mRNA_H-akashiwo_Contig98.16.1 (mRNA) Heterosigma akashiwo CCMP452

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-akashiwo_Contig98.16.1
Unique NamemRNA_H-akashiwo_Contig98.16.1
TypemRNA
OrganismHeterosigma akashiwo CCMP452 (Heterosigma akashiwo CCMP452)
Homology
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A7S3UW32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW32_HETAK)

HSP 1 Score: 537 bits (1383), Expect = 1.090e-189
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 1
Query:    1 QTLAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDREEGATVRAFREAFTDEE 840
            QTLAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDREEGATVRAFREAFTDEE
Sbjct:  158 QTLAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDREEGATVRAFREAFTDEE 437          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A3M2LU51_9ACTN (TIGR02452 family protein n=1 Tax=Actinomadura harenae TaxID=2483351 RepID=A0A3M2LU51_9ACTN)

HSP 1 Score: 212 bits (539), Expect = 2.730e-64
Identity = 139/280 (49.64%), Postives = 169/280 (60.36%), Query Frame = 1
Query:   10 AEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDD-PTLLEFVPWRRHET--TRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAAL---SGPFAAVFEEVVFAIKDREEGAT-----VRAF 816
            A +T++ILE   Y       VDLS  L ++VDGT+ H P++   +L  +P    +   TR+ V+ E+T+ A  RL        +G+    ALNFASAKNPGGGFL GA+AQEE LAR+S L+A   A  +R YY  +R   D LYTDH+IYSPGVP FR   GALL  P   A +T+PAPNRG            A+   LR RA +VLAAAA HGH R+VLGAWGCGVFRNDP EVA  F AAL    GPFA  FE VV A+ D   G+      VRAF
Sbjct:   10 ARQTLEILERGGYRAPSGHEVDLSGALRASVDGTVLHRPEELAAMLSLLPPVADDAPRTRVEVTTETTLQAARRLGE-----GDGTEDPLALNFASAKNPGGGFLNGAHAQEEGLARASGLYASQRA--AREYYEVHRELRDPLYTDHMIYSPGVPVFRTDTGALLDEPYSVAFITSPAPNRGATRDDDKLA---ALPGVLRQRALKVLAAAAAHGHRRIVLGAWGCGVFRNDPSEVAEAFAAALRPDGGPFARRFETVVLAVYDTAPGSPRLAPFVRAF 279          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A7U3VLA6_9ACTN (DUF2263 domain-containing protein n=1 Tax=Streptomyces sp. SN-593 TaxID=659352 RepID=A0A7U3VLA6_9ACTN)

HSP 1 Score: 209 bits (531), Expect = 4.640e-63
Identity = 136/274 (49.64%), Postives = 168/274 (61.31%), Query Frame = 1
Query:    4 TLAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLT-APQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGP---FAAVFEEVVFAIKDREEGATVRA 813
            ++A E  +I+ E  Y   +   VDL+ P+  A DGT  + P    + +     R   TR +V+ ES+ +A+ RL       AEG   VA L+FASA+NPGGG+LRGA AQEEAL R+SAL+ CL  AP+   YYA +R   D  Y+D +I+SPGVP FR   GALLARP  A  + +PAPN GV  R  P    + V  AL VRA RVL  AA HG+ RLVLGAWGCGVFRNDP  VAG F AAL GP   FA V +E VFA+ DR   +  RA
Sbjct:    7 SIARENERIVAEGGYTGPDGRRVDLAGPVARAADGTAVYGPGPVAVPDTAS--RGPGTRCAVTPESSTEAVRRLV------AEGEGPVAVLDFASARNPGGGYLRGAQAQEEALCRASALYPCLLRAPE---YYAHHREVRDPFYSDRVIHSPGVPVFRADSGALLARPFTAGFLASPAPNAGVIARTMPERVPE-VGPALAVRAERVLEVAAAHGYRRLVLGAWGCGVFRNDPAVVAGAF-AALLGPGGRFAPVVDEAVFAVLDRRADSPTRA 267          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: E8UB92_DEIML (DUF2263 domain-containing protein n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) TaxID=709986 RepID=E8UB92_DEIML)

