mRNA_H-akashiwo_Contig984.6.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig984.6.1
Unique NamemRNA_H-akashiwo_Contig984.6.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A423U3V1_PENVA (Uncharacterized protein n=1 Tax=Penaeus vannamei TaxID=6689 RepID=A0A423U3V1_PENVA)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-6
Identity = 35/85 (41.18%), Postives = 46/85 (54.12%), Query Frame = 1 
Query:  148 VVKYLLEKGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRNKWNHIIGDVFDPKVKPAMQKKVKAALNGFRTGLTDP 402
            +   LLE GA VN QD   QTPL+ AAY   VETV+LL+D GAD + +NK      ++ DP +           L+ FR  +T P
Sbjct: 1644 IADLLLEAGAEVNVQDWAGQTPLHWAAYEGTVETVQLLLDFGADTTIKNKEGLRYDNLVDPSLS-IPHTPPTTTLSPFRVTMTPP 1727
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A1U8QJ37_EMENI (Uncharacterized protein n=2 Tax=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) TaxID=227321 RepID=A0A1U8QJ37_EMENI)

HSP 1 Score: 57.0 bits (136), Expect = 2.530e-6
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  100 EKDYALINACRNNHTKVVKYLLEKGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRN 294
            E D  LI A R     +V  LLE GA VN  ++N +T L  AA + R+ETVE+L+ HGA+K+ R+
Sbjct:  182 EGDTCLIMASRERTPAMVSLLLENGAEVNASNNNGRTALMEAALWGRLETVEILLSHGANKTLRD 246
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A084W1V6_ANOSI (Uncharacterized protein n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084W1V6_ANOSI)

HSP 1 Score: 57.0 bits (136), Expect = 2.920e-6
Identity = 26/65 (40.00%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:  115 LINACRNNHTKVVKYLLEKGA-GVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRNKWNH 306
            L  A R  + ++++YLL+ G   VN +D+   TPL HA   + +ET+++L+ HGAD  HRN++ H
Sbjct: 1588 LFGAAREGYNRILEYLLDSGLFDVNSKDTIGSTPLFHALAGAPLETLDILLHHGADVEHRNRFGH 1652
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A0A2VT67_BEABA (Protein phosphatase 1 regulatory subunit 12A n=1 Tax=Beauveria bassiana D1-5 TaxID=1245745 RepID=A0A0A2VT67_BEABA)

HSP 1 Score: 56.6 bits (135), Expect = 3.450e-6
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1 
Query:  112 ALINACRNNHTKVVKYLLEKGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKS 285
            AL  A    + ++++ L+ KGA VN  D N +TPL  AA++ R+E V++L+ HGADKS
Sbjct:  265 ALHMAAAEQYPEMIRLLVTKGADVNAADVNGRTPLMEAAFWGRLENVQILLHHGADKS 322
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A8H7R8F3_9FUNG (Uncharacterized protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7R8F3_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 6.920e-6
Identity = 38/94 (40.43%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   25 NLNKYALQGQEAEVREIVEKGVTQREKDY----ALINACRNNHTKVVKYLLEKGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRN 294
            NL   A  GQ   VRE++E G+     D     A+  A   N  ++VK L+EKGA VN +D  + TPL  A     VE  +LL+D+GAD  H N
Sbjct:    9 NLWVAAGDGQIDRVRELLESGIAVDGHDQFGYTAMHAAVSYNQIEMVKLLIEKGANVNIEDFEKDTPLYVA---ENVEMAQLLLDNGADPKHTN 99
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: UPI001D03616B (ankyrin repeats (3 copies) domain-containing protein n=1 Tax=Hirsutella rhossiliensis TaxID=111463 RepID=UPI001D03616B)

HSP 1 Score: 53.1 bits (126), Expect = 8.390e-6
Identity = 27/57 (47.37%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:  112 ALINACRNNHTKVVKYLLEKGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADK 282
            AL  A    + K V  LL KGA  N  D N +TPL  AA + R++ VE+L+ HGADK
Sbjct:   30 ALHMAACEQYPKTVDLLLSKGANANAADINGRTPLMEAALWGRLQNVEILLRHGADK 86
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: S2J3B5_MUCC1 (Uncharacterized protein n=4 Tax=Mucor TaxID=4830 RepID=S2J3B5_MUCC1)

HSP 1 Score: 54.3 bits (129), Expect = 9.800e-6
Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 1 
Query:   25 NLNKYALQGQEAEVREIVEKGVTQREKDY----ALINACRNNHTKVVKYLLEKGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRN 294
            NL   A  GQ   VRE++E GV     D     A+  A   N  ++VK L+EKGA VN +D  + TPL  A     VE  +LL+D+GAD  H N
Sbjct:    9 NLWVAAGDGQIDRVRELLESGVAVDGHDQFGYTAMHAAVSYNQIEMVKLLIEKGANVNIEDFEKDTPLYVA---ENVEMAQLLLDNGADPKHIN 99
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A182JIR6_9DIPT (Uncharacterized protein n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182JIR6_9DIPT)

HSP 1 Score: 55.1 bits (131), Expect = 1.320e-5
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:  115 LINACRNNHTKVVKYLLEKGA-GVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRNKWNH 306
            L  A R  + ++++YLLE     VN +D+   TPL HA   + +ET+++L+ HGAD  HRN++ H
Sbjct: 1386 LFGAAREGYNRILEYLLESDLFDVNSKDTIGSTPLFHALAGAPLETLDILLRHGADVEHRNRFGH 1450
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A8D8PJC3_CULPI (Ankyrin-2 n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8PJC3_CULPI)

HSP 1 Score: 54.3 bits (129), Expect = 2.290e-5
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 1 
Query:  103 KDYALINACRNNHTKVVKYLLEKGA-GVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRNK 297
            + Y L +A R+    +++YLL+     VN  DS   TPL HA   + ++TVELL+ HGAD  H NK
Sbjct:  605 QQYLLHSAARSGFVSILRYLLQGHTLNVNGPDSTGSTPLFHAVTSADIQTVELLLQHGADVEHTNK 670
[Close]
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Match: A0A074YJ74_AURSE (Uncharacterized protein (Fragment) n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074YJ74_AURSE)

HSP 1 Score: 50.8 bits (120), Expect = 2.590e-5
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:   28 LNKYALQGQEAEVREIVEKGVTQR----EKDYALINACRNNHTKVVKYLLEKGAGVNCQDSNE---QTPLNHAAYYSRVETVELLMDHGA 276
            LN+ A  G E EVR ++E+G +      ++   L  A +  HT++V+ L+E GA +N    N    +TPL  AA   R+    LL+D GA
Sbjct:    5 LNQAAADGDEEEVRRLLEQGASVEGILDDRQTPLQFAAQEGHTRIVQLLIEYGADINALGYNGSALETPLQAAAVSDRIAIARLLLDRGA 94
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig984.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A423U3V1_PENVA1.170e-641.18Uncharacterized protein n=1 Tax=Penaeus vannamei T... [more]
A0A1U8QJ37_EMENI2.530e-646.15Uncharacterized protein n=2 Tax=Emericella nidulan... [more]
A0A084W1V6_ANOSI2.920e-640.00Uncharacterized protein n=1 Tax=Anopheles sinensis... [more]
A0A0A2VT67_BEABA3.450e-644.83Protein phosphatase 1 regulatory subunit 12A n=1 T... [more]
A0A8H7R8F3_9FUNG6.920e-640.43Uncharacterized protein n=1 Tax=Mucor plumbeus Tax... [more]
UPI001D03616B8.390e-647.37ankyrin repeats (3 copies) domain-containing prote... [more]
S2J3B5_MUCC19.800e-641.49Uncharacterized protein n=4 Tax=Mucor TaxID=4830 R... [more]
A0A182JIR6_9DIPT1.320e-540.00Uncharacterized protein n=1 Tax=Anopheles atroparv... [more]
A0A8D8PJC3_CULPI2.290e-542.42Ankyrin-2 n=2 Tax=Culex pipiens TaxID=7175 RepID=A... [more]
A0A074YJ74_AURSE2.590e-535.56Uncharacterized protein (Fragment) n=1 Tax=Aureoba... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig984contigH-akashiwo_Contig984:290468..297359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005097684.1
PFAMsAnk_2,Ank_4,Ion_trans
Model size531
Max annot lvl33208|Metazoa
KEGG koko:K04984
KEGG TC1.A.4.6.1,1.A.4.6.2,1.A.4.6.3,1.A.4.6.5
KEGG Pathwayko04750,map04750
Hectar predicted targeting categoryother localisation
Exons5
Evalue4.04e-09
EggNOG OGsCOG0666@1|root,KOG0510@2759|Eukaryota,38G7Q@33154|Opisthokonta,3BCDU@33208|Metazoa,3D0P6@33213|Bilateria
Descriptionosmolarity-sensing cation channel activity
Cds size450
COG categoryDZ
BRITEko00000,ko00001,ko04040
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig984.6.1prot_H-akashiwo_Contig984.6.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig984 290486..297296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.740897-UTR-H-akashiwo_Contig984:290467..2904851681388067.740897-UTR-H-akashiwo_Contig984:290467..290485Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig984 290468..290485 +
1681388067.806186-UTR-H-akashiwo_Contig984:297296..2973591681388067.806186-UTR-H-akashiwo_Contig984:297296..297359Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig984 297297..297359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.7542417-CDS-H-akashiwo_Contig984:290485..2906581681388067.7542417-CDS-H-akashiwo_Contig984:290485..290658Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 290486..290658 +
1681388067.763959-CDS-H-akashiwo_Contig984:290807..2908971681388067.763959-CDS-H-akashiwo_Contig984:290807..290897Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 290808..290897 +
1681388067.7741852-CDS-H-akashiwo_Contig984:291086..2911931681388067.7741852-CDS-H-akashiwo_Contig984:291086..291193Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 291087..291193 +
1681388067.7852004-CDS-H-akashiwo_Contig984:292480..2925181681388067.7852004-CDS-H-akashiwo_Contig984:292480..292518Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 292481..292518 +
1681388067.7957556-CDS-H-akashiwo_Contig984:297254..2972961681388067.7957556-CDS-H-akashiwo_Contig984:297254..297296Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig984 297255..297296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig984.6.1

>prot_H-akashiwo_Contig984.6.1 ID=prot_H-akashiwo_Contig984.6.1|Name=mRNA_H-akashiwo_Contig984.6.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=150bp
MVNLNKYALQGQEAEVREIVEKGVTQREKDYALINACRNNHTKVVKYLLE
KGAGVNCQDSNEQTPLNHAAYYSRVETVELLMDHGADKSHRNKWNHIIGD
VFDPKVKPAMQKKVKAALNGFRTGLTDPMPITQNKKEKKDECCAVCSIM*
back to top

mRNA from alignment at H-akashiwo_Contig984:290468..297359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig984.6.1 ID=mRNA_H-akashiwo_Contig984.6.1|Name=mRNA_H-akashiwo_Contig984.6.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=6892bp|location=Sequence derived from alignment at H-akashiwo_Contig984:290468..297359+ (Heterosigma akashiwo CCMP452)
GGAAGAGTCAAGCAAGAAATGGTGAACCTTAACAAGTATGCCCTCCAAGG
CCAGGAGGCCGAGGTTCGGGAAATCGTCGAGAAGGGCGTGACTCAAAGGG
AGAAAGACTACGCTTTGATTAATGCTTGCCGGAACAACCACACCAAAGTG
GTTAAGTACTTACTTGAAAAGGGGGCGGGTGTAAATTGCCAGTGAGTTTG
AAATCGTGTTAGTCTGCCTGTTACTTGTCTCTTGTCTCCGATTCCTTTTT
GCTCAACCAGGTAATAGCTTTGTTAGGGGCCTCCTCTCTGTTTCGCTTAC
CCACCTTTCCAAAATGCACACTTGACTGTTGTATGTACAGGGATTCAAAT
GAACAAACTCCTCTGAACCATGCGGCTTACTATTCTCGGGTTGAAACTGT
TGAGCTGCTGATGGACCATGGAGCTGACAAGTAAGGACAAACTGGGTTGA
AATCGATTAAAGCTCCATTGATGATGATCGTGATGATGAGTATAATTGAT
TTATATTAAATATAAAGTCCATCGATGGTAGCTTCACAATTGATTGTTTG
TGAATCTCTTCTTTTCTTTTAGTTCATGGCATCTGCCGTCCACTACATCT
TTCTCTTCTAAATTCAAAGATCCCACCGGAACAAATGGAACCACATCATC
GGTGATGTCTTTGACCCAAAGGTAAAGCCAGCAATGCAGAAAAAGGTTAA
GGCTGCCCTCAACGGATTCCGGACAGGTAATGGTGTTCTAATATGCTCTG
CTGAAGCAATCAACCAACAACTTGAAAAATCTATCCGAACTTCCCTCTTT
GTGCGTACAGAAACAGAAATCAGTACGTCTGAATATCTGGGTCGTACAGT
ATATGTGATGATGCTGGTTTTTTGTGTTGACGGCATTTTCTGAAATCCGT
ACAGTATGTGATGATGTTGTTTTTTTGTGTTGAGGGCATTTCCTGAAATC
CCTGTATAGTGCAGAAAATGATCACTCCATGTCACACCTCAACAATGTAC
TACATAGTATTTTTGTTTTTGAGCATTTTCTTCATCATTTGTGTATAGTA
AGACAATAGGTGTAATTTTTCACTATGTTAGAGTCAGGCATGCATACATC
ATACATTCTGAGTAGGCACTATGTACCATTGTGTACTACTGAAGCCATTT
TTTCAACCTCTCTATACTGACTGCTATTAGAGCAGGAGCACAGGGGTCAT
ACATTAATGACATCATCAAAGGGGGGTCTGCGACATGATGACTTCGGAGG
AAAAGAAGGAGGGGTGTAAAGGGGGATTCAAGGGGAAGAGGGGAGGTTAT
GATGACTTGGGGGGGGGAGGGGGGTCAGAATCAGGATTTTTTGATGATGT
CATTAATGTATGACCCCCAGGAAGAGCTCACTTACCATGCATTGATTGCA
AGGGTAATAGCACAATTTGATTCGCTGATTTCAGATGTTATGATGGGTTA
TGGCTATCACCTGATGAAAAACACATAATGATGATTTCGAACAATCTATA
GGAGTGAGTGCGCAGCATGATCGACGAAAAAAAAAAAAAAATTACACACA
GAGTATACTCCATGCACGCAGCCCTCTCGTACTTAATTGATCTTCTTTTT
GGGTTGTGACCACAAAACTTTCAAAAGTTCCAAACTTCAACTTATAGATC
GTAATGCTACTAGGAACAACCACTACGTAATTCAACAACAACATATAGAA
GAATTTATGCCGGTTAGGAGGCAACTTCAACATCAGATAAAGATGGGTGG
TAGCAGCATTGGTGGATAAGTTTCACTTCATGTTAATTAAAAAAAAAGAC
GTGCTATAATGATGACGAGTCATCACATTCAAAGAATAAAATGGCCTGTC
ATAAAAACTATACGTTATGCATGCATGCTGATGTATAGTGTTCCCTAGAA
TGTCGAATAACGACTGACAAGATCAGCACTAGGATGTGCGTGTGGTCTCC
CTAAACTCCTGCTCTTAGTGTAATCTCCTCTTCCTGTCATTCCCTTCCTT
ATTTTTTGCTCAGGGCTAACTGACCCAATGCCTATCACACAGAACAAGAA
GGTAACTATTGCGCAACTGTGCATGACTCTCATTTGTCCACCTCTGCGAG
GTTGAATATTGCCCGTAACACTTTTAAACAATCCCACATGAAAACCGGCA
TACATGTACCAGATTTAAAAGAAGTGTTGAGTGGCGGTGGTTCTTGGGTG
ATGAGTTTCACAGGAAAAGGATGCCATTTATTGTGTGGAAAAACATCTTC
AGTAGTATGTATTGTGTGGGGACTGCACAGCATACAGGGGATGTAGGAGG
TGGGTGAGGTGGAGTTGTTCAGATGGGAGAAGGTAGTATCTACTCCGTTC
TTAAACTTTGGCCACTGTGGAAGGGAGAAGATCATAAAGTCTCTATGTGT
GCATCAGATCATATGCGCAAGCCAAGAGGGGAGGCAGGCCCTTGTGAACT
GAACCTTGAAGCTTGAAAGGTGAACTCCAGTTGAAATTTCCCAGCTATGC
TAGCTCTGAATGGACTGAAAGGGGGGGAGAAGACTATCGGTTACTGGAGG
AACAGCGGGGCTGCAGAGGGATGTCAGCGACAGGTGATGGCGGAGAAATG
TGAGGAGTCACCAGGGCCAGAGGCTGCGCTCGGGACAGCGGACAACCTGT
GCACCGGCTGAAGCTTTGGACAAAGGCTTGCCGGTCCCAGGGAGTGCTAT
CATTCACCGCCTGGGGCTCCGGTAAGTTAAGACAGAGGGTTCACTCCATC
AATTTAGTTCGATGAAGAAATTGAGGGGAAGGCGGGCCATCTGTAGGAGG
AGCATGGGATGAAGAAGGTACTCTTCTTGTTCCCAAAAGGTATAGTTGTA
CTGCTCACAGCAGGAAGTAGTAGGTCCTAGACTGAACGGAGGGGGGCTGG
TTTTTTCTTGTCAATAAGCCTTCATCAGTTTGCCTTAAGGTTTAGGTCTG
AAGGCATGtcTCTCTCCATGTACACAATGACATGTGCTAAGGCTGTGTCG
GATGGGGTCAACTCGGGATGATTCTGTGAAGAATGATTTCGCGTCGGAAC
TTTGGGGGCTCAAAAGGCAGATCATTTGCTATGTTTTACATCATGGTTGT
TCTAAGAGCCATCGGTAATCATTTTTCTCATTACTCGGTGATCATTTTCA
TTTCAACCCTGTTGTTGTTGTTGTTGTTGTTATCGGCAAATGATTTGATT
TGTGAGAATGTTGAAATATTTATTTGCAGAAGGCCGTTGGGCCGAAAGTT
TGGGGCAGCAAGTGGTGTTCTGTGATTTTGATTTGCAAAAGTCTGACCGA
GAATGAATCTTATTAGTTCGAATTTGCTGGCAGTTGGTTTCACAGCATCA
AAGAAGAAGCAGCGCAAGTATAGTCATCTGTCATCTACACTCAGCAGCAG
CCTCATTGGTTCTTTGTTTTTACATAACACAAGCCATACCGTGGGCTCCA
TTTCCATCATCACACCCAAAAAGGCTCGCTGATAATCCTAGTCTTGGGGC
GGGATGTTGCAGAAGAGGCTTTCTCTAGCTCACCATCCAAAAAATATCTG
TGTAACTGCTATAATGAGGATGATTATATAGGGTGCCAAAGTTGTACAGT
CTGAACCATGTCTATCTTGTTCAGACTGCAAATAGGCGTCAGTAAGAATA
ACATACAGAAGAAGTATAAATGGAGGAAGTATTAAAAGAGGAAGAGGTAG
TATACTTACAGTTGGCCATATGCATCACAGCTTGGTCAATGTGTAAGGAG
AAAACTGGCATTAATGGCACATGCATGTTGGATTGTGCTCATTCAGGAGG
AAATAGACGATTGAGGAAGCATTACGGAAGCCACATAGGCTCGATTTAGT
AACCAAAGCAAAGCTTCGACGAGGACATTTTACTAACCACGAAACTTCTG
ATTTAATTTTACCAAAGTGCTGCTTGAATGACCAAAGTCGCCCCAAAGCG
GATTCTGACTGGCCATATAGAAGAAATTTGTGGGTGTGGTGAATTTCACG
AATTTAAGAAGGAATGGTGGTATACTACATTTGTTTTCTTGTGTTTCCTC
TTCTTTCATTCAACACAGACAATCAATTAACAGAAAAGGATGAAATCATT
CATATCGTTGCATCTCCTCACTTTTTGTTCTTTTTGAAGAATTTGTCAAT
CCTAAATTCAAGTGACGATTTCCTTGCCCTGGTGTATAGTTGTGAAAACA
TGGCCAAACAGAATATTGTTAGTCTCACTCTGTGTTTGTCGCAATATATA
TAATATAGTAGTATCGCAAGCTGGGGCAAGGAGGAATAGTAGGTAGGGAA
GCATATTTGTTGGGGGTACAACAGAGGGCCAATGATACATTGACAGTTTG
GGTGGTATGACAGTTTTTGTGCTTGTGGTCTTATGATGATTTGAGTGGTG
GTATTGAGAAATGGCAGATTGAGGTGGAAGGGTCTACTTGTATAAGCTAG
GAGTTCTGCCCCGAAAGCGGTTTGAAAGGTTAGGCTCAAAACTAAAAATA
ACATCATATCATTGCAGGGTGTTGGTCATTGTTAGAATCACTGCTTACTA
TAGCAGACTCGATTGATTATGTGCCGGGGGGGTTAAGTTTTCCATTATTA
GAAAAGTTAGCACAAAGTCATCGTTGCTGCTGCCGGGAATGCCGGCAGCA
CTACATCAAGATATCCTGGCTGCTGCTGCTGCTGCTGCTCTGATGGGTAG
AAGATAATTCACCACTTCTTATTCTTCCCCAACCCATTGGCTATCTATCT
TCTGATTGGCTAACACAACCAGAAACATCATCATTGGTCACTCGCACATG
ACTGGCAAACATACCAGTATGTCGTACCATCCATATCTGTACGTATGCCA
CCAACAATGGTTCCTACTCTTCTTCTTCCACTCCAATCAACCTCCGGAGA
GAGTTCAGCGCTGCGGCCTGTGGCAGCGCCTACTCCGTCGGTCATCATCT
CATGTGCTTGCGTAACACTCCCCTTGGCCAGCTGGAACTTGAAAGCTGGC
AGATGAAAGTGAAAGCTGGCCACCAATGGAGATCAATGAGATGATGTACA
AAGCTCACAAGGGTAGGTCTTGATTGATATACCCTCTGGTTCTCCATGTG
CTCCCCTAGATACTGATCTTGGTAAGGTGCTCACTGTAGCACCATCTCCA
GTAGTAGTGCACTTGCTGTGTGCCCCAGGCTCGTCCTAGCCAGGGCTGAG
ATCCTTCATCCTTCTTTGTTGGCCACCCTTCACAAGCGGCATGATGCTAA
TGGGCTGAGCTTATCCCAGTTGCAGCAGGCCATCTCCTGCTGCGCTCAGT
CTTGACGGAAGAAAACTTCAAACTTGCGTAGGAACTGAACCGTGTGCACG
AGACCAGTCTATCATTTGACCCGACTGGAATTTGATTGTGCTGCACCAGG
ATTTCGTTTGCAAGTTATACTATGCAGTGACGAGATACACCAGGATTTCA
TGTGCAAGTTGTACTATGCACGTGCAATTTATACTATGCACAACACCTAT
GTAGTGTCTCACGAAGGCACACTCCACAGTCCCTGAAACGCTCCACAAAG
TATTTGTCATCACATTGGCAATGCTCGCCAGACTAAATCATCCGGGAATC
AAATCGCCGTTTCGAATCTCACCGTCATCTCAATATTTCACACTCCGAAC
TCACTCCAAACCGCAATTCCCCCCCCCTAGTTCCATAAGACGGCCTCGAC
TGAAAAGACGAATAGCCGAATGATTCCCGGCAGCAGTGTTAGAATCACTG
CTTACTATAGCTGACTTGATTGACAATCTGCCGGGGGGGTTAAGTTTTCC
ATTATTAGAAAAGTTAGCACAAAGTCATCGTTGCTGCTGCCGGGAATGCC
GGCAGCACTACATCAAGATATCCTGGCTGCTGCTGCTGCTGCTGCTCTGA
TGGGTAGAAGATAATTCACCACTACTTATTCTTCCCCAACCCATTGGCTA
TCTATCTTCTGATTGGCTAACACAACCAGAAACATCATCATTGGTCACTC
GCACATGACTGGCAAACACTGCCTCCTAGTATGTCGTACCATCCATATCT
GTACGTATACCACCAACAATGGTTCCTACTCTTCTTCTTCCACTCCAAAC
GACCTCCGGAGAGAGTTCCGCGCTGCGGCCTGTGGCAGCGCCTACTCCGT
CGGTCATCATCTCATGTGCTCGCGCAACAATCATCATTGTGCTCGCGCAA
CAATCATCATTATGTTATAGTTGTAATAGTAAGTTTTTTAACGGTGATAT
TTTGGAAAATACAAGGACGTAATCATGGATCACTTGAACAAATCCGCGAT
TTAAATACCAAATGAGCCAATGACGTCAGCCCCACTTTCGTTGTCAAATA
ACAATACTCGCTGTTCATTGGTGAGTTGGATTTTTATAACTCGGCCCACG
TTGATTGCGCATATCATGCAATCCACAAGCATTCTTCAGAACTGTTGTTT
GAATTTGAAAAGGAGATAGTACTGCTGTGTAGGCAAGGAAACCTGCTACA
TACAAGTAGGTGCCTGTCCTTTGACGACTGACCTTCCTTCAAAGATCCGT
TCCCCTTTTTTGCCCCAGGAATTTTAAACGCTGTTTTTTGTATTTATATC
CCATGCTGTTTTTCTCCTCCCCTGACCTGGATGGAACATACAGATTGTGT
GTATCTATGTCATGTGCATGCAGCATTGTTTTAACTTTGTACATCAACCT
GCTACCAGTTTTTTTCTGGCATATAACAAAAATGATGATTTATTATGTGA
TGGTGCACCATACCCTTCTGCTTCCTGTATTCTGCAGGAGAAGAAGGACG
AGTGCTGCGCAGTATGCTCCATCATGTGAGCCACATCCCATCGTTGACGG
AAAAAAAAATAATGAAATGATGATATCAGACAATTTTGTTCA
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig984:290468..297359+

>mRNA_H-akashiwo_Contig984.6.1 ID=mRNA_H-akashiwo_Contig984.6.1|Name=mRNA_H-akashiwo_Contig984.6.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=450bp|location=Sequence derived from alignment at H-akashiwo_Contig984:290468..297359+ (Heterosigma akashiwo CCMP452)
ATGGTGAACCTTAACAAGTATGCCCTCCAAGGCCAGGAGGCCGAGGTTCG
GGAAATCGTCGAGAAGGGCGTGACTCAAAGGGAGAAAGACTACGCTTTGA
TTAATGCTTGCCGGAACAACCACACCAAAGTGGTTAAGTACTTACTTGAA
AAGGGGGCGGGTGTAAATTGCCAGGATTCAAATGAACAAACTCCTCTGAA
CCATGCGGCTTACTATTCTCGGGTTGAAACTGTTGAGCTGCTGATGGACC
ATGGAGCTGACAAATCCCACCGGAACAAATGGAACCACATCATCGGTGAT
GTCTTTGACCCAAAGGTAAAGCCAGCAATGCAGAAAAAGGTTAAGGCTGC
CCTCAACGGATTCCGGACAGGGCTAACTGACCCAATGCCTATCACACAGA
ACAAGAAGGAGAAGAAGGACGAGTGCTGCGCAGTATGCTCCATCATGTGA
back to top