mRNA_H-akashiwo_Contig1112.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig1112.4.1
Unique NamemRNA_H-akashiwo_Contig1112.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A6V1V0D1_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1V0D1_HETAK)

HSP 1 Score: 186 bits (472), Expect = 1.040e-55
Identity = 94/114 (82.46%), Postives = 96/114 (84.21%), Query Frame = -3 
Query:  147 PPAEFQAPSFSPGTPLLRPSAPSASLSGAYSSRDVFLAFSWCHQPSQISLSEWTHDGSTGT*WAHSYNSLRTGKEVYGEKIYTISLSCTSNGGRRSKRLFLFRPALLNCDLRTF 488
            PPAEFQAPSFSPGTP LRPSAPS+SLSGAYSSRDV  AF WCHQPS  SLSEWTHDGSTGT WAH Y  LR GK+VYGEK  TISL CTSNGGRRSKRLF F PALLNC L TF
Sbjct:  191 PPAEFQAPSFSPGTPSLRPSAPSSSLSGAYSSRDVSPAFLWCHQPSLSSLSEWTHDGSTGTLWAHKYIPLRIGKQVYGEKTCTISLFCTSNGGRRSKRLFRFCPALLNCALHTF 304
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BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A6V1TNV4_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNV4_HETAK)

HSP 1 Score: 109 bits (272), Expect = 1.110e-25
Identity = 70/142 (49.30%), Postives = 87/142 (61.27%), Query Frame = 2 
Query:   74 LSGGTDESGKV*QCRSLILVTLLFRMCEDRSSKEQGEKGRGVCFFFLRYSCRKGRWCRFSHRRPPXXYGENCNYGPTRCRYSHHGSTPKVRSVMVGGTTKKQGRHHARNRRRREKLKVLKAEAKVSLVKMKELETQLEEEQK 499
            L GG+ E G+        LV LLF MCE   S+E+ + GR VC ++LR  CR G+ C FSHRRP   YG+             H  TP+V    VGGT  K GRH+ RNR+RREK +VL AEAKVSLV++KELE QL+ E+K
Sbjct:    1 LQGGSKERGRQQLEWRFSLVALLFGMCEGHGSEEEEKDGRSVCRYYLRGWCRNGKRCEFSHRRPLCRYGDRXXXXXXXXX--SHKITPRV--SRVGGT--KPGRHNVRNRQRREKRRVLIAEAKVSLVRVKELEDQLKLEEK 136
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BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A6V1TNM6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TNM6_HETAK)

HSP 1 Score: 102 bits (255), Expect = 2.300e-23
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = 2 
Query:  149 MCEDRSSKEQGEKGRGVCFFFLRYSCRKGRWCRFSHRRPPXXYGENCNYGPTRCRYSHHGSTPKVRSVMVGGTTKKQGRHHARNRRRREKLKVLKAEAKVSLVKMKELETQL 484
            MC+   S+ + +K + +C +F+   C+KG+WC FSH RP   YG +C +GP  C ++ HG TP+V S+    T +K G+  ARN+RRREK KVL AEAK SLVK+KELETQL
Sbjct:    1 MCDG--SRSEAKKEKEICRYFVHGRCKKGKWCEFSHHRPLCRYGSHCWFGPW-C-WNSHGITPRVNSIR---TARKPGKQSARNKRRREKRKVLMAEAKASLVKIKELETQL 105
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BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A7S3Y6M3_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6M3_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 3.140e-14
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = -3 
Query:  369 PPPAEFQAPSFSPGTPLLRPSAPSASLSGAYSSRDVFLAFS 491
            PPPAEFQAPSFSPGTPLLRPSAPSASLSGAYSSRDVFLAFS
Sbjct:  226 PPPAEFQAPSFSPGTPLLRPSAPSASLSGAYSSRDVFLAFS 266
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BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A7S4DD89_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD89_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 1.630e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = -3 
Query:  372 SVPPPAEFQAPSFSPGTPLLRPSAPSASLSGAYSSRDVFLAF 497
            SVPPPAEFQAPS SPGTP LRPSAPS+SLSGAYSSRDV  AF
Sbjct:  119 SVPPPAEFQAPSLSPGTPSLRPSAPSSSLSGAYSSRDVSPAF 160
[Close]
BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Match: A0A7S3Y6F7_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6F7_HETAK)

