mRNA_H-akashiwo_Contig981.3.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig981.3.1
Unique NamemRNA_H-akashiwo_Contig981.3.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A7S2UVW5_9STRA (Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UVW5_9STRA)

HSP 1 Score: 286 bits (731), Expect = 8.380e-96
Identity = 151/165 (91.52%), Postives = 154/165 (93.33%), Query Frame = 2 
Query:   38 MRRTPGRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTFT 532
            MRRTP R  +KTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDID        FEEFLDMMTAKMSDKDT+EDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISP+EFYAIMTKKTFT
Sbjct:    1 MRRTPQRN-KKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDXXXXXXXXFEEFLDMMTAKMSDKDTKEDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPDEFYAIMTKKTFT 164
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A836CPT7_9STRA (Calcium-dependent protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPT7_9STRA)

HSP 1 Score: 275 bits (704), Expect = 1.420e-91
Identity = 142/171 (83.04%), Postives = 155/171 (90.64%), Query Frame = 2 
Query:   20 FNTV*KMRRTP-GRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTF 529
             +T    RR P G++  KTYERPGLSEEEIEEIREAFNLFDTDGSG+IDPKELKAAMQSLGFEAKNQTIYQMI+DIDKD +G+IDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDD TG IS++NLKRVAKELGE M++AELLEMIERAD DGD  I+P+EFYAIMTKKTF
Sbjct:    1 MSTYAAQRRAPQGKRAAKTYERPGLSEEEIEEIREAFNLFDTDGSGSIDPKELKAAMQSLGFEAKNQTIYQMIADIDKDSSGAIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDHTGKISLKNLKRVAKELGENMTDAELLEMIERADADGDSEINPDEFYAIMTKKTF 171
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A7S3K4A4_9STRA (Hypothetical protein n=2 Tax=Pelagomonadales TaxID=54409 RepID=A0A7S3K4A4_9STRA)

HSP 1 Score: 274 bits (700), Expect = 5.020e-91
Identity = 142/166 (85.54%), Postives = 153/166 (92.17%), Query Frame = 2 
Query:   38 MRRTP--GRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTF 529
            MRR+   G++P KTYERPGLSE+EIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDK      DFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQ+G I++RNLKRVAKELGETMS+AEL+EMIERADTD DG I+P+EFYAIMTKKTF
Sbjct:    2 MRRSSPGGKRPYKTYERPGLSEDEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKXXXXXXDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQSGFITLRNLKRVAKELGETMSDAELMEMIERADTDNDGQINPDEFYAIMTKKTF 167
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A662XQ59_9STRA (Uncharacterized protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A662XQ59_9STRA)

HSP 1 Score: 272 bits (696), Expect = 2.110e-90
Identity = 143/167 (85.63%), Postives = 153/167 (91.62%), Query Frame = 2 
Query:   41 RRTPGRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKM---SDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTFT 532
            RR   ++  KTYERPGLSEEE+EEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DIDKDG+GSIDFEEFLDMMTAKM   SDKD+REDIQKVFNLFDDDQ+G IS+RNLKRVAKELGETM++AELLEMIERAD D DG I+ EEFYAIMTKKTFT
Sbjct:    3 RRISQKRNAKTYERPGLSEEEVEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDKDGSGSIDFEEFLDMMTAKMVGASDKDSREDIQKVFNLFDDDQSGKISLRNLKRVAKELGETMTDAELLEMIERADADQDGEINAEEFYAIMTKKTFT 169
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: F0WRL3_9STRA (Calciumdependent protein 4 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WRL3_9STRA)

HSP 1 Score: 267 bits (683), Expect = 2.000e-88
Identity = 134/161 (83.23%), Postives = 150/161 (93.17%), Query Frame = 2 
Query:   50 PGRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTFT 532
            P +  +K YERPG++++E+EEIREAFNLFDTDGSGTIDPKELK AMQSLGFEAKNQ IYQMI+DIDKDG+GSIDF+EFLDMMTAKMSDK+TREDIQKVF LFDDDQTG IS+RNLKRVA+ELGETMS+AELLEMIERADTD DG I P+EFYAIMT+KTFT
Sbjct:    9 PQQSEKKIYERPGITQDEVEEIREAFNLFDTDGSGTIDPKELKTAMQSLGFEAKNQIIYQMIADIDKDGSGSIDFDEFLDMMTAKMSDKNTREDIQKVFALFDDDQTGKISLRNLKRVARELGETMSDAELLEMIERADTDQDGEIKPDEFYAIMTRKTFT 169
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A485KUJ5_9STRA (Aste57867_11335 protein n=36 Tax=Stramenopiles TaxID=33634 RepID=A0A485KUJ5_9STRA)

