mRNA_H-akashiwo_Contig98.28.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.28.1
Unique NamemRNA_H-akashiwo_Contig98.28.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.480e-11
Identity = 27/55 (49.09%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:   76 TPRVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            +PRV  ++ +D   K +R +  G D LQ+ISDFD+TLTKF VNG++G SCH +++
Sbjct:   16 SPRVLFRDAEDFERKWQRIVAGGVDRLQIISDFDFTLTKFWVNGKRGDSCHAVID 70
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A0G4EJZ4_VITBC (5'-nucleotidase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJZ4_VITBC)

HSP 1 Score: 63.5 bits (153), Expect = 5.550e-10
Identity = 26/63 (41.27%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   52 NDTSSLLTTPRVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            N    L  TP + +KN +  + K++RF  DG D LQ+I+DFD TLT+  ++G++ +SCH ++E
Sbjct:   11 NGALPLRLTPNIRVKNAEQLLEKLKRFRRDGTDALQVITDFDATLTQVFIDGQRASSCHSVVE 73
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A7S3UTG8_HETAK (5'-nucleotidase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTG8_HETAK)

HSP 1 Score: 61.2 bits (147), Expect = 3.590e-9
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:   85 VFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGIL 237
            V IK+ D    K+ RF  DG   +Q+ISDFDYTLTKF+ +G+ G S HG+L
Sbjct:   65 VTIKDRDAVFGKLERFFADGPGKIQIISDFDYTLTKFHYDGKMGKSTHGVL 115
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: UPI000F556A1A (cytosolic 5'-nucleotidase 3-like isoform X1 n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=UPI000F556A1A)

HSP 1 Score: 60.5 bits (145), Expect = 6.640e-9
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   79 PRVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            P V+I+N      K+++  E G + LQ+ISDFD TLTKF +NG KG + +G++E
Sbjct:   50 PNVYIRNYVGVREKLKKLYEGGPEKLQIISDFDKTLTKFVINGEKGCTVYGVIE 103
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A3M6TID4_POCDA (5'-nucleotidase n=1 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TID4_POCDA)

HSP 1 Score: 60.5 bits (145), Expect = 7.750e-9
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1 
Query:   79 PRVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            P V+I+N      K+++  E G + LQ+ISDFD TLTKF +NG KG + +G++E
Sbjct:   52 PNVYIRNYVGVREKLKKLYEGGPEKLQIISDFDKTLTKFVINGEKGCTVYGVIE 105
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A388LLW2_CHABU (5'-nucleotidase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LLW2_CHABU)

HSP 1 Score: 60.5 bits (145), Expect = 7.830e-9
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:   79 PRVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            PRV I NV++   K +     G   LQ+I+DFD TLTKF VNGRKG +CH +L 
Sbjct: 1341 PRVLIGNVEELERKKKAIRLGGRSKLQVIADFDMTLTKFRVNGRKGQTCHALLS 1394
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A0D2U9Z3_CAPO3 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9Z3_CAPO3)

HSP 1 Score: 59.7 bits (143), Expect = 1.360e-8
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   82 RVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            R+ I N +   AK+   ++ G  +LQ+ISDFD TLT+F  NG++GAS HGI+E
Sbjct:  107 RIIIGNSEAFQAKLEAIVQGGPQSLQVISDFDMTLTRFLYNGKRGASSHGIIE 159
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: UPI0001FE3700 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE3700)

HSP 1 Score: 59.7 bits (143), Expect = 1.380e-8
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   82 RVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            R+ I N +   AK+   ++ G  +LQ+ISDFD TLT+F  NG++GAS HGI+E
Sbjct:  144 RIIIGNSEAFQAKLEAIVQGGPQSLQVISDFDMTLTRFLYNGKRGASSHGIIE 196
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: A0A3P7LFT8_DIBLA (5'-nucleotidase n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7LFT8_DIBLA)

