mRNA_H-akashiwo_Contig99.24.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig99.24.1
Unique NamemRNA_H-akashiwo_Contig99.24.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
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BLAST of mRNA_H-akashiwo_Contig99.24.1 vs. uniprot
Match: A0A7S3XNB1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNB1_HETAK)

HSP 1 Score: 220 bits (560), Expect = 3.040e-69
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1 
Query:    1 QVYWYNSATQRHQFDVPPEVEEKMNATNSPQKLGHLRQKASMRLKQVGDWIQYRGAHDKTFYYHETSGDFQWERPAALGPGDPVEAKADDPPGEDNTSHATAGG 312
            QVYWYNSATQRHQFDVPPEVEEKMNATNSPQKLGHLRQKASMRLKQVGDWIQYRGAHDKTFYYHETSGDFQWERPAALGPGDPVEAKADDPPGEDNTSHATAGG
Sbjct:  224 QVYWYNSATQRHQFDVPPEVEEKMNATNSPQKLGHLRQKASMRLKQVGDWIQYRGAHDKTFYYHETSGDFQWERPAALGPGDPVEAKADDPPGEDNTSHATAGG 327
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BLAST of mRNA_H-akashiwo_Contig99.24.1 vs. uniprot
Match: A0A7S2FAD8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FAD8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.480e-16
Identity = 44/86 (51.16%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    4 VYWYNSATQRHQFDVPPEVEEKMNATNSPQKLGHLR--QKASMRLKQVGDWIQYRGAHDKTFYYHETSGDFQWERPAALGPGDPVE 255
            V+WYN  TQ  Q+D P EV+   +A     K G     +K SMRLK+V DWI+Y G   KTFYY+ETS +FQWERP  L P +P E
Sbjct:  365 VFWYNHRTQSSQWDKPAEVQVAQDAKQMEAK-GEWENLKKTSMRLKRVSDWIEYHGQGGKTFYYNETSREFQWERPVDLAPPEPKE 449
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig99.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3XNB1_HETAK3.040e-69100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2FAD8_9STRA1.480e-1651.16Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig99contigH-akashiwo_Contig99:1613443..1621021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LBF5
PFAMsAnk_2,WW
Model size344
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.74e-09
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-27_004150.1
Descriptionprotein ubiquitination
Cds size342
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388069.4843829-CDS-H-akashiwo_Contig99:1613442..16136441681388069.4843829-CDS-H-akashiwo_Contig99:1613442..1613644Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig99 1613443..1613644 +
