mRNA_H-akashiwo_Contig999.4.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig999.4.1
Unique NamemRNA_H-akashiwo_Contig999.4.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A7S4DD78_HETAK (Hypothetical protein n=4 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DD78_HETAK)

HSP 1 Score: 612 bits (1579), Expect = 1.140e-220
Identity = 299/312 (95.83%), Postives = 310/312 (99.36%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANFERH 936
            MVAVYVDDLVISGSSQA+VSEFKQSLASKY+LTDQGELTQILGIKVVRDKRN+CFHLSQTSFIKDALAKFGLDYLPAC+TP+DHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRA+SD+DFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEY+ALRSAVKDIMWLRSLL EMGCPQH+PTPVVEDNSACVEWAND+LVNKRNRHFHVSYHLAKEQVSLGTIRMF+IKTHDQVADILTKALNAANFERH
Sbjct:   32 MVAVYVDDLVISGSSQAVVSEFKQSLASKYSLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPLDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAFSDSDFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYLALRSAVKDIMWLRSLLEEMGCPQHEPTPVVEDNSACVEWANDMLVNKRNRHFHVSYHLAKEQVSLGTIRMFYIKTHDQVADILTKALNAANFERH 343          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A7S3Y6S2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6S2_HETAK)

HSP 1 Score: 300 bits (768), Expect = 1.270e-98
Identity = 148/151 (98.01%), Postives = 150/151 (99.34%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYL 453
            MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRN+CFHLSQTSFIKDALAKFGLDYLPAC+TPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAF VHKLQRTQINPEPKHFEAVQRAFRYL
Sbjct:  118 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNKCFHLSQTSFIKDALAKFGLDYLPACKTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFTVHKLQRTQINPEPKHFEAVQRAFRYL 268          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK)

HSP 1 Score: 263 bits (671), Expect = 6.320e-77
Identity = 132/310 (42.58%), Postives = 197/310 (63.55%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELS--DANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAAN 924
            +++VYVDD+V++ S ++ +S  K++++  YN++D GE+  ILGIKV RD+  R   LSQ SFI++A  KF +        P++  +D+         LS  +A  +RS+VGT+ W+A WT PE+A+++H L +   +P      A     RYL  T+ + + LGG L L AY+DADFC++R  G+S +G+ +FLG +PI+WSS++Q  VT +T EAEY++LR+AV D+MWL+ LL  +G  Q    P+ EDN AC+ WAND  V+K  RH HVSYH  KE V    I + ++ T  Q+AD+ TK L+  N
Sbjct:  677 LISVYVDDIVLASSDKSELSRIKKAISLGYNVSDMGEIESILGIKVQRDRTARTITLSQHSFIEEACEKFQVRSYEPVTNPVNKGIDVNINTDTSRRLSTFEAKKFRSLVGTVNWLALWTFPEVAYSIHTLSKRFTSPSANCLAASYHLLRYLWWTEDKGVTLGGPLNLTAYADADFCSERHKGRSRSGFAIFLGFSPIIWSSRMQHCVTRNTTEAEYVSLRNAVTDVMWLKRLLESLGYKQ-GCVPIYEDNKACITWANDETVSKSARHIHVSYHYTKEMVQSKEIEVKYVDTKHQIADVFTKPLDFNN 985          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A4S4K468_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A4S4K468_9APHY)

HSP 1 Score: 212 bits (540), Expect = 7.760e-62
Identity = 119/309 (38.51%), Postives = 177/309 (57.28%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPT--PGFKAELSDANL--YRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            ++A++VDD  I+GSS  ++SE+K+ +  KY LTD GE++ +LGIKV RD+  R   LSQ ++I   LA+F    L     P+D  + LT +  P   A+++      YR  +G+L + A  TRP+++FA+  L +   NP   H+EAV+R FRYL GT++  L+ GG    L  Y DAD  +      ++TGY+  +    + WSSK Q  VT ST EAEY+A   A K+ MW+R LL E+  P   PT +  D+ + +    D   + R +H  + YH  +  V  GT+R+ +  T+D  AD LTKAL
Sbjct:  140 VLAIHVDDCAITGSSTPLISEYKRRIGEKYPLTDLGEVSWLLGIKVARDREARTLSLSQHAYIDSILARFNFTDLKPSSIPMDPNLQLTKSQCPTSLADIARMRKIPYREAIGSLMYAAVGTRPDISFAISTLAQFSQNPGWTHWEAVKRVFRYLLGTKNLVLQYGGVQRGLEGYVDADGASQE-HRHAITGYVFLVDGGAVSWSSKKQELVTLSTTEAEYVAATHAAKEAMWIRRLLGEVFRPLDGPTTLYSDSQSAIALTKDGQYHARTKHIDIRYHFIRYVVEAGTLRLIYCPTNDMTADTLTKAL 447          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A1M2VSW8_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2VSW8_TRAPU)