HSP 1 Score: 264 bits (675), Expect = 3.190e-87
Identity = 140/162 (86.42%), Postives = 145/162 (89.51%), Query Frame = 2 
Query:   50 PGRK-PQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTFT 532
            PG K   KTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMI DID        FEEFLDMMTAKMSDKD+R+DIQKVFNLFDDDQTG IS+RNLKRVAKELGETMS+AELLEMIERAD D DG I+PEEFYAIMTKKTFT
Sbjct:    7 PGNKRASKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMIGDIDXXXXXXXXFEEFLDMMTAKMSDKDSRDDIQKVFNLFDDDQTGKISLRNLKRVAKELGETMSDAELLEMIERADGDQDGEINPEEFYAIMTKKTFT 168
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A5A8CTE5_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CTE5_CAFRO)

HSP 1 Score: 264 bits (674), Expect = 4.230e-87
Identity = 137/164 (83.54%), Postives = 150/164 (91.46%), Query Frame = 2 
Query:   41 RRTPGRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTFT 532
            RR+P R   + Y+RPGLSEEEIEEIREAFNLFDTDGSGTIDPKELK+AMQSLGFEAKN TIYQMI DIDKDG+G+IDF+EFLDMMTAKMSDKDTREDI KVFNLFDDD +G IS+RNLKRVAKELGETM++AEL+EMIERADTD DG I  EEFYAIMTKKTF+
Sbjct:    5 RRSPRR--GRAYDRPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKSAMQSLGFEAKNATIYQMIGDIDKDGSGAIDFDEFLDMMTAKMSDKDTREDIVKVFNLFDDDGSGRISLRNLKRVAKELGETMTDAELMEMIERADTDQDGEIDAEEFYAIMTKKTFS 166
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A812RM93_9DINO (Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812RM93_9DINO)

HSP 1 Score: 253 bits (645), Expect = 4.950e-82
Identity = 134/163 (82.21%), Postives = 145/163 (88.96%), Query Frame = 2 
Query:   41 RRTPGRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTF 529
            RR+P R   + Y+RPGLSEEEIEEIREAFNLFDTDGSGTIDPKELK AM+SLGF+AKN TIYQMI DIDKDG+GSI+F+EFLDMMT KMSDKDT EDI KVFNLFDDD TG IS+RNLKRVAKELGETM+EAELLEMIERAD D DG ISP+EF  IMTKKTF
Sbjct:   50 RRSPRR--GRAYDRPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKQAMKSLGFDAKNATIYQMILDIDKDGSGSIEFDEFLDMMTHKMSDKDTDEDIMKVFNLFDDDGTGKISLRNLKRVAKELGETMTEAELLEMIERADGDQDGEISPQEFRDIMTKKTF 210
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A1R2C2Y3_9CILI (Uncharacterized protein n=8 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C2Y3_9CILI)

HSP 1 Score: 250 bits (639), Expect = 1.250e-81
Identity = 122/154 (79.22%), Postives = 145/154 (94.16%), Query Frame = 2 
Query:   68 KTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTF 529
            K YERPGL+E+EIEEI+EAF+LFD+DGSGTIDP ELK+AMQSLGFEAKNQTIYQMISD+DKDG+G+IDF+EFLDMMTA+MSDKDT+EDI KVF LFDDD+TG+I+I+NL+RVAKELGETM++ EL+EMIERAD+DGDG +S E+FY IMTKK F
Sbjct:   22 KQYERPGLTEDEIEEIKEAFDLFDSDGSGTIDPAELKSAMQSLGFEAKNQTIYQMISDLDKDGSGAIDFDEFLDMMTARMSDKDTKEDINKVFRLFDDDKTGYITIKNLRRVAKELGETMTDEELMEMIERADSDGDGQVSTEDFYNIMTKKAF 175
[Close]
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Match: A0A078B9B5_STYLE (Calciumdependent protein 4 n=7 Tax=Spirotrichea TaxID=33829 RepID=A0A078B9B5_STYLE)