HSP 1 Score: 68.6 bits (166), Expect = 5.280e-11
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = -3 
Query:  372 SVPPPAEFQAPSFSPGTPLLRPSAPSASLSGAYSSRDVFLAF 497
            SVPPPAEFQAPS SPGTP LRPSAPS+SLSGAYSSRDV  AF
Sbjct:  188 SVPPPAEFQAPSLSPGTPSLRPSAPSSSLSGAYSSRDVSPAF 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1112.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6V1V0D1_HETAK1.040e-5582.46Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A6V1TNV4_HETAK1.110e-2549.30Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
A0A6V1TNM6_HETAK2.300e-2350.89Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6M3_HETAK3.140e-14100.00Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S4DD89_HETAK1.630e-1188.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6F7_HETAK5.280e-1188.10Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1112contigH-akashiwo_Contig1112:134420..136346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size501
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.7809792-CDS-H-akashiwo_Contig1112:134419..1347701681387085.7809792-CDS-H-akashiwo_Contig1112:134419..134770Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig1112 134420..134770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387085.7906165-UTR-H-akashiwo_Contig1112:134770..1348321681387085.7906165-UTR-H-akashiwo_Contig1112:134770..134832Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1112 134771..134832 -
1681387085.7993448-UTR-H-akashiwo_Contig1112:136260..1363461681387085.7993448-UTR-H-akashiwo_Contig1112:136260..136346Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig1112 136261..136346 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1112.4.1prot_H-akashiwo_Contig1112.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig1112 134420..134770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig1112.4.1