HSP 1 Score: 209 bits (531), Expect = 9.870e-61
Identity = 117/309 (37.86%), Postives = 180/309 (58.25%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANL----YRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG-DLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            ++A++VDD +I+GSS  +++E+K+ LA+KY LTD G ++ +LGIKV RD       LSQ ++I+  + +F  D L    TP+D T  L+ +   ++    A +    Y+  +G+L + A  TRP++AFAV  L +   NP   H+EAV+R FRYL GT++ SL  GG    L  Y DAD  +     +++TGY+  +    I WSSK Q  VT ST E+EY+A   A K+ +WLR L+ E+  P  +PT +  D+ + +    D   + R +H  + YH  +  +  G+IR+ +  T D  AD+LTKAL
Sbjct:  118 ILAIHVDDCLITGSSTRLLAEYKRQLAAKYKLTDLGPVSWLLGIKVSRDLSAHTLALSQHAYIEAIITRFNFDDLKPISTPMDPTSQLSKSQCPESAADVARMRRVPYKEAIGSLMYAAMGTRPDIAFAVSTLAQFSQNPGWVHWEAVKRVFRYLLGTKTLSLIYGGGQRGLEGYVDADGASQE-HRRAITGYVFLVDGGAISWSSKKQELVTLSTAESEYVAATHAAKEAIWLRRLIGEVFRPLSEPTTLHSDSQSAIALTVDGSYHARTKHIDIRYHFIRYSIDAGSIRLLYCPTADMTADVLTKAL 425          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A6A3JMT1_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JMT1_9STRA)

HSP 1 Score: 204 bits (519), Expect = 2.150e-59
Identity = 114/309 (36.89%), Postives = 171/309 (55.34%), Query Frame = 1
Query:    4 VAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLT----PTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV--LRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKAL 912
            + +YVDDL+I+    A ++  K  +   + L D G +  ILGI+V  D   +   L Q  +I D + +F         TPID ++ +T    P    +  +     +RS++G+L+++A  TRP++A AV +L R   NP  +H++A  +  RYLKGT++  +  GG +   L AYSDAD+ +DR D +SV+G +L L  AP+VW +  Q  V  ST EAEYMAL   VK+ MW R LL  +G  Q   T + EDN   +  A +     R +H  + YH  +E++  G I + +I T +QVAD LTK L
Sbjct:   67 ICLYVDDLLIASPDMATINTVKDKIRHSFKLKDLGAVRYILGIEVHHDIAEKTLMLRQPRYIDDLVQRFNQTEAHPSVTPIDLSLPVTKEDQPETQEEMTIMRGKPFRSIIGSLSYLAGSTRPDIAVAVSRLSRYLENPGIRHWDAAIKIVRYLKGTRNYGVHFGGKMSPELIAYSDADWGSDRDDRRSVSGTVLMLFGAPVVWKTGYQKTVALSTTEAEYMALTMCVKECMWARLLLKNLGLKQEGATTIHEDNQGAIALARNTGYQSRTKHISIRYHYLRERIIAGDIELKYINTKEQVADFLTKGL 375          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A8H6Z6T5_9AGAR (Polyprotein n=1 Tax=Mycena venus TaxID=2733690 RepID=A0A8H6Z6T5_9AGAR)