HSP 1 Score: 208 bits (530), Expect = 5.480e-63
Identity = 138/276 (50.00%), Postives = 170/276 (61.59%), Query Frame = 1
Query:   10 AEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDP----TLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDREEGA-TVRAFRE 822
            A+ET+ IL+   +   E   VD+   LV+A  GT+ + P D     T L   P  R   T + V+ E+T+  +  L    +  A+G   V ALNFASAKNPGGGF+ G+ AQEE+LAR++ L+  LT P +  YY ANR     LYTDH++YSPGVP FRD   AL A    AA VTAPAPN G   R+ P    + V A LR RA+RVL A A HGH R+VLGAWGCGVFRNDPR VAGVFRA L      VFE+V FA+ D   GA T R+F+E
Sbjct:   10 AQETLHILDTGTFTLGE-RTVDVRAELVAARAGTVLYRPQDEAVLATALRDAPRGR---TLVEVTNETTLAGVRAL----AVGADGE--VGALNFASAKNPGGGFIGGSQAQEESLARATGLYHALTGPVAEAYYTANRACGTALYTDHVLYSPGVPVFRDDADALRADVVRAAFVTAPAPNAGAVARNEPERAGE-VTAVLRARAARVLGAFARHGHRRIVLGAWGCGVFRNDPRVVAGVFRALLDNEARGVFEQVRFAVLDAAPGAPTWRSFQE 274          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: L7UJ20_MYXSD (DUF2263 domain-containing protein n=2 Tax=Myxococcus TaxID=32 RepID=L7UJ20_MYXSD)

HSP 1 Score: 208 bits (529), Expect = 6.080e-63
Identity = 141/276 (51.09%), Postives = 168/276 (60.87%), Query Frame = 1
Query:    7 LAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDRE-EGATVRAFREAFT 831
            LA+ET++I EE  Y+      V L + +  AV+GT+ + P D   L  VP       RI V+ E T  A  RL        EG + +AALNFASAKNPGGGFL GA AQEE LAR SAL+ CL     R YY  NR     LYTDHLIYSP VPFFRD    LL  P + +V+T PAPN GVA R  P G    V A LR RA +VL AAA  GH  LVLGAWGCGVFRN+P EVAG F +AL+   +  F  VVFA+ +R  +G  +RAF+E F+
Sbjct:    6 LAQETVRITEEGTYVAPSGRRVVLGDSVARAVEGTVLYRPGDFGPL-VVPEGVPTPPRIEVTGEKTGQAARRLVE------EGETRIAALNFASAKNPGGGFLGGAKAQEEDLARCSALYPCLLT--QREYYDVNRAESSPLYTDHLIYSPDVPFFRDDALELLEEPFLLSVLTMPAPNAGVALRENP-GLRRQVHAVLRARALKVLQAAAREGHRVLVLGAWGCGVFRNEPAEVAGAFSSALA-TLSGAFSRVVFAVYERGGDGPNLRAFQEHFS 270          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: UPI001F42C589 (TIGR02452 family protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F42C589)

HSP 1 Score: 208 bits (529), Expect = 6.660e-63
Identity = 139/279 (49.82%), Postives = 170/279 (60.93%), Query Frame = 1
Query:    7 LAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLL----EFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDRE-EGATVRAFREAF 828
            LA E+++I+E   Y+      VDL + +  AV+GT  ++P+D + L    +F P R   + RI V+ E T  A  RL        EG + VAALNFASA+NPGGGFL GA AQEE LAR SAL+ CL +     YYAANR     LYTDH+IYSP VPFFRD   ALL RP   ++VTAPAPN GVA R       D +   LR RA +VL   A HGH+ LVLGAWGCGVFRN+P +VA  F  AL       FE VVFA+ +R  +G  +RAFR  F
Sbjct:    6 LARESLRIMEGGTYVAPSGGSVDLRDAVARAVEGTTLYAPEDFSGLRVAGQFEPAR---SPRIEVTAEKTGAAARRLVE-----EEGLTRVAALNFASARNPGGGFLGGAKAQEEDLARCSALYVCLLSQPD--YYAANRAAPSALYTDHVIYSPDVPFFRDESLALLERPFAVSLVTAPAPNAGVARREGA-DSMDRLDGVLRARARKVLQVLAHHGHTTLVLGAWGCGVFRNEPTDVARAFARALES-LPGAFERVVFAVYERGGDGPNLRAFRAYF 272          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A1D8GA77_9ACTN (DUF2263 domain-containing protein n=5 Tax=Streptomyces TaxID=1883 RepID=A0A1D8GA77_9ACTN)