>prot_H-akashiwo_Contig1112.4.1 ID=prot_H-akashiwo_Contig1112.4.1|Name=mRNA_H-akashiwo_Contig1112.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
MCEDRSSKEQGEKGRGVCFFFLRYSCRKGRWCRFSHRRPPCRYGENCNYG
PTRCRYSHHGSTPKVRSVMVGGTTKKQGRHHARNRRRREKLKVLKAEAKV
SLVKMKELETQLEEEQK
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mRNA from alignment at H-akashiwo_Contig1112:134420..136346-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig1112.4.1 ID=mRNA_H-akashiwo_Contig1112.4.1|Name=mRNA_H-akashiwo_Contig1112.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1927bp|location=Sequence derived from alignment at H-akashiwo_Contig1112:134420..136346- (Heterosigma akashiwo CCMP452)
TAATAAAACTCTTGATCCAAATTGCTCGCCTTTTAGGATCTGATTGAAAG
GCCCCTGTAGTCTAAAACAGGGTCTTTCAGGTGGTAGCCAGAGAAAATTC
AAGCTAAAGGGGGTCTAAAAATGGACAGAATAGGGGTATTCGTTTGACAG
CCTAAAAACGGCTCGATTGGGACAAAAGTGGTGCCAATCGACAGCTTTCC
GCGCGCCCGATCTGCTCAAAAAATCTGGTCCCAATCGCGGAACAAAAAAA
AAAATGCCGCGCGGAGCAGGGGTGAGTCCCAGCAGTGGAGAGGAGAAGGA
GATATATTGATAACCACTTCCTCTTCTGCACAAAAATAATTCTTCCTCTT
CTGAAACTTTCAAAATTCTCCTCTAACTTTGTCGAATTCCCCCAAAATGG
TGGGACTTCTCGGGGATTTTTGAAATACCATAATTTCCGTCCGATCGTTC
ATAAAAATGATGAAAATGCCCCAAAAATCCCACAAATTTTTGAGAGGGTA
CCTCTACACTTCTCCTTCTTTATTTTCTCTATCTCTTTTCAAGACAATAT
CAAGATGTGTGGAGAGGGACTGAAAATTTAAAAGTTGCATAAAAATTCCA
AAGTTTTAAACTAGAACTTTGAAATATTTTCACAAAATTACACCGCCGTT
TACACAACAGCACAGCAGCTCAAAATGGCCAGCAGAGCTCGTGATTTTAT
CACAAATTTCGCAGCTCACGGGCCCACCACTTCATTCAGGTAAGAAGGCA
CTATGGTAACCTGTGTCTTTTGGTGCAACGAACGGCAATGCACGAAGCCC
ATGTAACGTGGAGAATTGGTGGGCCTTTTTCGTTCCTCAGCGGAATGGTA
TTGGGAGTAAAATTGTGTGACATCGGACTATCAAGCTTTTTTATTGCATT
GAAACCTCTTAGAGATACAAATTGGCGAATACATACCCATGTGGAGAAAC
AGGTGAGTTCAAAACACGTGATATTTTACCAATAATGAGTTTCACTACAG
CCTAAGGCAAGGAAAAATGACCCAAGAACCCTTTGTGGCCAACAGATAGA
GAGTCCCCCTCGCCCCAAAGCCCCCAAGTGATAGATATCCACAGCAACTT
GTTTTGTACAACACTGCTTTTTAACAACATATTGTACTTTCCCAAATGAA
AAGTTCCACATGAGTACTGTTTAATATATTTTTATAGTTTCTCATTTATC
ATTGATGGAGTTCCTACTATACACTGATACCTGCAGCTCGTACCAGTGTC
CATCAATTCTTCTCCCTCTGCTACACTGGTCCCCTTCGTAGTAGGTAGTA
GAGGAGGAAGAAGAAGAACAAAGAGAAGATGACAACAAGTATAACATTCA
TCTTCTATTTCTTCTTCTTCTTCCTCTGTTACACACTACTGCTCCCATGT
ATTCCTTACTCGCTCCTATAGTTTCTCTTGTTGGTGCAGCTGAGGGGGGT
CGGATAACCATTTTTGTCCAACGCTCTATGGGAAATCGATACCCTTTAGC
TCGAATCTTCTCAGCAGACGAATCGGGAAAGGTGTAGCAGTGCCGGAGTC
TTATCTTGGTGACCCTGCTTTTCAGAATGTGCGAAGATCGCAGTTCAAAA
GAGCAGGGCGAAAAAGGAAGAGGCGTTTGCTTCTTCTTCCTCCGTTACTC
GTGCAGGAAAGGGAGATGGTGTAGATTTTCTCACCGTAGACCTCCTTGCC
GGTACGGAGAGAATTGTAACTATGGGCCCACTAGGTGCCGGTACTCCCAT
CATGGGTCCACTCCGAAAGTGAGATCTGTGATGGTTGGTGGCACCACGAA
AAAGCAAGGAAGACATCACGCGAGGAATAGGCGCCGGAGAGAGAAGCTGA
AGGTGCTGAAGGCCGAAGCAAAGGTGTCCCTGGTGAAAATGAAGGAGCTT
GAAACTCAGCTGGAGGAGGAACAGAAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig1112:134420..136346-

>mRNA_H-akashiwo_Contig1112.4.1 ID=mRNA_H-akashiwo_Contig1112.4.1|Name=mRNA_H-akashiwo_Contig1112.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig1112:134420..136346- (Heterosigma akashiwo CCMP452)
ATGTGCGAAGATCGCAGTTCAAAAGAGCAGGGCGAAAAAGGAAGAGGCGT
TTGCTTCTTCTTCCTCCGTTACTCGTGCAGGAAAGGGAGATGGTGTAGAT
TTTCTCACCGTAGACCTCCTTGCCGGTACGGAGAGAATTGTAACTATGGG
CCCACTAGGTGCCGGTACTCCCATCATGGGTCCACTCCGAAAGTGAGATC
TGTGATGGTTGGTGGCACCACGAAAAAGCAAGGAAGACATCACGCGAGGA
ATAGGCGCCGGAGAGAGAAGCTGAAGGTGCTGAAGGCCGAAGCAAAGGTG
TCCCTGGTGAAAATGAAGGAGCTTGAAACTCAGCTGGAGGAGGAACAGAA
A
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