mRNA_H-akashiwo_Contig99.9.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig99.9.1
Unique NamemRNA_H-akashiwo_Contig99.9.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig99.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig99contigH-akashiwo_Contig99:485289..485789 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size502
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388068.7118804-CDS-H-akashiwo_Contig99:485288..4856391681388068.7118804-CDS-H-akashiwo_Contig99:485288..485639Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig99 485289..485639 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388068.723173-UTR-H-akashiwo_Contig99:485639..4857891681388068.723173-UTR-H-akashiwo_Contig99:485639..485789Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig99 485640..485789 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig99.9.1prot_H-akashiwo_Contig99.9.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig99 485289..485639 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig99.9.1

>prot_H-akashiwo_Contig99.9.1 ID=prot_H-akashiwo_Contig99.9.1|Name=mRNA_H-akashiwo_Contig99.9.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=117bp
NIHLKNPKGGAAAIISFAHRSDEESCSSSILLFFSLLLLFDLCCKKERPT
PIEGHSQIRVCLLSRHRRGGWQNRGIMHPGVQQPSGLQFTATTIIHPPTT
TIAEAAASFQLLSFIE*
back to top

mRNA from alignment at H-akashiwo_Contig99:485289..485789+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig99.9.1 ID=mRNA_H-akashiwo_Contig99.9.1|Name=mRNA_H-akashiwo_Contig99.9.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=501bp|location=Sequence derived from alignment at H-akashiwo_Contig99:485289..485789+ (Heterosigma akashiwo CCMP452)
AACATTCATTTGAAAAATCCGAAAGGGGGAGCCGCAGCAATTATATCATT
TGCTCACAGAAGTGATGAAGAAAGCTGCAGCTCTTCAATCCTCCTCTTCT
TCTCCCTTCTTCTCCTCTTCGATCTTTGTTGCAAAAAAGAGCGACCCACC
CCCATTGAAGGTCACAGTCAGATCAGAGTTTGTTTGCTGTCGCGACACAG
AAGAGGAGGGTGGCAAAACAGAGGCATTATGCATCCTGGAGTGCAGCAGC
CATCTGGCCTCCAATTCACCGCCACCACTATCATCCATCCCCCCACTACT
ACCATTGCTGAAGCTGCTGCATCTTTCCAACTCCTTTCCTTCATAGAATA
ATTTGGGTCGATTAACCCTCTTAGCGGTGATGGTAAGTCTATTGCTTGAC
AATTCCGCTGTCTGTGACGAGTGGGCCGTCCCATGCAGGCGCCCCCCCGA
AGAGCACTGGTAAGCCGCGTTCCGCTCTGCCGGGACAAACACGCCGCCGC
C
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig99:485289..485789+

>mRNA_H-akashiwo_Contig99.9.1 ID=mRNA_H-akashiwo_Contig99.9.1|Name=mRNA_H-akashiwo_Contig99.9.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=351bp|location=Sequence derived from alignment at H-akashiwo_Contig99:485289..485789+ (Heterosigma akashiwo CCMP452)
AACATTCATTTGAAAAATCCGAAAGGGGGAGCCGCAGCAATTATATCATT
TGCTCACAGAAGTGATGAAGAAAGCTGCAGCTCTTCAATCCTCCTCTTCT
TCTCCCTTCTTCTCCTCTTCGATCTTTGTTGCAAAAAAGAGCGACCCACC
CCCATTGAAGGTCACAGTCAGATCAGAGTTTGTTTGCTGTCGCGACACAG
AAGAGGAGGGTGGCAAAACAGAGGCATTATGCATCCTGGAGTGCAGCAGC
CATCTGGCCTCCAATTCACCGCCACCACTATCATCCATCCCCCCACTACT
ACCATTGCTGAAGCTGCTGCATCTTTCCAACTCCTTTCCTTCATAGAATA
A
back to top