HSP 1 Score: 207 bits (526), Expect = 2.130e-62
Identity = 138/277 (49.82%), Postives = 170/277 (61.37%), Query Frame = 1
Query:    7 LAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGP--FAAVFEEVVFAIKDR-EEGATVRAFREAF 828
            +A+ET KI+    Y      +VD++E +  A++GT  H P  P   E    R   + R+ V+ ES+ +A  RL      +A+  S VA LNFASA+NPGGG+L GA AQ EAL R+SALHA L   ++  YY  +R   D  YTD +I+SPGVP FRD  G LL RP     +T+PAPN GV     P      + AAL  RA RVL  A  HG+ RLVLGAWGCGVFRNDP EVAG FRA L+G   FA  F+EVVFA+ DR  EG T+ AFREAF
Sbjct:   11 IAQETEKIVAAGRYRTAAG-VVDIAEQVARALEGTTLHGPG-PVPAEPGTGR---SGRVEVTGESSTEAARRLT-----AADPGSPVAVLNFASARNPGGGYLNGAQAQAEALCRASALHATLL--RAPAYYEHHRADRDPFYTDRVIHSPGVPVFRDDRGRLLDRPFAVGFLTSPAPNAGVVRARTPHLAAR-IPAALASRAERVLETAVAHGYRRLVLGAWGCGVFRNDPAEVAGAFRALLAGEGRFAGHFDEVVFAVLDRTREGRTLAAFREAF 274          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A1D3DM26_9ACTN (TIGR02452 family protein n=1 Tax=Streptomyces thermolilacinus SPC6 TaxID=1306406 RepID=A0A1D3DM26_9ACTN)

HSP 1 Score: 206 bits (524), Expect = 3.890e-62
Identity = 142/278 (51.08%), Postives = 170/278 (61.15%), Query Frame = 1
Query:    7 LAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLT-APQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGP--FAAVFEEVVFAIKDR-EEGATVRAFREAF 828
            +A ET +I+    Y     E V +++ +  AVDGT  H PD    +   P     +TRI V+ EST +A  RL     A+A     VAALNFASA+NPGGG+L GA AQEEAL R+SAL+A L  AP+   YY  +R   D LYTD +I+SPGVP FRD  G LL RP     +T+PAPN GV     P    D V AAL  RA RVL  A  HG+ R+VLGAWGCGVFRNDP EVAG FRA L+G   FA  F+EVVF + DR  E  T+ AFR AF
Sbjct:    8 IARETEQIVAAGRYRTPAGE-VRIADLVAKAVDGTTLHGPDP---VPAAPGTGR-STRIEVTGESTTEAARRL-----AAAAPDHSVAALNFASARNPGGGYLNGAQAQEEALCRASALYATLLRAPE---YYDHHRADRDPLYTDRVIHSPGVPVFRDDRGGLLDRPYTVGFLTSPAPNAGVVRARTPERA-DRVPAALASRAERVLETAVAHGYRRIVLGAWGCGVFRNDPAEVAGAFRALLTGDGRFAGHFDEVVFGVLDRTREQHTLGAFRTAF 271          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A3P1T5V4_9ACTN (TIGR02452 family protein n=1 Tax=Arachnia propionica TaxID=1750 RepID=A0A3P1T5V4_9ACTN)

HSP 1 Score: 206 bits (523), Expect = 4.870e-62
Identity = 136/277 (49.10%), Postives = 166/277 (59.93%), Query Frame = 1
Query:   10 AEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDD--PTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDR-EEGATVRAFREAFT 831
            A ET+ ILE   Y +    +VDL E +  AV GT+ ++PD   P+     P       RI V+ E T +A  RL++              LNFASAK+PGGGFL GA AQEEALAR SAL+ C+   + R  Y  NR + D LY+D +I+SP VP  RDG G LL  P + A++TAPAPN GV     P GG D + A LR RA RVLA A  HGH  LVLGAWGCGVFRNDP EVA VFR  L+GPFA  F  VVFA+ DR  +   ++ F+E  T
Sbjct:   12 ARETVTILERGTYTSPNGVVVDLREEIARAVTGTVEYAPDADLPSPAATTP-----RVRIEVTPEGTFEAARRLRDENPV---------VLNFASAKHPGGGFLGGAQAQEEALARDSALYVCI---KDRGMYRINR-SRDTLYSDAMIHSPEVPVIRDGDGTLLDEPWLTAIITAPAPNAGVWLERNP-GGADLLEATLRERARRVLAVAHRHGHDSLVLGAWGCGVFRNDPTEVATVFRDLLAGPFAGAFGHVVFAVLDRTRDQRALKPFQEVLT 269          
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Match: A0A1I1ZYB1_9DELT (TIGR02452 family protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I1ZYB1_9DELT)

HSP 1 Score: 205 bits (522), Expect = 7.320e-62
Identity = 137/275 (49.82%), Postives = 168/275 (61.09%), Query Frame = 1
Query:    7 LAEETMKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHETTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRGANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPFFRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASRVLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVVFAIKDRE-EGATVRAFREAF 828
            LA+ET+ I+E  +Y     ++V ++E + +A  GT+ + P D   L  +P    +  +I V  ++T  A  +L        EG + VAALNFASA+NPGGGFL GA AQEE LAR SAL+ CL   ++R YY  NR     LYTDH+I+SPGVPFFRD    LL RP    +VTAPAPN G   R  P G  D V+ ALR RA RVL   A HG   LVLGAWGCGVFRNDP+EVA VF   L   +A  F  VVFAI DR  E AT++AF   F
Sbjct:    6 LAKETVAIVERGSYTGPSGQVVSIAEAVAAAQRGTVLYRPRDFDDLP-IPAGSGQGAKIEVWADTTGSAARKLVEQ-----EGVAEVAALNFASARNPGGGFLGGAKAQEEDLARCSALYHCLL--EAREYYDVNRADESVLYTDHVIWSPGVPFFRDERLDLLDRPFHVGIVTAPAPNAGEHLRRQPHGRAD-VSTALRRRAERVLRVLARHGQHTLVLGAWGCGVFRNDPKEVAQVFADLLRTTYARSFARVVFAIYDRSRERATLQAFERVF 271          
The following BLAST results are available for this feature:
BLAST of mRNA_H-akashiwo_Contig98.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3UW32_HETAK1.090e-189100.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3M2LU51_9ACTN2.730e-6449.64TIGR02452 family protein n=1 Tax=Actinomadura hare... [more]
A0A7U3VLA6_9ACTN4.640e-6349.64DUF2263 domain-containing protein n=1 Tax=Streptom... [more]
E8UB92_DEIML5.480e-6350.00DUF2263 domain-containing protein n=1 Tax=Deinococ... [more]
L7UJ20_MYXSD6.080e-6351.09DUF2263 domain-containing protein n=2 Tax=Myxococc... [more]
UPI001F42C5896.660e-6349.82TIGR02452 family protein n=1 Tax=Myxococcus stipit... [more]
A0A1D8GA77_9ACTN2.130e-6249.82DUF2263 domain-containing protein n=5 Tax=Streptom... [more]
A0A1D3DM26_9ACTN3.890e-6251.08TIGR02452 family protein n=1 Tax=Streptomyces ther... [more]
A0A3P1T5V4_9ACTN4.870e-6249.10TIGR02452 family protein n=1 Tax=Arachnia propioni... [more]
A0A1I1ZYB1_9DELT7.320e-6249.82TIGR02452 family protein n=1 Tax=Nannocystis exede... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-akashiwo_Contig98contigH-akashiwo_Contig98:946753..947592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Heterosigma akashiwo CCMP452 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog709986.Deima_2701
PFAMsDUF2263
Model size840
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.14e-62
EggNOG OGsCOG4295@1|root,COG4295@2|Bacteria
DescriptionUncharacterized protein conserved in bacteria (DUF2263)
Cds size819
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388066.1890204-UTR-H-akashiwo_Contig98:946752..9467731681388066.1890204-UTR-H-akashiwo_Contig98:946752..946773Heterosigma akashiwo CCMP452UTRH-akashiwo_Contig98 946753..946773 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681388066.2011156-CDS-H-akashiwo_Contig98:946773..9475921681388066.2011156-CDS-H-akashiwo_Contig98:946773..947592Heterosigma akashiwo CCMP452CDSH-akashiwo_Contig98 946774..947592 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-akashiwo_Contig98.16.1prot_H-akashiwo_Contig98.16.1Heterosigma akashiwo CCMP452polypeptideH-akashiwo_Contig98 946774..947592 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-akashiwo_Contig98.16.1