HSP 1 Score: 214 bits (544), Expect = 6.230e-59
Identity = 112/312 (35.90%), Postives = 179/312 (57.37%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDA---NLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANF 927
            +VAV+VDD+ +   +   +++ K  LAS++N+TD G LTQILG+++ R+  +    L+Q ++    L   G+       TP+DH V LT  P     + D    + Y S +G L ++A  TRP+LA+AV  L +    P  +H  A++  FRYL+GT S  +   G+  ++ Y DAD+ ND  D +S++GY+ F G API WSS+ Q  V  ST+EAEYMAL     +++WLR L +E+G     PT    DN + + +A + + + R++H  + +H  +E+V+   + +    + D +AD+LTKAL    F
Sbjct:  886 IVAVHVDDMTLFAHTNGELTQLKGELASQFNVTDLGPLTQILGMEITRNDSDGSIQLTQANYALRVLESVGMHNCKPVSTPLDHNVKLTALPDGDPRIGDTAFRHTYLSSLGKLMYLAVGTRPDLAYAVQHLSQFSQRPAAEHMSALKHVFRYLRGTYSLGILFRGNGDIKIYCDADWANDIADRRSISGYVSFFGSAPISWSSRKQPTVALSTMEAEYMALAKTTCEVLWLRELASELGLTPDGPT---SDNQSAICFAANPVFHARSKHIDIRHHFVRERVASNEVILTHCASEDNLADMLTKALPRPQF 1194          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A507DR08_9FUNG (DNA-directed DNA polymerase (Fragment) n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DR08_9FUNG)

HSP 1 Score: 211 bits (538), Expect = 9.270e-59
Identity = 121/324 (37.35%), Postives = 189/324 (58.33%), Query Frame = 1
Query:    4 VAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHT------VDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDLV-LRAYSDADFCNDRVDGKSVTGYILFLGDA-PIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQH-----DPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANFERH 936
            ++VYVDDL+I   +++ +S  K SL +++N T+ G++   LG++V RD      +L Q S++ D L +FG+       TP+D T      V+ T T     E      YR +VG+L ++   TRP++A AV  L R   NP P+H +A +R  RYL+GT + SL +GG+ V L  YSDAD+ N+ +D +S+TGY+  +G+A P+ W+SK Q  V  S+ EAEYMAL  A ++  WLRSLL E+  P++       T + +DN +C+  A + + + R +H  + +H  ++ V    I + ++ T + VAD LTK L A  F+ H
Sbjct:  417 ISVYVDDLLIFAKNKSEMSSIKASLHNEFNTTNLGKVNHYLGMRVRRDYTRHVIYLDQESYVNDILERFGMQDCKPVNTPMDQTKLEPYEVENTKTSPNPQE----GEYREIVGSLMYLMICTRPDIAVAVSMLSRFASNPSPQHLQAAKRVLRYLRGTSTYSLCIGGNNVTLHGYSDADWGNNIIDRRSITGYLFCIGNAGPVTWASKRQPTVALSSTEAEYMALSFATQETTWLRSLLQELQIPEYLDENARSTTIYKDNQSCISLAMNPVHHARTKHIDIRHHFIRDHVD-KEIHLEYLPTAEMVADSLTKPLPAPAFKYH 735          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: A0A6A3VCN8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3VCN8_9STRA)

HSP 1 Score: 202 bits (513), Expect = 9.790e-59
Identity = 111/312 (35.58%), Postives = 176/312 (56.41%), Query Frame = 1
Query:    1 MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANL----YRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGGDL--VLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNA 918
            +V +YVDD++I+   +A+++  K  +A K+ + D G    IL I++  D   R   +SQ ++ +  + KFG +    C TP++  V LT     + E   A +    YRS+VG+L ++A  TRP+++ AV KL R   NP  KH++A  +  RYL  T+   +   G L   L AYSDAD+  +R D +SV+G +L L  AP+VW S  Q  V  S+ EAEYMAL   VK+ +W+R LL ++G  Q   T + EDN   +  A ++    R +H  + YH  +E+V +  + +  + T +Q+AD +TK L++
Sbjct:   49 IVRLYVDDMLIASRQKAVIASEKAGIAEKFRIKDMGRARFILSIEIDYDIERRTLGISQKAYTESIIKKFGQENTKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQLEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVINEVELESVDTKNQLADFMTKGLSS 360          
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Match: UPI000DEDCB7A (uncharacterized protein LOC112770502 n=2 Tax=Arachis TaxID=3817 RepID=UPI000DEDCB7A)