1681388069.4948287-CDS-H-akashiwo_Contig99:1620881..16210211681388069.4948287-CDS-H-akashiwo_Contig99:1620881..1621021Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig99 1620882..1621021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig99.24.1prot_H-akashiwo_Contig99.24.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig99 1613443..1621021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig99.24.1

>prot_H-akashiwo_Contig99.24.1 ID=prot_H-akashiwo_Contig99.24.1|Name=mRNA_H-akashiwo_Contig99.24.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=114bp
QVYWYNSATQRHQFDVPPEVEEKMNATNSPQKLGHLRQKASMRLKQVGDW
IQYRGAHDKTFYYHETSGDFQWERPAALGPGDPVEAKADDPPGEDNTSHA
TAGGGAGGEQHPQP
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mRNA from alignment at H-akashiwo_Contig99:1613443..1621021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig99.24.1 ID=mRNA_H-akashiwo_Contig99.24.1|Name=mRNA_H-akashiwo_Contig99.24.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=7579bp|location=Sequence derived from alignment at H-akashiwo_Contig99:1613443..1621021+ (Heterosigma akashiwo CCMP452)
CAGGTTTACTGGTACAACAGCGCCACCCAGCGGCACCAGTTCGACGTGCC
GCCCGAGGTGGAGGAAAAGATGAACGCAACGAACTCCCCGCAGAAGCTGG
GGCACCTGAGGCAGAAGGCCAGCATGCGCCTGAAACAAGTGGGCGACTGG
ATCCAGTACCGCGGCGCCCACGACAAAACCTTCTACTACCATGAGACGTC
GGGTGGGTGCAAACGTTGTATCTGGTACGGGCATGATGATTTGCTTGCTT
GCAGCGTGTGTCTATTATCATGCGTGCAGTTGCAGGGGGTCGGGGGTCTT
CCTAGCATTTTTTAAATTATTATTTTAACTATATACGTTCTCTCATGCCC
TCGTCACATCCTTAGGCGCATGTTCTATATCACCAGCTGACTGCTTGCAT
GGAGCGTGATTTCTGAGCTTGTGAGCTTGCCAAATGGAGAATGGTAGTGT
TGTATTTTTCTTCTGCATGGCTGAATTGAGGTCTTGTTAACGGAAGGCAC
ACATCCAGCCCTAGTTCAAGTACATCAGCACCATCACTGAAACAGGAGGT
TAGAAGAGATTATTAGAATAGGCTTTACAAATGTATAGCTACACTACTAC
AGTGTTTACAAGGCCATCAGTGCAAAAGACTCGAGTTTCGGCCAATGCTT
GGCCACCACCAGCTGAGAGGCTGATGGCTTGTCGTCAGTTTTTCTGGATT
GTGATCCGGTTATGAGCCTTCAAACAATGCTCCTGTAGTTGCCATGAGTC
AACGGTCATCATGACCCTCCAGAAATAAATAAAAATTGAAGAAAAAGAAA
GCAGGTCTGTTCATGCTGTGGTCCCACCACTCTGCATGATCACTGCTGCC
CTCTGTTCGTTACTGCGTGAATGAACTGCAATTTTTTTCGTTTGCTTTTT
TTCCCCACGAAATTTCTTCGCCCGCCATCACAGATTTGGTACGTAAGTAT
GCGAAAAAAACTTTAAACTTTCTCTTTCAAAAGCTGGAATTTGAAACCAT
TTCTTCTGTGCCCCCTGACTCCACTGGCTTTGACGGCGTATAATACCGTC
TTACTTGGGAATCCAAGGCTTAGGGCTTTCTGGAGTAATTTATGGATTGT
CAGGGGAAGGGTCACTTATGTCTGAGTTTTACTATTTCAGCAACGCTGGG
AGACTGTGATGGCCGCTGGCCAATGGCGCAACAACAGGAGCACTGTTTCA
AGGCCTGCAACCGCATCACAATCCAGCAAAACAAACGACAAGTCATCAGT
CTCTCAGCTAGTGGTGGCCAAGCATTGGCCGAAACTCGAGTCTTTTGCAC
TGATGGCCTGGTATACACTCTAGTGATGTAACTATATTTTTTATAATGAG
CCTCTTCTAATATAATCTCTAACCTCCTGTTTCAGTTATGGTGGTGATGT
ACGTAAACTAGGGCTGGATGTGTTGTGCCTTCCGTGAAAACCTTCATTCA
GTCATGTACAACACAGCACAATACTCCACGATGGTCTTAGCAGAGCCAAA
CATAAAATCAAATTGAGACTGGTAGTGTTGACCCTTGTATCATGGCGCCT
TCCCAGCACTTGCGGATATCTCCTTTTGATATCTTGTAAAAAAAAAAAAA
AAAAAAAATCTCTTTAAGGTCGACCCTAATCTACCACGGGTCACCGTCCA
TCGCTGACTGTCTTCTTCCGTTAACGCTCTATCAGATCGCCGTACCTTTC
CGCAAGTCAACCACCTTGCTGGAGCCTCCGGCTCAAAACTTTGCTTTCGC
AGCAGAGCTCGGCATACATTTCCGAGATGCAATAACTAGCCCATGATCCA
AACTGTTTCCAGACATTGACTAGACGCGAACAGCTTGACTCAAACTTGCA
GCTCAGGCTTCATGCAACGCTAGTTCCCCCCCCCCTAACGAAATGGTCAT
TTGCGCTCTAAGGCCTGCATCTTCATGATTATTCTTCAACCAAACTAATC
ACTATGTTTTACAATACACTCATATTCCAATACATGGTGAAACCAAAAGA
AAAGTGTTAAAAGGGTTGAAGATGTAGAAGGAAATTGCCCCCGTTCTGGG
TGGTGGTCGGCGGCTGCTGCTGATGATTCTGCTGCTGCTGCTGCCTCCAA
GTCATGACAGACGTGCAGCCAGTGTCCAGGTAGCACGCCGTAGGATCAAT
GGAGATCGAGGGCGATCAGGACCCGAGGAGCACTGCCGCAGCGGCGACGG
CGACAGCAATAGCACCGCCACCCAAGAGCGGGGGCAGCAGCGTCGAAAGG
AGCCACGAGGGTATGGCCAGCAGAGTGAACCAAAGAGAGAGGATGGCATG
CGCCAATTGCCCATAACCAATAGAAAGGCAAAACTCAGTAAAGATTGAGT
TGCCTTCTTGGTCTTGTGAACCACTGAGAACTAGATGCTTGAATGCATAG
GTAGTTGATCACTATGCATAAGTTTAATATGTCGTTAGAGATTAGGCTTA
CTAAAGAAGCCATGATGCAATGGTAATGAACATGTACAACAATGATAGTA
GCAGAAGAAGAAGAAGATGATGATGATGAAGAAGAAAGAAGAAAAAGATA
AGCTGGGAGAACAAATGAAGTATTCTTTCTACTTGCTCCTCCAAAATAAA
AAATTATAATCAAATAATATAACCAATCGCAACAATTCTACTTCATATAG
CCTCAAATGATGGTAAAAGAATGTAGTACTATACTGCTAATTGACATAAC
AAATCCAAAAACTCCAATTACACATCACTGACCTTGAAGAATCAGTATAA
GCCAAAATAAGATTGTTTTGACAGCTGTCCGTGTTGCTTGTGCCCCAAGA
TATTATCACTACTACCCAATTTCAAAATACAAAGGGCAGCAGCTATCAAA
CTTACCCAATAACCCAGAAAGTCGAGAATTAGTGCTCCAAACCAAAACAC
AGTGAGAGATGCACAGAATGTTCGAAAATACAGAAATGCGCGCGAAACAC
CATCATTGGCCTCTGAGAGCGCCGTCATTCGAATGCTCCCCCTATTATCA
ACGTGGAGTAGCGTTGCTAGGCATTATCATCACTGCCATAGACACCATAG
CCTTGCTTAAAGCCGTAAGCATCTGAAGTGCCTGCAGGCTCCTCATCACG
AAAGCGCTGATGGAGCTCCGCGGGGTCAAAGGTATAGGTTGGTTACTGAA
GGCACCATACATCACAGAAGCCTTAGGACCAACAGGTGCTGCCGCCGGTG
TCATTGGAAGTGTACCAGTTGCTAAGCCCATTACTGCTTCCTCTGCCATG
TTGAAGGGCCCGAACCAGGGCGTCCAAGGTGTTCTGCTGGGCTTGTCACG
ATATGGCCCAGCCATATTCGTTTTGCTTTTTACTTGACTGAGATGTACGA
GAGTTAGGGGAGGGGAAAAGGCGTGTTCGTATGAAAAAATAATAATAATG
ATATAATATATAATAGGACCCGAAAATATATTCCGAAATGATAGCAATTT
GAAATATTGAAATAACCCGAAATGGAATTCCGAAACGGTAGCAATTTGAA
ATAACCCGAAATGGAATTCTGAAATGATAGTGATTTGAAATGACCCGAAA
TGTAATTGAAATGTTTTGGAAATGTCTGCCGTTCTGCCCGGAGGATACAG
TGCCCCGCTGACTGATATCCCTCCGGGGGAAGCCATTTCGGCTTAAATGG
