mRNA_H-akashiwo_Contig98.34.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.34.1
Unique NamemRNA_H-akashiwo_Contig98.34.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A7S2USS6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2USS6_9STRA)

HSP 1 Score: 310 bits (795), Expect = 3.950e-102
Identity = 160/247 (64.78%), Postives = 187/247 (75.71%), Query Frame = 1
Query:   94 INDPQTYPALSYAPQSSE----KKQLPLIVFLHGAGMNEQDAWN-LADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLTL 819
            + DP TY AL Y P SS     KK+LPL+V LHGAG N++D W  LA+P GEHAGLIPSL+ASG+AP ELTDNF+VVAPYS GK+SFYEEPR KLL+FIDW CS   Q      E+D  RIFLFGFSDGAT+GVELLTT RF GA++AAYGFTG LP LA+ RL  +PIWVFHS DDVIF V  SDRLV  LK  S+I  +       +R+TRF  DQEGF+G V+GHSTGITASRTP +Y+W+L+L
Sbjct:  113 VTDPDTYSALLYTPPSSSSNEPKKKLPLLVVLHGAGKNDEDIWTELANPRGEHAGLIPSLLASGRAPPELTDNFMVVAPYSFGKTSFYEEPRGKLLKFIDWICSQEAQDM----EVDRDRIFLFGFSDGATLGVELLTTLRFAGAVVAAYGFTGTLPPLAVERLETVPIWVFHSADDVIFPVACSDRLVASLK-GSNIQNN-------VRFTRFDHDQEGFTGSVQGHSTGITASRTPEIYKWMLSL 347          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A812W7U3_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812W7U3_9DINO)

HSP 1 Score: 307 bits (786), Expect = 7.030e-101
Identity = 157/272 (57.72%), Postives = 200/272 (73.53%), Query Frame = 1
Query:    4 SGAVAFSLGAFLIPITCSAEPKMPQNSLVLINDPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLTL 819
            + ++AF   A L P T  AE +  Q  LV + DP+TY AL+Y+P+   K  LPL+V L GAG N++DA +LA+  GEH GL+PSLIA G AP +LT+NF V+APY+ GK SFYEEPR+K+LQFI W CS+AG+  +G P +DP R+FLFGFSDGAT  +EL +T+RF G ++AAYGFTG+LP LAL RL  +P+WVFHS DDVIF V  SD+LV+ LKE +S          ++RYTR+ +DQEGF+G VRGHSTGITASR P +YRWLL L
Sbjct:   80 AASIAFWAAAPLRPAT--AESQSRQGELVTVRDPETYSALAYSPRDV-KGPLPLLVVLPGAGRNDKDATDLANIRGEHGGLVPSLIAQGIAPADLTENFAVLAPYAAGKKSFYEEPRKKMLQFIAWACSDAGRA-AGVPAVDPKRLFLFGFSDGATEVMELASTRRFAGCVVAAYGFTGELPRLALERLKDIPVWVFHSADDVIFPVSCSDKLVKRLKETNS--------RDVVRYTRYDKDQEGFTGSVRGHSTGITASRQPDLYRWLLQL 339          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A1Q9D336_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D336_SYMMI)

HSP 1 Score: 307 bits (786), Expect = 6.450e-100
Identity = 155/273 (56.78%), Postives = 198/273 (72.53%), Query Frame = 1
Query:    1 RSGAVAFSLGAFLIPITCSAEPKMPQNSLVLINDPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLTL 819
            R  A + + GA   P   +AE +  Q  LV + DP+TY AL+Y+P+   K  LPL+V L GAG N++DA +LA+  GEH GL PSLIA G AP +LT+NF V+APY+ GK SFYEEPR+K+LQFI W CS+AG+  +G P +D  R+FLFGFSDGAT  +EL +T+RF G ++AAYGFTG+LP LAL RL  +P+WVFHS DDVIF V  SD+LV+ LKE +S          ++RYTR+++DQEGF+G VRGHSTGITASR P +YRWLL L
Sbjct:  147 RQAAASIAFGAAAPPYPATAESQSRQGQLVTVRDPETYSALAYSPRDV-KGPLPLLVVLPGAGRNDKDATDLANIRGEHGGLAPSLIAEGIAPADLTENFAVLAPYAAGKKSFYEEPRKKMLQFIAWACSDAGRA-AGVPAVDLKRLFLFGFSDGATEVMELASTRRFAGCVVAAYGFTGELPRLALERLKDIPVWVFHSADDVIFPVSCSDKLVKRLKETNS--------RDVVRYTRYNQDQEGFTGSVRGHSTGITASRQPDLYRWLLQL 409          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A1Z5JT85_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT85_FISSO)

