mRNA_H-akashiwo_Contig108.21.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig108.21.1
Unique NamemRNA_H-akashiwo_Contig108.21.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig108.21.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA)

HSP 1 Score: 49.3 bits (116), Expect = 3.210e-5
Identity = 21/50 (42.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   40 CRNRPDP---LSAQPGLDVDNLTTAMTRFYSSIFTLVMPDFDKVQQSSIK 180
            C  R DP   L +QPG+D+++L +A+  FY S+F+LVMP+FD++    ++
Sbjct:  540 CIERADPSTPLVSQPGMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLR 589
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BLAST of mRNA_H-akashiwo_Contig108.21.1 vs. uniprot
Match: D8LSC2_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC2_ECTSI)

HSP 1 Score: 48.5 bits (114), Expect = 5.890e-5
Identity = 20/55 (36.36%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:    4 CGLKNVVNLMEVCRNRPDPLSAQPGLDVDNLTTAMTRFYSSIFTLVMPDFDKVQQ 168
            CG+   V        +  P++  PGL   +L+  +  FYSS+FTLVMPDF+++++
Sbjct:  259 CGVAQAVRAAAAAEGQTGPMNEVPGLQERSLSAVLRSFYSSLFTLVMPDFERLRR 313
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig108.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2SLV6_9STRA3.210e-542.00Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
D8LSC2_ECTSI5.890e-536.36Conserved oligomeric Golgi complex subunit 6 n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig108contigH-akashiwo_Contig108:1461172..1461357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSC2
Preferred nameCOG6
PFAMsCOG6
Model size187
Max annot lvl2759|Eukaryota
KEGG koko:K20293
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0031090,GO:0031984,GO:0032258,GO:0032588,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0070085,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023
Exons1
Evalue0.000707
EggNOG OGsKOG3758@1|root,KOG3758@2759|Eukaryota
Descriptionintra-Golgi vesicle-mediated transport
Cds size156
COG categoryS
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.8689175-UTR-H-akashiwo_Contig108:1461171..14612011681387070.8689175-UTR-H-akashiwo_Contig108:1461171..1461201Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig108 1461172..1461201 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681387070.878363-CDS-H-akashiwo_Contig108:1461201..14613571681387070.878363-CDS-H-akashiwo_Contig108:1461201..1461357Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig108 1461202..1461357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig108.21.1prot_H-akashiwo_Contig108.21.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig108 1461202..1461357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig108.21.1

>prot_H-akashiwo_Contig108.21.1 ID=prot_H-akashiwo_Contig108.21.1|Name=mRNA_H-akashiwo_Contig108.21.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=52bp
MEVCRNRPDPLSAQPGLDVDNLTTAMTRFYSSIFTLVMPDFDKVQQSSIK
IQ
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mRNA from alignment at H-akashiwo_Contig108:1461172..1461357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig108.21.1 ID=mRNA_H-akashiwo_Contig108.21.1|Name=mRNA_H-akashiwo_Contig108.21.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=186bp|location=Sequence derived from alignment at H-akashiwo_Contig108:1461172..1461357+ (Heterosigma akashiwo CCMP452)
AGCTGCGGTCTCAAGAATGTGGTGAACTTGATGGAAGTTTGCAGGAATCG
ACCTGATCCCTTATCAGCTCAGCCAGGCTTGGATGTTGATAATTTGACAA
CAGCAATGACCAGGTTTTATTCCTCGATTTTCACTTTGGTGATGCCTGAC
TTTGATAAGGTTCAGCAGTCTTCAATTAAAATTCAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig108:1461172..1461357+

>mRNA_H-akashiwo_Contig108.21.1 ID=mRNA_H-akashiwo_Contig108.21.1|Name=mRNA_H-akashiwo_Contig108.21.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=156bp|location=Sequence derived from alignment at H-akashiwo_Contig108:1461172..1461357+ (Heterosigma akashiwo CCMP452)
ATGGAAGTTTGCAGGAATCGACCTGATCCCTTATCAGCTCAGCCAGGCTT
GGATGTTGATAATTTGACAACAGCAATGACCAGGTTTTATTCCTCGATTT
TCACTTTGGTGATGCCTGACTTTGATAAGGTTCAGCAGTCTTCAATTAAA
ATTCAG
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