prot_H-akashiwo_Contig1112.4.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig1112.4.1
Unique Nameprot_H-akashiwo_Contig1112.4.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length117
Homology
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BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A6V1TNM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNM6_HETAK)

HSP 1 Score: 102 bits (255), Expect = 4.200e-24
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 0 
Query:    1 MCEDRSSKEQGEKGRGVCFFFLRYSCRKGRWCRFSHRRPPXXYGENCNYGPTRCRYSHHGSTPKVRSVMVGGTTKKQGRHHARNRRRREKLKVLKAEAKVSLVKMKELETQL 112
            MC+   S+ + +K + +C +F+   C+KG+WC FSH RP   YG +C +GP  C ++ HG TP+V S+    T +K G+  ARN+RRREK KVL AEAK SLVK+KELETQL
Sbjct:    1 MCD--GSRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPW-C-WNSHGITPRVNSIR---TARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQL 105
[Close]
BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A6V1TNV4_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNV4_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 6.680e-21
Identity = 60/117 (51.28%), Postives = 75/117 (64.10%), Query Frame = 0 
Query:    1 MCEDRSSKEQGEKGRGVCFFFLRYSCRKGRWCRFSHRRPPXXYGENCNYGPTRCRYSHHGSTPKVRSVMVGGTTKKQGRHHARNRRRREKLKVLKAEAKVSLVKMKELETQLEEEQK 117
            MCE   S+E+ + GR VC ++LR  CR G+ C FSHRRP   YG+             H  TP+V    VGGT  K GRH+ RNR+RREK +VL AEAKVSLV++KELE QL+ E+K
Sbjct:   26 MCEGHGSEEEEKDGRSVCRYYLRGWCRNGKRCEFSHRRPLCRYGDRXXXXXXXXX--SHKITPRV--SRVGGT--KPGRHNVRNRQRREKRRVLIAEAKVSLVRVKELEDQLKLEEK 136
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6V1TNM6_HETAK4.200e-2450.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1TNV4_HETAK6.680e-2151.28Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 91..117
NoneNo IPR availableGENE3D4.10.1000.10coord: 6..75
e-value: 1.2E-6
score: 30.3
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..39
score: 10.211211

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1112contigH-akashiwo_Contig1112:134420..134770 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1112.4.1mRNA_H-akashiwo_Contig1112.4.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig1112 134420..136346 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig1112.4.1 ID=prot_H-akashiwo_Contig1112.4.1|Name=mRNA_H-akashiwo_Contig1112.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MCEDRSSKEQGEKGRGVCFFFLRYSCRKGRWCRFSHRRPPCRYGENCNYG
PTRCRYSHHGSTPKVRSVMVGGTTKKQGRHHARNRRRREKLKVLKAEAKV
SLVKMKELETQLEEEQK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH