mRNA_H-akashiwo_Contig994.8.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig994.8.1
Unique NamemRNA_H-akashiwo_Contig994.8.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A6V1QFH4_HETAK (Alanine transaminase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFH4_HETAK)

HSP 1 Score: 189 bits (479), Expect = 6.960e-55
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = -2
Query:    2 MEFFRNAFSRGSPESSSMYSTSPDEPQHTTRKDAPVTASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 286
            MEFFRNAFSRGSPESSSMYSTSPDEPQHTTRKDAPVTASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL
Sbjct:    1 MEFFRNAFSRGSPESSSMYSTSPDEPQHTTRKDAPVTASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 95          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A6U1PWD6_9STRA (Alanine transaminase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PWD6_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 8.040e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -2
Query:    2 SLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 172
            S L+ DT+NQ I+ AEYAVRG +L+RAMEL+KELD  K  LPF+++I CNIGNP  L
Sbjct:   35 SALSSDTINQRIIRAEYAVRGAVLNRAMELQKELDAGKK-LPFDEIISCNIGNPHEL 90          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A7S4D709_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D709_HETAK)

HSP 1 Score: 72.4 bits (176), Expect = 9.880e-14
Identity = 33/57 (57.89%), Postives = 47/57 (82.46%), Query Frame = -2
Query:    2 SLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 172
            SLL  +T++Q++++AEYAVRG ILDRAMEL+ +L     +LPF++++ CNIGNPQAL
Sbjct:   35 SLLDSNTISQSVIDAEYAVRGPILDRAMELEADL-AAGVDLPFDEIVSCNIGNPQAL 90          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A0C9SAS0_9SPER (Alanine transaminase n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9SAS0_9SPER)

HSP 1 Score: 72.4 bits (176), Expect = 4.530e-12
Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = -2
Query:    2 ASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 175
            A+ +T DT+N  +V  EYAVRGEI+  A  L++EL +++S+LPF ++I CNIGNPQ+L
Sbjct:   42 ATSVTVDTINPKVVKCEYAVRGEIVTHAQRLQQELQSKQSSLPFNEIIYCNIGNPQSL 99          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: K8FES7_9CHLO (Alanine transaminase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FES7_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 8.230e-12
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = -2
Query:    2 LTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 166
            +  +T+NQN++ AEYAVRG I+ RA EL  +L    S+LPFED+++CNIGNPQ+L
Sbjct:    5 VNANTINQNVLTAEYAVRGPIVVRAGELALQLKKDPSSLPFEDIVLCNIGNPQSL 59          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A7J0FF12_9ERIC (Alanine aminotransferas n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0FF12_9ERIC)

HSP 1 Score: 68.2 bits (165), Expect = 1.450e-11
Identity = 35/84 (41.67%), Postives = 56/84 (66.67%), Query Frame = -2
Query:    2 SPESSSMYSTSPDEPQHTTRKDAPVTASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 253
            SP+S+  + TS + P  ++  D+   AS LT +T+N  ++  EYAVRGEI+  A +L++EL     + PF++++ CNIGNPQ+L
Sbjct:   39 SPQSAIRFLTSLNAPSPSSSPDSM--ASSLTLETINPKVLKCEYAVRGEIVTLAQQLQEELKVNPGSHPFDEILYCNIGNPQSL 120          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A5J4Y956_9CHLO (Alanine transaminase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y956_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 2.140e-11
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = -2
Query:    2 VTASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 181
            V +S LTG+T++ +++ AEYAVRG+I+ RA E+ KEL   K   PF D++MCNIGNPQAL
Sbjct:   52 VASSKLTGETISPHVMKAEYAVRGDIVVRAGEIGKELKKGKK-FPFTDLVMCNIGNPQAL 110          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A7S4ECR5_9STRA (Alanine transaminase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECR5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.300e-11
Identity = 30/58 (51.72%), Postives = 43/58 (74.14%), Query Frame = -2
Query:    2 ASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 175
            A+ LT D +N  +V AEYAVRG+ILDRA E+++++       PF++++ CNIGNPQAL
Sbjct:   15 AAQLTIDAVNPKVVEAEYAVRGKILDRAGEIERDMAENPDKWPFKEIVRCNIGNPQAL 72          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A5J9V4M5_9POAL (Alanine transaminase n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9V4M5_9POAL)

HSP 1 Score: 69.3 bits (168), Expect = 5.860e-11
Identity = 29/58 (50.00%), Postives = 43/58 (74.14%), Query Frame = -2
Query:    2 ASLLTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 175
            A+++  + LN  ++  EYAVRGEI+  A  L+++L TQ  +LPFED++ CNIGNPQ+L
Sbjct:    2 AAVVAVENLNPKVLKCEYAVRGEIVIHAQRLQQQLQTQPGSLPFEDILYCNIGNPQSL 59          
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Match: A0A1D1YA18_9ARAE (Alanine aminotransferase 2, mitochondrial (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YA18_9ARAE)

