACTTCATA
TTGTTTCATTTGCATGTTAGCTGTGGGAACTGATTGGTTGAACCCAATTG
ATACTTCCTGGTTGGTGTGGTGTTGAAAACCAGACTGCTGCTCAGATTAT
GGGACATTCTGTTCTAATGCTACAATTGCACCCACCATATCGTGGGACTT
TCTGAGCTGCAATGGGAGTTGTACTGCCGATTCTGGAGTTTGTGATGCAT
CA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1137:202491..203492-

>mRNA_H-akashiwo_Contig1137.1.1 ID=mRNA_H-akashiwo_Contig1137.1.1|Name=mRNA_H-akashiwo_Contig1137.1.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=459bp|location=Sequence derived from alignment at H-akashiwo_Contig1137:202491..203492- (Heterosigma akashiwo CCMP452)
ATGGGTAAGGTTGGTTTTCGTTGGACGGCAGTGCTGCTGCTGGTAGTTCT
TGGTGGAATCTTGCTTTTTTCAGGAGTGAGTTCTCTTTCTTGTACAGCAG
ACACATGTGACAGCGAGGTTTCTGAGGGTGGAGAATCGTGTTATTGTGAT
GATGGTTGTGCTTTAAACGGAGATTGCTGCAGTGATATTTGCACCAGTTG
CGGGTACTACTGTAATGCAACTAGTACAGTGGTACCAACAGTAGCAAACT
CAACCTGTGAAAATAACTGTGGTGTAAGCCAGATCTGTGAAAGTCAAGAT
TCCTGCTGTGGCTGTGATGCAATGTGTTATTTTGCAGGAGACTGCTGCTC
AGATTATGGGACATTCTGTTCTAATGCTACAATTGCACCCACCATATCGT
GGGACTTTCTGAGCTGCAATGGGAGTTGTACTGCCGATTCTGGAGTTTGT
GATGCATCA
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