HSP 1 Score: 58.9 bits (141), Expect = 2.250e-8
Identity = 28/53 (52.83%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:   82 RVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            ++ IKN D    K+ R I  G +NLQ+ISDFD+TL+KF  NG +  SCHGI E
Sbjct:    5 QLHIKNPDVVKRKLTRIIALGKNNLQVISDFDWTLSKFYHNGERYPSCHGIFE 57
[Close]
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Match: UPI0009E22FA7 (cytosolic 5'-nucleotidase 3-like isoform X1 n=2 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E22FA7)

HSP 1 Score: 58.9 bits (141), Expect = 2.370e-8
Identity = 24/54 (44.44%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   79 PRVFIKNVDDTMAKIRRFIEDGADNLQLISDFDYTLTKFNVNGRKGASCHGILE 240
            P V++++      K++   E G++ LQ+ISDFD TLTKFN+NG KG + +G++E
Sbjct:   50 PNVYMRDSVHVREKLKVLYEGGSEKLQVISDFDKTLTKFNINGEKGCTVYGVIE 103
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JI70_9PHAE3.480e-1149.095'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
A0A0G4EJZ4_VITBC5.550e-1041.275'-nucleotidase n=1 Tax=Vitrella brassicaformis (s... [more]
A0A7S3UTG8_HETAK3.590e-952.945'-nucleotidase (Fragment) n=1 Tax=Heterosigma aka... [more]
UPI000F556A1A6.640e-946.30cytosolic 5'-nucleotidase 3-like isoform X1 n=2 Ta... [more]
A0A3M6TID4_POCDA7.750e-946.305'-nucleotidase n=1 Tax=Pocillopora damicornis Tax... [more]
A0A388LLW2_CHABU7.830e-951.855'-nucleotidase n=1 Tax=Chara braunii TaxID=69332 ... [more]
A0A0D2U9Z3_CAPO31.360e-849.065'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
UPI0001FE37001.380e-849.065'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
A0A3P7LFT8_DIBLA2.250e-852.835'-nucleotidase n=1 Tax=Dibothriocephalus latus Ta... [more]
UPI0009E22FA72.370e-844.44cytosolic 5'-nucleotidase 3-like isoform X1 n=2 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:1451986..1453613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog28583.AMAG_02205T0
PFAMsUMPH-1
Model size241
Max annot lvl4751|Fungi
Hectar predicted targeting categorysignal peptide
Exons3
Evalue1.54e-09
EggNOG OGsKOG3128@1|root,KOG3128@2759|Eukaryota,39AX7@33154|Opisthokonta,3P3CG@4751|Fungi
DescriptionHAD hydrolase, family IE
Cds size240
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388066.227504-CDS-H-akashiwo_Contig98:1451985..14520331681388066.227504-CDS-H-akashiwo_Contig98:1451985..1452033Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1451986..1452033 -
1681388066.2392325-CDS-H-akashiwo_Contig98:1453251..14533151681388066.2392325-CDS-H-akashiwo_Contig98:1453251..1453315Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1453252..1453315 -
1681388066.2503638-CDS-H-akashiwo_Contig98:1453485..14536131681388066.2503638-CDS-H-akashiwo_Contig98:1453485..1453613Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 1453486..1453613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.28.1prot_H-akashiwo_Contig98.28.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 1451986..1453613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.28.1