HSP 1 Score: 240 bits (613), Expect = 7.970e-78
Identity = 118/154 (76.62%), Postives = 143/154 (92.86%), Query Frame = 2 
Query:   68 KTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAMQSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQKVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVISPEEFYAIMTKKTF 529
            K YERPGL+E+EIEEI+EAF+LFDTDGSG+IDPKELKAAMQSLGFEAKNQTI+QMISD+DK+ +G+IDFEEFLDMMTA+MSDKDTREDI KVF LFDDD TG I++RNL+RVA+ELGETM++ EL EMI+RAD++GDG ++ ++F+ IMTKKTF
Sbjct:   12 KKYERPGLTEDEIEEIKEAFDLFDTDGSGSIDPKELKAAMQSLGFEAKNQTIFQMISDLDKNKSGTIDFEEFLDMMTARMSDKDTREDISKVFRLFDDDNTGTITLRNLRRVARELGETMTDEELQEMIDRADSNGDGAVTLDDFFNIMTKKTF 165
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig981.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2UVW5_9STRA8.380e-9691.52Hypothetical protein n=3 Tax=Ochrophyta TaxID=2696... [more]
A0A836CPT7_9STRA1.420e-9183.04Calcium-dependent protein 4 n=1 Tax=Tribonema minu... [more]
A0A7S3K4A4_9STRA5.020e-9185.54Hypothetical protein n=2 Tax=Pelagomonadales TaxID... [more]
A0A662XQ59_9STRA2.110e-9085.63Uncharacterized protein n=3 Tax=Peronosporaceae Ta... [more]
F0WRL3_9STRA2.000e-8883.23Calciumdependent protein 4 putative n=2 Tax=Albugo... [more]
A0A485KUJ5_9STRA3.190e-8786.42Aste57867_11335 protein n=36 Tax=Stramenopiles Tax... [more]
A0A5A8CTE5_CAFRO4.230e-8783.54Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
A0A812RM93_9DINO4.950e-8282.21Calmodulin n=1 Tax=Symbiodinium sp. KB8 TaxID=2309... [more]
A0A1R2C2Y3_9CILI1.250e-8179.22Uncharacterized protein n=8 Tax=Stentor coeruleus ... [more]
A0A078B9B5_STYLE7.970e-7876.62Calciumdependent protein 4 n=7 Tax=Spirotrichea Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig981contigH-akashiwo_Contig981:250982..253115 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009036937.1
Preferred nameCEN2
PFAMsEF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8
Model size704
Max annot lvl2759|Eukaryota
KEGG koko:K16465,ko:K16466
KEGG TC1.I.1
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000109,GO:0000226,GO:0000278,GO:0000715,GO:0003674,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006294,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007099,GO:0007346,GO:0008150,GO:0008152,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031023,GO:0031974,GO:0031981,GO:0032465,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0046483,GO:0046872,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051276,GO:0051298,GO:0051302,GO:0051640,GO:0051641,GO:0051716,GO:0051726,GO:0060271,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070911,GO:0070925,GO:0071704,GO:0071824,GO:0071840,GO:0071942,GO:0090304,GO:0097711,GO:0098534,GO:0120031,GO:0120036,GO:0140056,GO:1901360,GO:1901987,GO:1901990,GO:1902749,GO:1903047,GO:1990391
Exons4
Evalue4.08e-94
EggNOG OGsCOG5126@1|root,KOG0028@2759|Eukaryota
Descriptioncalcium ion binding
Cds size498
COG categoryDTZ
BRITEko00000,ko03019,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig981.3.1prot_H-akashiwo_Contig981.3.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig981 251019..252946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.0591965-UTR-H-akashiwo_Contig981:250981..2510181681388067.0591965-UTR-H-akashiwo_Contig981:250981..251018Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig981 250982..251018 +
1681388067.1075838-UTR-H-akashiwo_Contig981:252946..2531151681388067.1075838-UTR-H-akashiwo_Contig981:252946..253115Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig981 252947..253115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388067.0701325-CDS-H-akashiwo_Contig981:251018..2511331681388067.0701325-CDS-H-akashiwo_Contig981:251018..251133Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig981 251019..251133 +
1681388067.0795963-CDS-H-akashiwo_Contig981:251247..2514021681388067.0795963-CDS-H-akashiwo_Contig981:251247..251402Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig981 251248..251402 +
1681388067.0888379-CDS-H-akashiwo_Contig981:251597..2517211681388067.0888379-CDS-H-akashiwo_Contig981:251597..251721Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig981 251598..251721 +
1681388067.0981576-CDS-H-akashiwo_Contig981:252842..2529461681388067.0981576-CDS-H-akashiwo_Contig981:252842..252946Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig981 252843..252946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig981.3.1

