prot_H-akashiwo_Contig1003.2.1 (polypeptide) Heterosigma akashiwo CCMP452

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-akashiwo_Contig1003.2.1
Unique Nameprot_H-akashiwo_Contig1003.2.1
Typepolypeptide
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Sequence length220
Homology
BLAST of mRNA_H-akashiwo_Contig1003.2.1 vs. uniprot
Match: A0A7S3Y0F1_HETAK (Serine--tRNA ligase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0F1_HETAK)

HSP 1 Score: 294 bits (752), Expect = 1.320e-94
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MVLSKVVFVVMVSAFLSATVRNFAYGFTTRTGLGRFRSSPVLFMSTTVARFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEIGQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLKR 195
            MVLSKVVFVVMVSAFLSATVRNFAYGFTTRTGLGRFRSSPVLFMSTTVARFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEIGQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLKR
Sbjct:    1 MVLSKVVFVVMVSAFLSATVRNFAYGFTTRTGLGRFRSSPVLFMSTTVARFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEIGQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLKR 195          
BLAST of mRNA_H-akashiwo_Contig1003.2.1 vs. uniprot
Match: F0Y990_AURAN (Serine--tRNA ligase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y990_AURAN)

HSP 1 Score: 69.7 bits (169), Expect = 2.800e-10
Identity = 56/164 (34.15%), Postives = 78/164 (47.56%), Query Frame = 0
Query:   35 RFRSSPVLFMSTTVA---RFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEIGQAMKAGDQEL-AAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLK 194
            R R+S   F +   A   R    G + + R + ++ + ++AH+ AR+   E +ASV R+  L+  R      RDAAL  RKALS +IG+AMK G  E   AA KAEV                             NLLD A P+G  + +N +V EW TD+ K
Sbjct:   15 RGRASSARFSAVADAVSTRPSAAGVSLELRTLKDHADTVKAHVRARQGSEETVASVDRMVALTEQRAAAQRERDAALSTRKALSGDIGKAMKTGAAEADVAALKAEVAASADVAEGAEATMAALEEEANALFAALPNLLDDATPDGAGETENVVVAEWGTDSRK 178          
BLAST of mRNA_H-akashiwo_Contig1003.2.1 vs. uniprot
Match: A0A8J2SSA0_9STRA (Serine--tRNA ligase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSA0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.720e-8
Identity = 48/146 (32.88%), Postives = 67/146 (45.89%), Query Frame = 0
Query:   49 ARFDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEIGQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNTDNLK 194
            AR    G A + R + +N + ++AH+AAR    + + SV  I EL+  R  L   RDAAL  RK LS  IG+A+K G+     A KA+V                             N+L    P+G D+  N ++REW TD  K
Sbjct:  111 ARPSAAGVALELRSLKDNADVVKAHVAARGGSDDAIESVDAIVELNTKRASLQKDRDAALATRKKLSGTIGKAIKNGED--VDALKAQVAEAGATADAASEQMDSIETEALTLLEALPNVLSDVTPDGRDESDNVVLREWGTDQRK 254          
BLAST of mRNA_H-akashiwo_Contig1003.2.1 vs. uniprot
Match: A0A838MLN8_9SPHN (Serine--tRNA ligase n=1 Tax=Sphingomonadales bacterium TaxID=1978525 RepID=A0A838MLN8_9SPHN)

HSP 1 Score: 55.8 bits (133), Expect = 1.340e-5
Identity = 49/133 (36.84%), Postives = 55/133 (41.35%), Query Frame = 0
Query:   58 YDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARRELIGRRDAALGVRKALSAEIGQAMKAGDQELAAAKKAEVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLDAAVPEGDDDGQNELVREWNT 190
            +D R + ENP+   A LA R  G E  A    I  L  ARR +  R   A   R   S  IG AM  GDQ+ AAA KAEV                             NL DAAVPEG D+  N  V  W T
Sbjct:    2 HDIRLIRENPQSFDAGLARR--GVEPQADA--ILALDTARRAVATRMQEAQSRRNEASKAIGAAMGRGDQDAAAALKAEVATLKDVLPALEAEERELTANLHDALARHPNLPDAAVPEGTDEADNVEVSRWGT 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig1003.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S3Y0F1_HETAK1.320e-94100.00Serine--tRNA ligase n=1 Tax=Heterosigma akashiwo T... [more]
F0Y990_AURAN2.800e-1034.15Serine--tRNA ligase n=1 Tax=Aureococcus anophageff... [more]
A0A8J2SSA0_9STRA6.720e-832.88Serine--tRNA ligase n=1 Tax=Pelagomonas calceolata... [more]
A0A838MLN8_9SPHN1.340e-536.84Serine--tRNA ligase n=1 Tax=Sphingomonadales bacte... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 130..164
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..219
IPR015866Serine-tRNA synthetase, type1, N-terminalPFAMPF02403Seryl_tRNA_Ncoord: 59..168
e-value: 9.0E-17
score: 61.3
IPR042103Serine-tRNA synthetase, type1, N-terminal domain superfamilyGENE3D1.10.287.40coord: 58..166
e-value: 7.2E-16
score: 60.4
IPR010978Class I and II aminoacyl-tRNA synthetase, tRNA-binding armSUPERFAMILY46589tRNA-binding armcoord: 59..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig1003contigH-akashiwo_Contig1003:108067..114446 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig1003.2.1mRNA_H-akashiwo_Contig1003.2.1Heterosigma akashiwo CCMP452mRNAH-akashiwo_Contig1003 107999..131533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-akashiwo_Contig1003.2.1 ID=prot_H-akashiwo_Contig1003.2.1|Name=mRNA_H-akashiwo_Contig1003.2.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=220bp
MVLSKVVFVVMVSAFLSATVRNFAYGFTTRTGLGRFRSSPVLFMSTTVAR
FDPDGAAYDARFVAENPEGIRAHLAARRAGAEQLASVGRIEELSGARREL
IGRRDAALGVRKALSAEIGQAMKAGDQELAAAKKAEVEAAKGEAEAAEGR
LSEIEEELTALFDSLPNLLDAAVPEGDDDGQNELVREWNTDNLKRVRSTS
GMTRSQPSWAGSCPRARPG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015866Ser-tRNA-synth_1_N
IPR042103SerRS_1_N_sf
IPR010978tRNA-bd_arm