HSP 1 Score: 300 bits (768), Expect = 3.150e-99
Identity = 140/250 (56.00%), Postives = 186/250 (74.40%), Query Frame = 1
Query:   70 MPQNSLVLINDPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLTL 819
            +P   L +++DP TY A++Y  +   ++  PL+V LHGAG+N++DAW L +P GEHAGL+PSLIA+ KAP ELT+NFVVVAPYSQGK SFYEEPR KLL F+ W+CS+AG++ SG P  D   ++LFGFSDGATV VEL TT+ FR   +AAYGF+G  PDLA+ RL  +  WVFHS+DDVIF V+ SD+LV  L++         G  ++IRYTR+ +DQEGF+G V+GHS GITAS++  +Y W+L++
Sbjct:   27 LPDEQLFVVSDPNTYSAVTYISEGVNERPKPLLVVLHGAGVNDEDAWALTNPKGEHAGLVPSLIAANKAPPELTENFVVVAPYSQGKRSFYEEPRSKLLDFVRWFCSDAGKR-SGCPPCDQDHVYLFGFSDGATVAVELATTKMFRAVAVAAYGFSGTFPDLAMERLRDVAFWVFHSQDDVIFPVEYSDKLVASLRKR--------GDPSLIRYTRYEQDQEGFTGAVKGHSVGITASKSADLYSWMLSI 267          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A1Z5KGC9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGC9_FISSO)

HSP 1 Score: 296 bits (757), Expect = 1.470e-97
Identity = 146/270 (54.07%), Postives = 190/270 (70.37%), Query Frame = 1
Query:   10 AVAFSLGAFLIPITCSAEPKMPQNSLVLINDPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLTL 819
            A  F+ G  L+     A    P   L +++DP TY A+++ P+   ++  PL+V LHGAG+N +DAW L +P GEHAGLIPSLIA+ KAP ELT+NFVVVAPYSQGK SFYEEPR K+L F+ W+CS+AG++ SG P  D   I+LFGFSDGATV VEL TT+ FR   +AA+GF+G LPDLAL RL  +  WVFHS+DDVIF V+  D+LV  L +         G  ++IRYTR+  DQEGF+G V+GHS GITAS++  +Y W+L++
Sbjct:   10 AAGFTTGCQLLQQPADA---WPNERLFVVSDPNTYSAVTFIPEGVNERPKPLLVVLHGAGVNNEDAWALTNPKGEHAGLIPSLIAANKAPPELTENFVVVAPYSQGKRSFYEEPRTKILDFVRWFCSDAGRR-SGCPPCDKDHIYLFGFSDGATVAVELATTKMFRAVAVAAFGFSGTLPDLALERLREVAFWVFHSQDDVIFPVEYGDKLVGSLLKR--------GDPSLIRYTRYERDQEGFTGVVKGHSVGITASKSADLYSWMLSI 267          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: B7FZS5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FZS5_PHATC)

HSP 1 Score: 293 bits (750), Expect = 3.000e-96
Identity = 145/239 (60.67%), Postives = 177/239 (74.06%), Query Frame = 1
Query:  100 DPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLT 816
            D  TY AL Y P+  E+  LPL+V LH AG N++  W+LADP GEHAGL PSL+ +G+AP  L D F +VAPYS GK SFYEEPR K+LQFI+W CS AGQ+ +G P +DP+ ++LFGFSDGAT+ VEL TT+RFR   IAAYGF+G LP LAL RL G+P WVFHS DDVIF V  SDRLV  L+ A++       ++ IIRYTR+ +DQEGF G VRGHSTGITA++ P VY +LLT
Sbjct:   50 DDATYAALVYEPKRKEQTPLPLLVVLHEAGRNDETVWSLADPLGEHAGLAPSLLFTGRAPTALADKFAMVAPYSAGKRSFYEEPRSKILQFIEWVCSEAGQR-AGCPYVDPNSVYLFGFSDGATLAVELATTRRFRACTIAAYGFSGTLPKLALDRLKGIPFWVFHSADDVIFPVVYSDRLVTSLRTANT------ENTEIIRYTRYDKDQEGFEGSVRGHSTGITATKLPDVYEFLLT 281          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A7S2H7M5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H7M5_9STRA)