HSP 1 Score: 202 bits (514), Expect = 1.020e-58
Identity = 112/311 (36.01%), Postives = 188/311 (60.45%), Query Frame = 1
Query:   10 VYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDKRNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSDANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRYLKGTQSESLRLGG--DLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWSSKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVE---DNSACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADILTKALNAANF 927
            VYVDD++++G+S+  +++  Q L SK++L D GEL   LGI+V +        LSQT +I D L K  +    A  TP+   + LT T G   E    +LYRS+VG+L ++   TRP++AF ++K+ +    P  KH++AV+R  RYL+GT++  L L    +L+L  Y+D+D+ +D  D KS  GY +  G  P+ W SK Q AV+ S+ EAEY  + + V +++W+R+LL E+    H   P ++   DN+  V  + + +++ R++HF +  HL ++ V+ G +++  I    Q+AD++TKA++++ F
Sbjct:   68 VYVDDIIVTGTSKEAIAKLVQQLHSKFSLRDMGELKYFLGIEVTQTSCGGLL-LSQTKYINDLLKKANMGDSKAAATPMTSNLKLTSTDGVPFE--HVSLYRSVVGSLQYLTV-TRPKIAFCINKVCQFMQAPLDKHWKAVKRILRYLQGTRTMGLHLRKPTELILTGYTDSDWASDIEDHKSTAGYCVMFGPNPVSWCSKKQAAVSRSSTEAEYRGIANVVAELLWIRNLLGEI----HILVPTLKVYCDNAGAVLMSANPVLHSRSKHFEIDLHLVRDHVAKGRVQIHHIPGDTQIADVMTKAVSSSRF 370          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig999.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4DD78_HETAK1.140e-22095.83Hypothetical protein n=4 Tax=Heterosigma akashiwo ... [more]
A0A7S3Y6S2_HETAK1.270e-9898.01Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S3Y1P1_HETAK6.320e-7742.58Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4S4K468_9APHY7.760e-6238.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1M2VSW8_TRAPU9.870e-6137.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3JMT1_9STRA2.150e-5936.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H6Z6T5_9AGAR6.230e-5935.90Polyprotein n=1 Tax=Mycena venus TaxID=2733690 Rep... [more]
A0A507DR08_9FUNG9.270e-5937.35DNA-directed DNA polymerase (Fragment) n=1 Tax=Pow... [more]
A0A6A3VCN8_9STRA9.790e-5935.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI000DEDCB7A1.020e-5836.01uncharacterized protein LOC112770502 n=2 Tax=Arach... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig999contigH-akashiwo_Contig999:245158..246093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo132654
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size936
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.84e-55
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size936
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388071.1608346-CDS-H-akashiwo_Contig999:245157..2460931681388071.1608346-CDS-H-akashiwo_Contig999:245157..246093Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig999 245158..246093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig999.4.1prot_H-akashiwo_Contig999.4.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig999 245158..246093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig999.4.1