>prot_H-akashiwo_Contig981.3.1 ID=prot_H-akashiwo_Contig981.3.1|Name=mRNA_H-akashiwo_Contig981.3.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=166bp
MRRTPGRKPQKTYERPGLSEEEIEEIREAFNLFDTDGSGTIDPKELKAAM
QSLGFEAKNQTIYQMISDIDKDGNGSIDFEEFLDMMTAKMSDKDTREDIQ
KVFNLFDDDQTGHISIRNLKRVAKELGETMSEAELLEMIERADTDGDGVI
SPEEFYAIMTKKTFT*
back to top

mRNA from alignment at H-akashiwo_Contig981:250982..253115+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig981.3.1 ID=mRNA_H-akashiwo_Contig981.3.1|Name=mRNA_H-akashiwo_Contig981.3.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=2134bp|location=Sequence derived from alignment at H-akashiwo_Contig981:250982..253115+ (Heterosigma akashiwo CCMP452)
GGACGACCTCCATTCTGCCTTCAATACAGTTTAGAAAATGCGGAGAACCC
CCGGAAGAAAGCCTCAAAAGACCTATGAAAGGCCTGGTCTGAGTGAGGAA
GAAATCGAGGAAATTCGTGAAGCCTTCAACTTGTTCGATACCGATGGTTC
TGGTGAGTTCATAAACTTCATTTGTTCCTTCTTGAGCTACATACTTTCAC
GGCTTTGCAGAAACTTGAATATATAGCAGTATAGTTAGGTAACTTTTCAT
GGTATATTTATTTCAGGTACCATCGATCCGAAAGAACTGAAGGCTGCGAT
GCAGTCATTAGGTTTCGAAGCAAAGAATCAGACTATTTATCAAATGATTT
CGGACATTGATAAGGATGGAAATGGGAGCATTGATTTTGAAGAGTTCCTG
GATATGATGACCGCCAAAATGGTTCGTTAAATTAGCCTTAACAATAAAAT
TTTGGCCTTTCCTATCTATGGCTTGTTATCGACCACCTGTTAGGAAAATT
GCCTGCCTGTTCTGTTTTTTTTTAATATTAATATTAAAATATATATTTTG
TGCTTTACCCGTTATCCAGTAAGTCTGATTTTATCCCTTAAAACTTGCTA
TCGTTTTTCTTGCCAGAGTGATAAAGACACCCGTGAGGATATCCAAAAGG
TTTTCAATCTGTTTGATGATGACCAAACTGGCCACATTTCGATCCGTAAT
CTGAAGAGAGTTGCAAAGGAGCTTGGTGAAACCATGAGTGGTAAGCCACA
TAACTATCTTGCATTGTTATGACCTTCTTTTGTACAATTAAAATCATAAC
CGTTTCAAGAAAATCTGATTCCCGAAACTGATTTGGGCAAAAGTTGTTCT
TACGGCAAATCTTTCTTTCCCCTGCATCATACCAGTGAATTAAAACCTTG
GATTAGCAACATACATCTGTTTTTGGTTTATTGCTGATCTACTTTTGTAT
TCCTGGGCTATCAAAAATACCAGTGTTGAATAAGTTAGCTACAATTTCAG
TGAATGGTCCATGAGTGATGCATAAAAGCTCAGACGTATTTTCAAAGTTT
TCACATTCAAGGGCTATCAAGCTGCTTCTGAGTTACTCAAAAAGCAAAAT
GGTCTCTCAATTTTGAGAACCAAGAAGAATGTATCATTTGGTGCAGTGTG
GTGTAAGAGAAGCTTTGACAAGTGTTTTTCGGTCACTAGCACATTTAAAA
TTGCAAAAGCGATTTGCACCTAAGATCCAAACTGAAACCTTTCATTAAAA
ATTATTCTGGTTCTGATCTTTTAGATTTTTATTTCTGTGTTTTAGCATTC
ATGTGGCCAAGAAAGTGTAGATTGTAACTGTCGCTACCTGTACCCATTTT
CACCCATGTGTGTACACTTGTCTTCAAAGAGGAAGGTATCTTGTGTGTGT
TGTTTGAGAGCGGGGTGTTTAATGTCGTTCCATATGCCGGGATTCTTGCT
CTTTTGAAAGTCGCCAGGAATTTGGGCTGAAGGTGAACCGGCTTCAGTTG
AAGGTGCTGTGAATGTGCTGCAGCAGCTCATGCTGATCTCTGAAGTTTTT
TGGCAGAAAGTTGCCAGGAAGTTGGGTGGGAGGTGAACTGGTTTCAGTTC
ATCAGATGAAGGTGCTGCGAGCGTGCTGCAGTAAGTCCCGCCGATTTCCG
AGTTTTGGGGCAGAGTGCATCTCCTGTAGATAGCATTCCTGGACGGACCA
TCAAACAAAATATAAGAAACAGTCTAAGTAATTTTCTAGAAAATGATACG
CCTGTCTGGCTCCTTCTGAAACTATTGCCACTCTAGAAAGACACGTTACA
TTCAGAGTGCTCCCCTAAATGTACTTCAACTAACGTTATACCTGCCTTTT
TTGCAATACAGAGGCGGAGCTTTTGGAAATGATTGAGAGGGCAGACACAG
ATGGTGATGGAGTTATCAGCCCTGAAGAATTCTACGCCATCATGACGAAG
AAAACTTTCACATGATGAAACAGTTGTGGTTAATAGCAGTTTGGCATGCA
TTTTGGGGTTGTTGTTTACACTCACTGAGAGACAGACTGCAAGCAGCAAC
AAATTGCATGGTGGATTTCAAAAAGTGTTGTGCTGTCCTTTTTATGCCTT
CCCAACCCACACCCCCCCTCTACCTTCCCCACCC
back to top