HSP 1 Score: 65.5 bits (158), Expect = 9.320e-11
Identity = 26/55 (47.27%), Postives = 41/55 (74.55%), Query Frame = -2
Query:    2 LTGDTLNQNIVNAEYAVRGEILDRAMELKKELDTQKSNLPFEDVIMCNIGNPQAL 166
            +T DT+N  ++  EYAVRGEI+  A  L++EL ++  + PF++++ CNIGNPQ+L
Sbjct:   58 VTVDTINPKVIKCEYAVRGEIVTHAQRLQQELQSKPGSHPFDEILYCNIGNPQSL 112          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig994.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1QFH4_HETAK6.960e-55100.00Alanine transaminase n=1 Tax=Heterosigma akashiwo ... [more]
A0A6U1PWD6_9STRA8.040e-1463.16Alanine transaminase n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S4D709_HETAK9.880e-1457.89Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0C9SAS0_9SPER4.530e-1253.45Alanine transaminase n=2 Tax=Araucariaceae TaxID=2... [more]
K8FES7_9CHLO8.230e-1256.36Alanine transaminase n=1 Tax=Bathycoccus prasinos ... [more]
A0A7J0FF12_9ERIC1.450e-1141.67Alanine aminotransferas n=1 Tax=Actinidia rufa Tax... [more]
A0A5J4Y956_9CHLO2.140e-1156.67Alanine transaminase n=1 Tax=Trebouxia sp. A1-2 Ta... [more]
A0A7S4ECR5_9STRA5.300e-1151.72Alanine transaminase n=1 Tax=Pelagomonas calceolat... [more]
A0A5J9V4M5_9POAL5.860e-1150.00Alanine transaminase n=1 Tax=Eragrostis curvula Ta... [more]
A0A1D1YA18_9ARAE9.320e-1147.27Alanine aminotransferase 2, mitochondrial (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig994contigH-akashiwo_Contig994:303245..303678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size434
Hectar predicted targeting categorymitochondrion
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388070.4732847-UTR-H-akashiwo_Contig994:303244..3032731681388070.4732847-UTR-H-akashiwo_Contig994:303244..303273Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig994 303245..303273 +
1681388070.5010276-UTR-H-akashiwo_Contig994:303597..3036781681388070.5010276-UTR-H-akashiwo_Contig994:303597..303678Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig994 303598..303678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388070.4880893-CDS-H-akashiwo_Contig994:303273..3035971681388070.4880893-CDS-H-akashiwo_Contig994:303273..303597Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig994 303274..303597 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig994.8.1prot_H-akashiwo_Contig994.8.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig994 303274..303597 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig994.8.1

>prot_H-akashiwo_Contig994.8.1 ID=prot_H-akashiwo_Contig994.8.1|Name=mRNA_H-akashiwo_Contig994.8.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=108bp
MMTSSKGRLDFCVSSSFFSSIARSRISPLTAYSALTMFWLRVSPVRSEAV
TGASFLVVCCGSSGDVEYIELLSGLPLENAFLKNSILSSHAQLSSYYTTA
GSLLFRL*
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mRNA from alignment at H-akashiwo_Contig994:303245..303678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig994.8.1 ID=mRNA_H-akashiwo_Contig994.8.1|Name=mRNA_H-akashiwo_Contig994.8.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=434bp|location=Sequence derived from alignment at H-akashiwo_Contig994:303245..303678+ (Heterosigma akashiwo CCMP452)
AGAGGGCTTGGGGGTTTCCAATATTGCACATGATGACATCCTCAAAAGGA AGGTTGGATTTCTGTGTATCTAGCTCCTTTTTTAGTTCCATCGCCCGGTC CAGAATCTCTCCTCTCACCGCATATTCTGCATTGACAATGTTTTGGTTGA GGGTGTCGCCTGTAAGGAGCGAGGCAGTGACTGGCGCATCCTTTCTGGTT GTGTGCTGTGGTTCATCGGGTGACGTTGAATACATCGAGCTGCTCTCGGG GCTCCCTCTTGAAAATGCGTTTCTGAAAAACTCCATTTTGTCTTCGCACG CTCAGTTGTCGTCGTATTATACTACTGCTGGTAGCCTTCTGTTCAGGTTA TGATTGTCAGGACAATCTGAGGGAATCAACTCTGCAGGTGGTATACTCTG GACGAGCTTCCCTATTTACGTAAAATGTTCGCAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig994:303245..303678+

>mRNA_H-akashiwo_Contig994.8.1 ID=mRNA_H-akashiwo_Contig994.8.1|Name=mRNA_H-akashiwo_Contig994.8.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=324bp|location=Sequence derived from alignment at H-akashiwo_Contig994:303245..303678+ (Heterosigma akashiwo CCMP452)
ATGATGACATCCTCAAAAGGAAGGTTGGATTTCTGTGTATCTAGCTCCTT
TTTTAGTTCCATCGCCCGGTCCAGAATCTCTCCTCTCACCGCATATTCTG
CATTGACAATGTTTTGGTTGAGGGTGTCGCCTGTAAGGAGCGAGGCAGTG
ACTGGCGCATCCTTTCTGGTTGTGTGCTGTGGTTCATCGGGTGACGTTGA
ATACATCGAGCTGCTCTCGGGGCTCCCTCTTGAAAATGCGTTTCTGAAAA
ACTCCATTTTGTCTTCGCACGCTCAGTTGTCGTCGTATTATACTACTGCT
GGTAGCCTTCTGTTCAGGTTATGA
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