mRNA_H-akashiwo_Contig996.5.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig996.5.1
Unique NamemRNA_H-akashiwo_Contig996.5.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig996.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig996contigH-akashiwo_Contig996:264746..265083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size211
Hectar predicted targeting categorymitochondrion
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388071.0904303-CDS-H-akashiwo_Contig996:264745..2649181681388071.0904303-CDS-H-akashiwo_Contig996:264745..264918Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig996 264746..264918 +
1681388071.0998912-CDS-H-akashiwo_Contig996:265045..2650821681388071.0998912-CDS-H-akashiwo_Contig996:265045..265082Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig996 265046..265082 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig996.5.1prot_H-akashiwo_Contig996.5.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig996 264746..265082 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig996.5.1

>prot_H-akashiwo_Contig996.5.1 ID=prot_H-akashiwo_Contig996.5.1|Name=mRNA_H-akashiwo_Contig996.5.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=70bp
LRISILTKGRTFAKDATKNTKVYFAICRTKGQQLSVRHKLQPRFPLSWTG
YTLPKRSSLLLKSSLENMEM
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mRNA from alignment at H-akashiwo_Contig996:264746..265083+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig996.5.1 ID=mRNA_H-akashiwo_Contig996.5.1|Name=mRNA_H-akashiwo_Contig996.5.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=338bp|location=Sequence derived from alignment at H-akashiwo_Contig996:264746..265083+ (Heterosigma akashiwo CCMP452)
TTGAGAATATCCATCTTGACAAAAGGAAGAACCTTTGCTAAGGACGCAAC
AAAAAATACGAAGGTTTACTTCGCCATATGTCGAACCAAAGGCCAGCAAC
TATCAGTACGCCACAAGCTGCAACCAAGGTTCCCTCTGTCATGGACAGGC
TATACTTTACCCAAAAGATCAAGGTAGTATCACTTCTATTCAATGAATCA
GTTGCAAAACTGCAACAACTATCCTGGCCATTCAGTTTTTGCTTGAAAAA
CAATGTCCTTCTCCACTTACCCCTCCCCCATGCCATCACTATGTCAGCAG
TTTATTGCTGAAATCAAGCTTGGAAAACATGGAGATGA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig996:264746..265083+

>mRNA_H-akashiwo_Contig996.5.1 ID=mRNA_H-akashiwo_Contig996.5.1|Name=mRNA_H-akashiwo_Contig996.5.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=210bp|location=Sequence derived from alignment at H-akashiwo_Contig996:264746..265083+ (Heterosigma akashiwo CCMP452)
TTGAGAATATCCATCTTGACAAAAGGAAGAACCTTTGCTAAGGACGCAAC
AAAAAATACGAAGGTTTACTTCGCCATATGTCGAACCAAAGGCCAGCAAC
TATCAGTACGCCACAAGCTGCAACCAAGGTTCCCTCTGTCATGGACAGGC
TATACTTTACCCAAAAGATCAAGTTTATTGCTGAAATCAAGCTTGGAAAA
CATGGAGATG
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