Coding sequence (CDS) from alignment at H-akashiwo_Contig981:250982..253115+

>mRNA_H-akashiwo_Contig981.3.1 ID=mRNA_H-akashiwo_Contig981.3.1|Name=mRNA_H-akashiwo_Contig981.3.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=498bp|location=Sequence derived from alignment at H-akashiwo_Contig981:250982..253115+ (Heterosigma akashiwo CCMP452)
ATGCGGAGAACCCCCGGAAGAAAGCCTCAAAAGACCTATGAAAGGCCTGG
TCTGAGTGAGGAAGAAATCGAGGAAATTCGTGAAGCCTTCAACTTGTTCG
ATACCGATGGTTCTGGTACCATCGATCCGAAAGAACTGAAGGCTGCGATG
CAGTCATTAGGTTTCGAAGCAAAGAATCAGACTATTTATCAAATGATTTC
GGACATTGATAAGGATGGAAATGGGAGCATTGATTTTGAAGAGTTCCTGG
ATATGATGACCGCCAAAATGAGTGATAAAGACACCCGTGAGGATATCCAA
AAGGTTTTCAATCTGTTTGATGATGACCAAACTGGCCACATTTCGATCCG
TAATCTGAAGAGAGTTGCAAAGGAGCTTGGTGAAACCATGAGTGAGGCGG
AGCTTTTGGAAATGATTGAGAGGGCAGACACAGATGGTGATGGAGTTATC
AGCCCTGAAGAATTCTACGCCATCATGACGAAGAAAACTTTCACATGA
back to top