HSP 1 Score: 285 bits (730), Expect = 4.860e-91
Identity = 151/270 (55.93%), Postives = 186/270 (68.89%), Query Frame = 1
Query:   85 LVLINDPQTYPALSYAPQSSEK------KQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQS--------------GRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASS-----IAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLLTL 819
            L  I DP TY +L Y   +++       K LPLIVFLHGAG NE    NLA+P GEH GL+PSLIASGKAP  L  NFVVV PYSQ K SFYEEPR KLL F+DW+ ++  QQ +              G  +ID S+IFLFGFSDGAT+ VELLTT++F GA+IA+YGF+G LP  AL RL GLP+WV H  +DVIF V+ SD LV  L++ +      I  +DEG +A+IRYTR+ +DQEGF+GRV+GHS GITAS+   VYRWLL++
Sbjct:  177 LQTITDPNTYSSLCYVSTNNKSXXXXXXKPLPLIVFLHGAGKNELPISNLANPAGEHGGLLPSLIASGKAPDTLLQNFVVVCPYSQNKRSFYEEPRGKLLSFLDWFVTDGIQQVATNSKGTTXXXXXXXGVIKIDTSKIFLFGFSDGATLSVELLTTRKFAGAVIASYGFSGILPARALERLKGLPVWVLHCAEDVIFDVRFSDLLVASLRKVNGEDDKVIDGNDEGKNALIRYTRYEKDQEGFTGRVKGHSVGITASKNEDVYRWLLSI 446          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A448ZSW4_9STRA (Abhydrolase_2 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSW4_9STRA)

HSP 1 Score: 275 bits (702), Expect = 1.990e-88
Identity = 143/268 (53.36%), Postives = 187/268 (69.78%), Query Frame = 1
Query:   25 LGAFLIPITCSAE--PKMPQNSLVLINDPQTYPALSYAPQSSEKKQ-LPLIVFLHGAGMNEQDAW-NLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGK-LPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLL 813
            L + L+  +  +E   K P   L ++NDP TY ALSYAP S+   +  PLI+ LHGAG N++D   +LADP+GEH+GLIPSLIAS +AP  L DNF V+APYS GK SFY + R K+LQF+DW   N   ++      DP+RI LFGFSDGATV VELLTT+RF   +I +YG++GK LP  AL RL+ +PIWVFHS+DDVIF V+NSDRLVQ L+  ++I K+     +I++Y+RF +D E     VRGHS GITASR+  +Y W++
Sbjct:   51 LSSILVSASIESEVTDKNPFFPLKVVNDPNTYSALSYAPPSNANSESTPLILVLHGAGKNDKDILLDLADPSGEHSGLIPSLIASHRAPPNLLDNFCVLAPYSFGKPSFYNDSRGKILQFVDWAIRNQNTEELPL-RFDPNRIILFGFSDGATVAVELLTTKRFAAGVICSYGYSGKTLPSQALERLSDIPIWVFHSKDDVIFDVRNSDRLVQQLESVNTITKNGSTDGSILKYSRFDKDPENLPSXVRGHSMGITASRSSDLYDWMI 317          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A812N2F5_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812N2F5_9DINO)

HSP 1 Score: 287 bits (735), Expect = 5.600e-86
Identity = 148/267 (55.43%), Postives = 191/267 (71.54%), Query Frame = 1
Query:    1 RSGAVAFSLGAFLIPITCSAEPKMPQNSLVLINDPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGIT--ASRTPG 795
            R    + + GA   P   +AE +  Q  LV + DP+TY AL Y+P+   K  LPL+V L GAG N++DA +LA+  GEH GL PSLIA G AP +LT+NF V+APY+ GK+SFYEEPR+K+LQFI W CS+AG+  +G P +DP R+FLFGFSDGAT  +EL +T+RF G ++AAYGFTG+LP LAL RL  +P+WVFHS DDVIF V  SD+LV+ LKE +S          ++RYTR+ +DQEGF+G VRGHSTGIT  A++ PG
Sbjct:   82 RHTTASIAFGAAAPPHPATAESQRRQGDLVTVRDPETYSALVYSPRDV-KGPLPLLVVLPGAGRNDKDATDLANIRGEHGGLAPSLIAEGIAPADLTENFAVLAPYAAGKNSFYEEPRKKMLQFIAWACSDAGRA-AGVPAVDPKRLFLFGFSDGATEVMELASTRRFAGCVVAAYGFTGELPRLALERLKDIPVWVFHSADDVIFPVSCSDKLVKRLKETNS--------RDVVRYTRYDKDQEGFTGSVRGHSTGITDEAAKLPG 338          
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Match: A0A1E7FSS5_9STRA (Abhydrolase_2 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSS5_9STRA)

