prot_H-akashiwo_Contig108.21.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig108.21.1
Unique Nameprot_H-akashiwo_Contig108.21.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length52
Homology
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BLAST of mRNA_H-akashiwo_Contig108.21.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.860e-5
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 0 
Query:    4 CRNRPDP---LSAQPGLDVDNLTTAMTRFYSSIFTLVMPDFDKVQQSSIK 50
            C  R DP   L +QPG+D+++L +A+  FY S+F+LVMP+FD++    ++
Sbjct:  540 CIERADPSTPLVSQPGMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLR 589
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig108.21.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S2SLV6_9STRA2.860e-542.00Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig108contigH-akashiwo_Contig108:1461202..1461357 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig108.21.1mRNA_H-akashiwo_Contig108.21.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig108 1461172..1461357 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig108.21.1 ID=prot_H-akashiwo_Contig108.21.1|Name=mRNA_H-akashiwo_Contig108.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MEVCRNRPDPLSAQPGLDVDNLTTAMTRFYSSIFTLVMPDFDKVQQSSIK
IQ
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