CAATGCGCAGTGTTGGTTCTATAGACCAAAGATGCCAGCAGTTGATCCGG
TCATAGTATAGACGGAGGAGGACCACGTTATCTAAGGACCATTGGGCACT
GTCTCAAATCCGCATGGTCTGGAGACCCACATTTCCAGCAAAAACTGTGC
ATGCCTCGGTAGGGAAGATCGCCAGGAGGTTGCTGGGAAGCTGCAGAAGC
CCCACGGGCAAGATCAAGGCTGACGCCGCGGGCGCCATGGGCACCACCAC
CACCAAAGTGGGGAGGAGCAGCAAATGCGTGAACATAAAAGTCACCAACG
TCAAAGTCAAAGTCCTCGGGCTGGGTCATTGCAGCATGAACCTTGAATGA
GGTCCTCAGTATTACCCTTCAGTTCTTCGTACAGCGCTTCTGGAGTGTGT
CAAGAACGATCTCAAGTTTCATTATTGGGGAAATGAAAGGCCGGTACAAA
GCGTCATGCTTGGTGCCGTCCAGCAGCTCGTTGATTATCTCGCAGATCCC
ATGGAATGGGTAATCGGCTGCCTCATGGTCGTTGATTGATGCCGTCAGAG
TAGGGATGACATCGTTGTCGTCGAGCAAATCAGGGCTGGACTTCTCAATG
TTCTCGGTCAAGTCAGTGAAGCGAGATCTGTAGACCATGAAATCACCTCC
AATAGGTGCCGTAGCCCGGCGAGCCTAGTCCGCACTGTTGAGTTGATCTG
ACCTGCTGATTGGCGAGCTTTTCTTTACACTTGAGCCAGATCTGACATTA
TGGTACTACTAGAAGTATATGTATCAAGCTGCTTCCATCCAGTGGTCTTG
TTCACTTCGAAGTAACTTTCAAACTCCTTTGACCACATAGCAAGATCAAC
TGCATCGATTATAGCAGCCCTGTCTCTGTCAAACTTGATCTGCGTGGCCT
GAGTTGGATGGTGCTCCATCCAATCATTCGAGTTGAGAGCGGTTCTCTGG
ATGGTCTCAGTTTTGTCCTCATCAGGCTGGCCCTCCTCATTAAAAATGTT
TGCTGCTTGACAACCTGACGAATCATCGTGTTGACTGGTGAAGTCGCCCA
CAATAGGTGGGACAGCTTCGCAGACTGGAAGTGGCTTTGGAGTAGTTTGA
TTACCAGCATCTTGTTAGGGTTCCTCCGGAGCTTCAGAAGCCTCTCAGCG
GGGGATACACCTTTGTCTTCTTGGCTTGACTCCATCTTCGTTGAGACCAG
AATAAATAGGTATAGCCGACACCGGTTTTCTTGTAATTGGTCCCACGTTG
ATTTTCACACATGGCACCAGCGTAAACTAGACTCAAAAGAACTGTAAAGA
TTCTGTACTAAAAGCAGCCTGCTTTTCGACAGTGGCACTCTTGTACTTGG
GGCCTGGTTAGATCCCGTCGAAGCAAAAACTTTGTCGAGCTTTGAGGACC
GAAGAATCAGTACTTTTTTTTTTTTTTTTTAATACGTTCTCATGCTGCCT
CGTCACATCCTGAGGAAGGTCCTCTACGCCAGCCGACCGTCATGTTGAGC
TATGAGGCCGGTTTGTGGAAGTTACTTCCGTAGCTTGTGCAAATTAGAAA
AACGGGCTAGGAAGCAGCACTCGTGCTGCGAAAACAGGGGTGGACTGCGC
CAGTCTTGGTGATACCATCCCGACCTGCGGGAAGGAGAAGATGCACTCGT
CGATGGATGTGAGTTGTCGGAAGAAGCGCCTACGGTAGAGACAACTGAAA
GAGGGCGGTGAGGCCAAAGGGCAATAGAGCATGTAGGGTTAAGGACAGCT
TGAAACTTCGGTTTAGTCAGTAGTCAGACTTAGCTCGACGAAGTGCTCAG
ATGTCAAGGCAGCTGCAAATAGATGGTGGTTGTGTGGTTCAGGATGTGAA
GGAAAGCATTGCAAGTAGAACGTATACAAAAAAAAATCTCTGATCTTGTC
GATGTGAACCTTGTAGTGTCAGCGCTCGTATCATCATGCCTTCCAATGCT
CGCGAACATCCCTTTGATGCAACTTGGGCCACCATCCTTTGCTTACGACC
TCCTTCTGTTATACCGCTCTGTCAGGTCATTGTACCATTCCGTAAGTTGC
CAACTCCTGGAGCTTCCGGCACTTCCTCCTCCCACGTCACTGCTCCAGAT
TGCCATCGTATCCAATCCTTACCCCCCTCCGACTATACAAAGATCCGATG
ACTGGCCCATGATCCAAATCGTATCCAGACATCATTGACTGCACGCGCAC
CATGGGGCTCGAACCCGGACCCGCAGCTTATTGCAACGGCAGTTTCCTCC
TCTAACGACTGGCAGGACAGTACTAATCGCGCAGGGCAAATGCAGTGGGA
GTCATAACCACTTAAATTCCAATATGGTAAAACCAAAGGAAACGTATTAT