HSP 1 Score: 265 bits (676), Expect = 3.430e-85
Identity = 134/248 (54.03%), Postives = 176/248 (70.97%), Query Frame = 1
Query:   85 LVLINDPQTYPALSYAPQSSEKKQLPLIVFLHGAGMNEQDAW-NLADPNGEHAGLIPSLIASGKAPKELTDNFVVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLFGFSDGATVGVELLTTQRFRGAIIAAYGFTGK-LPDLALRRLAGLPIWVFHSEDDVIFSVKNSDRLVQMLKEASS---IAKDDEGSSAIIRYTRFSEDQEGFSGRVRGHSTGITASRTPGVYRWLL 813
            L ++ DPQTY AL+YAP ++ +K  PLI+ LHGAG N++D   +LADP GEHAGLIPSLIAS  AP  L +NF V+APYS GKSSFYE+PR+K+L F+DW   N   +     + DP+RI LFGFSDGATV +ELLTT+RF   +I +YG++GK LP  AL+RL+ LPIWVFHS+DDVIF V NSDRLVQ L+  ++             I++Y+R++ D E    R +GHS GITAS++  +Y W++
Sbjct:   27 LKVVTDPQTYSALAYAPPNNNRKT-PLILVLHGAGKNDKDILRDLADPYGEHAGLIPSLIASHTAPSNLLNNFCVLAPYSYGKSSFYEDPRKKILDFVDWAIRNQNTEDVLPFQFDPNRIILFGFSDGATVAIELLTTRRFSKGVICSYGYSGKSLPSTALQRLSNLPIWVFHSQDDVIFDVHNSDRLVQQLEMVNNNXXXXXXXXXDKHIVQYSRYNRDPENLPARAKGHSMGITASKSSDLYDWMI 273          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2USS6_9STRA3.950e-10264.78Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A812W7U3_9DINO7.030e-10157.72Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A1Q9D336_SYMMI6.450e-10056.78Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A1Z5JT85_FISSO3.150e-9956.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KGC9_FISSO1.470e-9754.07Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
B7FZS5_PHATC3.000e-9660.67Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2H7M5_9STRA4.860e-9155.93Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A448ZSW4_9STRA1.990e-8853.36Abhydrolase_2 domain-containing protein n=1 Tax=Ps... [more]
A0A812N2F5_9DINO5.600e-8655.43Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A1E7FSS5_9STRA3.430e-8554.03Abhydrolase_2 domain-containing protein n=1 Tax=Fr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:1529746..1530567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr35564
PFAMsAbhydrolase_2
Model size822
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons1
Evalue4.91e-97
EggNOG OGs2E0QI@1|root,2S84G@2759|Eukaryota,2XGWQ@2836|Bacillariophyta
DescriptionPhospholipase/Carboxylesterase
Cds size822
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388066.4662743-CDS-H-akashiwo_Contig98:1529745..15305671681388066.4662743-CDS-H-akashiwo_Contig98:1529745..1530567Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1529746..1530567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.34.1prot_H-akashiwo_Contig98.34.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 1529746..1530567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.34.1