>prot_H-akashiwo_Contig98.16.1 ID=prot_H-akashiwo_Contig98.16.1|Name=mRNA_H-akashiwo_Contig98.16.1|organism=Heterosigma akashiwo CCMP452|type=polypeptide|length=273bp
MKILEEKNYLNQEYEMVDLSEPLVSAVDGTMCHSPDDPTLLEFVPWRRHE
TTRISVSLESTVDAIVRLQNLTSASAEGSSCVAALNFASAKNPGGGFLRG
ANAQEEALARSSALHACLTAPQSRTYYAANRRTHDGLYTDHLIYSPGVPF
FRDGGGALLARPAVAAVVTAPAPNRGVAERHFPFGGEDAVAAALRVRASR
VLAAAAVHGHSRLVLGAWGCGVFRNDPREVAGVFRAALSGPFAAVFEEVV
FAIKDREEGATVRAFREAFTDEE
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mRNA from alignment at H-akashiwo_Contig98:946753..947592+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-akashiwo_Contig98.16.1 ID=mRNA_H-akashiwo_Contig98.16.1|Name=mRNA_H-akashiwo_Contig98.16.1|organism=Heterosigma akashiwo CCMP452|type=mRNA|length=840bp|location=Sequence derived from alignment at H-akashiwo_Contig98:946753..947592+ (Heterosigma akashiwo CCMP452)
CAGACTCTTGCTGAAGAAACCATGAAAATTCTCGAGGAAAAAAACTACCT CAACCAGGAGTACGAAATGGTGGATCTAAGTGAGCCTCTTGTCTCTGCAG TGGATGGCACCATGTGCCACTCCCCTGACGACCCCACACTCTTGGAGTTT GTACCCTGGCGCCGCCACGAAACCACCCGCATCTCGGTCTCCTTGGAGAG CACAGTGGACGCCATCGTCCGCCTCCAAAACCTCACCAGCGCCAGCGCTG AGGGCAGCAGCTGCGTGGCGGCCCTCAACTTCGCCAGCGCCAAGAACCCC GGGGGCGGATTCCTCCGTGGTGCCAATGCCCAGGAAGAGGCGCTCGCACG ATCTTCGGCCCTCCACGCATGCCTGACCGCCCCGCAGAGCCGAACATACT ACGCGGCCAACCGCCGCACGCACGACGGCTTGTACACGGACCACCTGATC TACAGCCCAGGGGTGCCATTCTTCCGAGACGGGGGCGGAGCGCTGCTCGC CCGGCCAGCCGTGGCTGCCGTCGTCACTGCCCCGGCGCCCAACCGAGGCG TGGCCGAACGCCATTTCCCTTTTGGGGGGGAGGATGCAGTGGCGGCGGCG TTGCGGGTGCGGGCGTCCCGCGTGCTGGCGGCGGCGGCGGTACACGGACA CAGCAGGCTGGTGCTGGGGGCGTGGGGCTGTGGGGTGTTTCGCAACGACC CCCGGGAGGTGGCGGGGGTGTTTCGGGCAGCTCTCTCTGGGCCCTTTGCC GCAGTTTTTGAGGAGGTGGTTTTTGCTATCAAGGACCGGGAGGAGGGGGC CACAGTTCGTGCATTCCGGGAGGCCTTTACTGATGAGGAG
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Coding sequence (CDS) from alignment at H-akashiwo_Contig98:946753..947592+

>mRNA_H-akashiwo_Contig98.16.1 ID=mRNA_H-akashiwo_Contig98.16.1|Name=mRNA_H-akashiwo_Contig98.16.1|organism=Heterosigma akashiwo CCMP452|type=CDS|length=819bp|location=Sequence derived from alignment at H-akashiwo_Contig98:946753..947592+ (Heterosigma akashiwo CCMP452)
ATGAAAATTCTCGAGGAAAAAAACTACCTCAACCAGGAGTACGAAATGGT
GGATCTAAGTGAGCCTCTTGTCTCTGCAGTGGATGGCACCATGTGCCACT
CCCCTGACGACCCCACACTCTTGGAGTTTGTACCCTGGCGCCGCCACGAA
ACCACCCGCATCTCGGTCTCCTTGGAGAGCACAGTGGACGCCATCGTCCG
CCTCCAAAACCTCACCAGCGCCAGCGCTGAGGGCAGCAGCTGCGTGGCGG
CCCTCAACTTCGCCAGCGCCAAGAACCCCGGGGGCGGATTCCTCCGTGGT
GCCAATGCCCAGGAAGAGGCGCTCGCACGATCTTCGGCCCTCCACGCATG
CCTGACCGCCCCGCAGAGCCGAACATACTACGCGGCCAACCGCCGCACGC
ACGACGGCTTGTACACGGACCACCTGATCTACAGCCCAGGGGTGCCATTC
TTCCGAGACGGGGGCGGAGCGCTGCTCGCCCGGCCAGCCGTGGCTGCCGT
CGTCACTGCCCCGGCGCCCAACCGAGGCGTGGCCGAACGCCATTTCCCTT
TTGGGGGGGAGGATGCAGTGGCGGCGGCGTTGCGGGTGCGGGCGTCCCGC
GTGCTGGCGGCGGCGGCGGTACACGGACACAGCAGGCTGGTGCTGGGGGC
GTGGGGCTGTGGGGTGTTTCGCAACGACCCCCGGGAGGTGGCGGGGGTGT
TTCGGGCAGCTCTCTCTGGGCCCTTTGCCGCAGTTTTTGAGGAGGTGGTT
TTTGCTATCAAGGACCGGGAGGAGGGGGCCACAGTTCGTGCATTCCGGGA
GGCCTTTACTGATGAGGAG
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