>prot_H-akashiwo_Contig98.28.1 ID=prot_H-akashiwo_Contig98.28.1|Name=mRNA_H-akashiwo_Contig98.28.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=80bp
MGWIHLLVPGIVFLAVMNDTSSLLTTPRVFIKNVDDTMAKIRRFIEDGAD
NLQLISDFDYTLTKFNVNGRKGASCHGILE
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mRNA from alignment at H-akashiwo_Contig98:1451986..1453613-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.28.1 ID=mRNA_H-akashiwo_Contig98.28.1|Name=mRNA_H-akashiwo_Contig98.28.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=1628bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1451986..1453613- (Heterosigma akashiwo CCMP452)
ATGGGCTGGATCCACCTACTAGTGCCTGGCATTGTTTTTTTGGCAGTTAT
GAACGATACGAGCTCTTTATTGACTACACCTAGGGTGTTCATAAAAAATG
TTGACGACACTATGGCTAAAATAAGGAGGTAGGGAAGCTGTTGACACCTA
AATTCAATCTGATCATCATGAATGACCTAAGAAAATATATATGTAGGAAC
GGCCAATGCACCTTGCGAAGATGGACCTGATTTTCTTTTTGATATCAGAT
ATATTAAATATATATCTTGAGATTCCTTCTCTTTCAATCAATTTTCAGGT
TTATAGAGGATGGTGCTGACAATCTCCAGCTGATTTCCGATTTTGATTAC
ACTTTGACCAAGGTTCATGAATAAGACCCTTTTGCTTCCGCCTGTAACCA
ACTGAATAAGTGTGTACTTGTATACCAAAATGTTGAAAAAATGGCTTTCA
TCACTGGGCACAAAAGTAAAGTCACAGTCCAGTTTATAGTTAGGGGTCGT
AAATTCATGCCATTATCAGAGGGCAGAGGGGTCGGGGTCGGGGGCGGGTT
GGGGTTGTGACATGATAACTTCAGAGAAAAAGAGGAAGAGATGAAAAGGG
GAATTCAAAGGGAAAGGAGGGAAGTTAAATGCTGACTTGGGGGTGGTGGG
AGGTGGGAGGTGGGGGGGGGATCAGATTCCAGAATATTTGACCGACCTTT
TCAAATGTTACTGCTACCTCTGCTTCAGTAAAAAAATCTATGCATGTGTA
ATAAATGAATTTGAAAAGTTCAGAGTAGTATAACGCAACAACAACAAAAA
AAAGTGTCATATATATGACATGTTGTTGTATAATAATATATGATAGGTGC
TGTAAAATGTATGTTTTTTTTAATGGCGTGTTGTATAATATATGTATACT
ATAGGTACAGTAAAATGTACTTTATTATTATTATTTTTTATACGTTCTCA
TGCCTCATCATATCCTGGGGAAGGTCCTCTACGCCAGCCGACCGTCATGT
TGAGCCATCTCTGAGCTTGTCGATGTGAACCTTGTAATGTTAACGCTCGT
ATCATCGCGCCTTCCAATGCTCGCGAACATCCCTTTGTAAAATGATATCA
TCATAATATATATTATATATATATCTATGCTACTGCTACCTCTGCTTCAG
TAAAAAAATCTATGCATGTGTAATCAATGAATTTGAAAAGTTCAGAGTAG
TATAACGCAACAACAACAAAAAAAGTGTCATATATGACATGTTGTTGTAT
AATAATATATGATAGGTGATGTAAAATGTATGTTTTTTTTTTATGGCGTG
TTGTATAATATATACTATAGGTACAGTAAAATGTATTTTATTATTATTAT
TTTTTATACGTTCTCATGCCTCATCATATCCTGGGGAAGGTCCTCTACGC
CAGCCGACCGTCATGTTGAGCCATCTCTGAGCTTGTCGATGTGAACCTTG
TAATGTTAACGCCAGATTATCATCGCCTTCCAACGCCGCGAACATCCCTT
TGTAAAATGATATCATCATAATATATATTATATATATATATATATATATG
CTTCTATATGCTGTGGCTTAAAATTCTCAGTTCAATGTGAATGGGAGAAA
AGGTGCAAGCTGTCATGGGATCTTAGAA
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:1451986..1453613-

>mRNA_H-akashiwo_Contig98.28.1 ID=mRNA_H-akashiwo_Contig98.28.1|Name=mRNA_H-akashiwo_Contig98.28.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=240bp|location=Sequence derived from alignment at H-akashiwo_Contig98:1451986..1453613- (Heterosigma akashiwo CCMP452)
ATGGGCTGGATCCACCTACTAGTGCCTGGCATTGTTTTTTTGGCAGTTAT
GAACGATACGAGCTCTTTATTGACTACACCTAGGGTGTTCATAAAAAATG
TTGACGACACTATGGCTAAAATAAGGAGGTTTATAGAGGATGGTGCTGAC
AATCTCCAGCTGATTTCCGATTTTGATTACACTTTGACCAAGTTCAATGT
GAATGGGAGAAAAGGTGCAAGCTGTCATGGGATCTTAGAA
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