>prot_H-akashiwo_Contig98.34.1 ID=prot_H-akashiwo_Contig98.34.1|Name=mRNA_H-akashiwo_Contig98.34.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=274bp
RSGAVAFSLGAFLIPITCSAEPKMPQNSLVLINDPQTYPALSYAPQSSEK
KQLPLIVFLHGAGMNEQDAWNLADPNGEHAGLIPSLIASGKAPKELTDNF
VVVAPYSQGKSSFYEEPRRKLLQFIDWYCSNAGQQQSGRPEIDPSRIFLF
GFSDGATVGVELLTTQRFRGAIIAAYGFTGKLPDLALRRLAGLPIWVFHS
EDDVIFSVKNSDRLVQMLKEASSIAKDDEGSSAIIRYTRFSEDQEGFSGR
VRGHSTGITASRTPGVYRWLLTL*
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mRNA from alignment at H-akashiwo_Contig98:1529746..1530567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.34.1 ID=mRNA_H-akashiwo_Contig98.34.1|Name=mRNA_H-akashiwo_Contig98.34.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=822bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1529746..1530567+ (Heterosigma akashiwo CCMP452)
AGAAGCGGTGCCGTTGCTTTCAGTCTGGGTGCTTTTTTAATTCCGATTAC TTGTTCAGCTGAACCTAAGATGCCCCAAAACAGTTTGGTGCTGATCAATG ATCCTCAAACTTATCCTGCCCTGTCTTATGCACCACAAAGCTCAGAAAAA AAGCAACTGCCGTTGATCGTCTTCTTGCATGGCGCTGGCATGAATGAACA GGATGCGTGGAATCTTGCAGATCCCAATGGTGAGCATGCTGGTCTGATTC CCAGCTTGATCGCATCTGGTAAGGCTCCTAAGGAATTAACGGACAATTTT GTTGTCGTTGCACCCTACTCACAAGGCAAAAGCAGTTTTTATGAGGAGCC CCGCAGGAAACTGCTGCAGTTCATAGATTGGTACTGCAGTAATGCGGGGC AACAGCAATCTGGGAGGCCAGAGATTGACCCAAGCAGGATATTCTTGTTC GGCTTCAGCGATGGGGCTACAGTGGGGGTTGAGTTGTTGACTACTCAACG GTTTCGTGGAGCAATAATTGCAGCCTATGGCTTTACTGGTAAACTTCCAG ATCTTGCTCTCAGAAGACTTGCTGGTCTTCCAATATGGGTTTTTCATTCA GAAGATGATGTTATTTTTTCAGTCAAAAACAGTGATAGGTTGGTACAGAT GCTGAAGGAAGCCAGCAGTATTGCCAAGGATGATGAGGGTTCCAGTGCAA TAATCCGCTACACACGATTCAGCGAAGACCAGGAGGGTTTCTCTGGAAGG GTTCGTGGACATAGCACAGGTATTACAGCTTCAAGGACTCCAGGGGTATA TAGGTGGCTTCTTACCCTCTAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:1529746..1530567+

>mRNA_H-akashiwo_Contig98.34.1 ID=mRNA_H-akashiwo_Contig98.34.1|Name=mRNA_H-akashiwo_Contig98.34.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=822bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1529746..1530567+ (Heterosigma akashiwo CCMP452)
AGAAGCGGTGCCGTTGCTTTCAGTCTGGGTGCTTTTTTAATTCCGATTAC
TTGTTCAGCTGAACCTAAGATGCCCCAAAACAGTTTGGTGCTGATCAATG
ATCCTCAAACTTATCCTGCCCTGTCTTATGCACCACAAAGCTCAGAAAAA
AAGCAACTGCCGTTGATCGTCTTCTTGCATGGCGCTGGCATGAATGAACA
GGATGCGTGGAATCTTGCAGATCCCAATGGTGAGCATGCTGGTCTGATTC
CCAGCTTGATCGCATCTGGTAAGGCTCCTAAGGAATTAACGGACAATTTT
GTTGTCGTTGCACCCTACTCACAAGGCAAAAGCAGTTTTTATGAGGAGCC
CCGCAGGAAACTGCTGCAGTTCATAGATTGGTACTGCAGTAATGCGGGGC
AACAGCAATCTGGGAGGCCAGAGATTGACCCAAGCAGGATATTCTTGTTC
GGCTTCAGCGATGGGGCTACAGTGGGGGTTGAGTTGTTGACTACTCAACG
GTTTCGTGGAGCAATAATTGCAGCCTATGGCTTTACTGGTAAACTTCCAG
ATCTTGCTCTCAGAAGACTTGCTGGTCTTCCAATATGGGTTTTTCATTCA
GAAGATGATGTTATTTTTTCAGTCAAAAACAGTGATAGGTTGGTACAGAT
GCTGAAGGAAGCCAGCAGTATTGCCAAGGATGATGAGGGTTCCAGTGCAA
TAATCCGCTACACACGATTCAGCGAAGACCAGGAGGGTTTCTCTGGAAGG
GTTCGTGGACATAGCACAGGTATTACAGCTTCAAGGACTCCAGGGGTATA
TAGGTGGCTTCTTACCCTCTAA
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