TAATAAAAGGGCTGAAAATGTATAGAAAAAGGAAAGTGTCCCCATTCTGG
GGGGGTGGCAGCGGCGGCTGCTGATGATGATTCTGCTGTTGCTGATGCCT
CCAAGAAAATATTATTTCTATACTTGCTCCACAATACATAAAACACACCA
CCCTAGGGGAACTATTTCACGAGGTGGTCGGCAAGTTTAGATTTTACATT
GAAACTTTCCAGGGTAAACGACGGGTCACTGATGCGCCGATATATATTCG
GGAGATCAGCGATGAAATACCCCTCGTCATTTCTGAGGATCACCGTACTA
CAGCGTCTTATATTCGATCGTGCCTCGCCTTCTAAAACCACGCTAAATCT
GCGGTAGTAGTACTAATAAGTCCGAATTTCTAAAAACCTATTTTCTTGTT
CTTTTCTGATTCACAGAAGTAATCCAAAGAAAAGTCTCGGAACACAACTG
ATTGGTCAGCTTCTTTCTCTTCCCTACTGCTAAATTTGTTCGTACCACGA
CAATATTAAATCAATCTCTGTCTCCCATAACGAAAGTCTAGTGCAGGCTC
TTGCTCGTCAAACATTTCTGCTGGTATAGCTATGGTGAAGGAAGCCAGAA
CATAAACCAGCATAAAGAGTAGCAAGAGCACACGCTGAGGGACAAGGAAA
CTTTCCAAGCAACTTCTTCCTCGTCTTTTTTGTGGTGCTTCTCGGAGGGG
AAGTGCACAATTGTGCTTGAAACGACGAGTCGTACCCTCGTACCCTCTGT
TCAAAGTGGATTTTGGAGCTCTAGAAGCCGAGATATTGGTGCGCGAAACG
TATACCAAAAAAAAGCGACAGAAAGTGACCCCCTTTTCGGTGCCCGATCT
GAAAAAAAAAGGTAGGGTGCACATAATAAAATATAACCAATCGCAACAAT
TCTACTTCATCGCCTCAAGTGATGGTAGGTACAAGAATGTACTACTTTTA
CTGTCATTTTGACACAACAAATCCAAAAACTCCATTCGCAACTTACTGAC
TTTGGAGAATCAGGCTAAGCCAAAATAAGAGACAGCTGTCCTCCATGTTG
CTTGTGCCCCAAGACAATACTCTCACTACTACCCAATTGCAAAACACAAT
GCGCAGCAGCTTTATCAAACTTACCCATCAACCCAGAAAGTTGAGAGAGA
CGATTAGTACTCTTGATCAAAATCCGAAACATAGTGAGAGATGCACAGAA
TGTCTGAACATACAGAAATGAGCGCGAAACACATCATTGGCCTTCAAGAG
CGCCGTCATTCAAATGTAATATACGATAATAGAAGTACTACACCTGCAGT
TGACTTCTTTGAAGCCTTCTCTCTCTCTCTCTTTTAACGATTATTATACT
TCTTTATTAGCTTGCCCCTGTTTCTATCATCACTTCGAACTTCTCCCTGT
CTTTACACTGCAGCTTTTCTCTTTTCTTCCTCTGGCCAGGTGACTTTCAA
TGGGAGCGGCCAGCAGCCCTGGGCCCGGGTGACCCCGTGGAGGCCAAGGC
GGACGACCCCCCGGGGGAGGACAACACCAGCCACGCGACCGCGGGGGGTG
GCGCGGGGGGCGAGCAACACCCGCAGCCG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig99:1613443..1621021+

>mRNA_H-akashiwo_Contig99.24.1 ID=mRNA_H-akashiwo_Contig99.24.1|Name=mRNA_H-akashiwo_Contig99.24.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=342bp|location=Sequence derived from alignment at H-akashiwo_Contig99:1613443..1621021+ (Heterosigma akashiwo CCMP452)
CAGGTTTACTGGTACAACAGCGCCACCCAGCGGCACCAGTTCGACGTGCC
GCCCGAGGTGGAGGAAAAGATGAACGCAACGAACTCCCCGCAGAAGCTGG
GGCACCTGAGGCAGAAGGCCAGCATGCGCCTGAAACAAGTGGGCGACTGG
ATCCAGTACCGCGGCGCCCACGACAAAACCTTCTACTACCATGAGACGTC
GGGTGACTTTCAATGGGAGCGGCCAGCAGCCCTGGGCCCGGGTGACCCCG
TGGAGGCCAAGGCGGACGACCCCCCGGGGGAGGACAACACCAGCCACGCG
ACCGCGGGGGGTGGCGCGGGGGGCGAGCAACACCCGCAGCCG
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