>prot_H-akashiwo_Contig999.4.1 ID=prot_H-akashiwo_Contig999.4.1|Name=mRNA_H-akashiwo_Contig999.4.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=312bp
MVAVYVDDLVISGSSQAIVSEFKQSLASKYNLTDQGELTQILGIKVVRDK
RNRCFHLSQTSFIKDALAKFGLDYLPACRTPIDHTVDLTPTPGFKAELSD
ANLYRSMVGTLAWVANWTRPELAFAVHKLQRTQINPEPKHFEAVQRAFRY
LKGTQSESLRLGGDLVLRAYSDADFCNDRVDGKSVTGYILFLGDAPIVWS
SKLQGAVTTSTVEAEYMALRSAVKDIMWLRSLLAEMGCPQHDPTPVVEDN
SACVEWANDLLVNKRNRHFHVSYHLAKEQVSLGTIRMFFIKTHDQVADIL
TKALNAANFERH
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mRNA from alignment at H-akashiwo_Contig999:245158..246093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig999.4.1 ID=mRNA_H-akashiwo_Contig999.4.1|Name=mRNA_H-akashiwo_Contig999.4.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=936bp|location=Sequence derived from alignment at H-akashiwo_Contig999:245158..246093+ (Heterosigma akashiwo CCMP452)
ATGGTTGCGGTTTACGTCGATGATTTGGTGATCAGTGGCAGCTCTCAAGC TATTGTCTCTGAGTTTAAGCAGTCTCTCGCATCCAAGTACAATCTCACTG ATCAAGGGGAACTCACCCAAATCCTTGGCATCAAGGTTGTTCGCGATAAA CGGAACAGGTGTTTCCATCTTTCCCAGACCTCTTTCATCAAGGACGCACT GGCCAAGTTCGGGCTCGATTATCTTCCTGCGTGCAGAACGCCTATTGATC ACACTGTGGATCTTACACCTACACCCGGGTTTAAAGCGGAGCTCTCCGAT GCGAACTTATACAGGTCTATGGTTGGGACGCTGGCCTGGGTTGCGAACTG GACAAGACCGGAGCTTGCTTTTGCGGTCCACAAGCTTCAGCGTACTCAAA TTAATCCGGAGCCCAAGCATTTTGAAGCAGTCCAGCGTGCATTTCGATAC CTCAAGGGCACTCAGTCTGAGTCCCTGCGGCTGGGTGGTGATCTGGTGCT ACGAGCTTATTCTGATGCAGATTTCTGTAATGACCGTGTTGATGGAAAGT CAGTCACCGGCTATATTCTCTTTTTGGGTGATGCGCCTATTGTCTGGTCT TCAAAGCTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAGTATAT GGCTCTCCGTTCAGCGGTTAAAGACATCATGTGGCTTCGCTCTCTTCTTG CTGAGATGGGGTGTCCTCAGCATGATCCCACTCCTGTTGTGGAAGACAAC AGTGCCTGTGTTGAGTGGGCCAATGACTTGTTGGTTAATAAAAGAAATAG ACATTTCCATGTGTCTTATCATCTTGCTAAGGAGCAAGTAAGCCTTGGCA CTATCAGGATGTTTTTCATTAAAACTCATGATCAAGTAGCTGATATTCTG ACCAAGGCCCTAAATGCAGCTAATTTTGAGAGGCAC
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Coding sequence (CDS) from alignment at H-akashiwo_Contig999:245158..246093+

>mRNA_H-akashiwo_Contig999.4.1 ID=mRNA_H-akashiwo_Contig999.4.1|Name=mRNA_H-akashiwo_Contig999.4.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=936bp|location=Sequence derived from alignment at H-akashiwo_Contig999:245158..246093+ (Heterosigma akashiwo CCMP452)
ATGGTTGCGGTTTACGTCGATGATTTGGTGATCAGTGGCAGCTCTCAAGC
TATTGTCTCTGAGTTTAAGCAGTCTCTCGCATCCAAGTACAATCTCACTG
ATCAAGGGGAACTCACCCAAATCCTTGGCATCAAGGTTGTTCGCGATAAA
CGGAACAGGTGTTTCCATCTTTCCCAGACCTCTTTCATCAAGGACGCACT
GGCCAAGTTCGGGCTCGATTATCTTCCTGCGTGCAGAACGCCTATTGATC
ACACTGTGGATCTTACACCTACACCCGGGTTTAAAGCGGAGCTCTCCGAT
GCGAACTTATACAGGTCTATGGTTGGGACGCTGGCCTGGGTTGCGAACTG
GACAAGACCGGAGCTTGCTTTTGCGGTCCACAAGCTTCAGCGTACTCAAA
TTAATCCGGAGCCCAAGCATTTTGAAGCAGTCCAGCGTGCATTTCGATAC
CTCAAGGGCACTCAGTCTGAGTCCCTGCGGCTGGGTGGTGATCTGGTGCT
ACGAGCTTATTCTGATGCAGATTTCTGTAATGACCGTGTTGATGGAAAGT
CAGTCACCGGCTATATTCTCTTTTTGGGTGATGCGCCTATTGTCTGGTCT
TCAAAGCTTCAGGGTGCTGTCACTACCTCTACTGTGGAAGCTGAGTATAT
GGCTCTCCGTTCAGCGGTTAAAGACATCATGTGGCTTCGCTCTCTTCTTG
CTGAGATGGGGTGTCCTCAGCATGATCCCACTCCTGTTGTGGAAGACAAC
AGTGCCTGTGTTGAGTGGGCCAATGACTTGTTGGTTAATAAAAGAAATAG
ACATTTCCATGTGTCTTATCATCTTGCTAAGGAGCAAGTAAGCCTTGGCA
CTATCAGGATGTTTTTCATTAAAACTCATGATCAAGTAGCTGATATTCTG
ACCAAGGCCCTAAATGCAGCTAATTTTGAGAGGCAC
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